Revision f24076bbf4a4a4af8e90100f344e10fb237e9b3b authored by Zhang Yunjun on 08 November 2022, 07:17:03 UTC, committed by GitHub on 08 November 2022, 07:17:03 UTC
+ .circleci/config.yml update: - use $BASH_ENV to set and share environment variable (PATH) among multiple run steps - rename to workflow/job to "unit-n-workflow-tests" + cli/save_gmt.py: fix a typo in the module import + cli/load_data: check `-t smallbaselineApp.cfg` existence and print out error msg + tsview: show the reference index/date info on the slider as the title
1 parent 64ffdef
multi_transect.py
#!/usr/bin/env python3
############################################################
# Program is part of MintPy #
# Copyright (c) 2013, Zhang Yunjun, Heresh Fattahi #
# Author: Heresh Fattahi, 2013 #
############################################################
import getopt
import os
import sys
import h5py
import matplotlib.pyplot as plt
import numpy as np
def usage():
print("""
*****************************************************************************************
Generating multiple profiles(each profile includes seeveral transects [specified by -n])
perpendicular to a Fault . Fault is a path specified by lat and lon coordinates.
Usage:
-n number of transects used to generate one profile
-d distance [in pixel] between individual transects to generate one profile
-F a txt file including the fault coordinates (first column lon , second column: lat)
-p flip profile left-right (yes or no) [default: no]
-u flip up - down [default: no]
-g gps_file (if exists)
-S source of GPS velocities (usgs,cmm4,mintpy)
-G gps stations to compare with InSAR (all,insar,profile)
"all": all gps stations is projected to the profile
"insar": same as all but limited to the area covered by insar
"profile": only those gps stations which are in the profile area]
-x lower bound to display in x direction
-X higher bound to display in x direction
-l lower bound to display in y direction
-h higher bound to display in y direction
-I display InSAR velocity [on] or off
-A display Average InSAR velocity [on] or off
-U display Standard deviation of the InSAR velocity [on] or off
-E Export the generated transect to a matlab file [off] or on
-W Length of a profile
-D Distance between two consequent average profile
Example:
multi_transect.py -f geo_velocity_masked.h5 -n 50 -d 1 -W 10 -D 2 -F Chaman_fault.txt
********************************************************************************************
""")
return
def dms2d(Coord):
d, m, s = Coord.split(' ')
d = float(d)
m = float(m)
s = float(s)
d = d+m/60.+s/3600.
return d
def gps_to_LOS(Ve, Vn, theta, heading):
unitVec = [np.cos(heading)*np.sin(theta), -np.sin(theta)
* np.sin(heading), np.cos(theta)]
gpsLOS = unitVec[0]*Ve+unitVec[1]*Vn
return gpsLOS
def check_st_in_box(x, y, x0, y0, x1, y1, X0, Y0, X1, Y1):
m1 = float(y1-y0)/float(x1-x0)
c1 = float(y0-m1*x0)
m2 = float(Y1-Y0)/float(X1-X0)
c2 = float(Y0-m2*X0)
m3 = float(y0-Y0)/float(x0-X0)
c3 = float(Y0-m3*X0)
m4 = float(y1-Y1)/float(x1-X1)
c4 = float(Y1-m4*X1)
yy1 = m1*x+c1
yy2 = m2*x+c2
yy = [yy1, yy2]
yy.sort()
xx3 = (y-c3)/m3
xx4 = (y-c4)/m4
xx = [xx3, xx4]
xx.sort()
if y >= yy[0] and y <= yy[1] and x >= xx[0] and x <= xx[1]:
Check_result = 'True'
else:
Check_result = 'False'
return Check_result
def check_st_in_box2(x, y, x0, y0, x1, y1, X0, Y0, X1, Y1):
m1, c1 = line(x0, y0, x1, y1)
m2, c2 = line(X0, Y0, X1, Y1)
m3, c3 = line(x0, y0, X0, Y0)
m4, c4 = line(x1, y1, X1, Y1)
D1 = np.sqrt((x1-x0)**2+(y1-y0)**2)
D2 = np.sqrt((X0-x0)**2+(Y0-y0)**2)
d1 = dist_point_from_line(m1, c1, x, y, 1, 1)
d2 = dist_point_from_line(m2, c2, x, y, 1, 1)
d3 = dist_point_from_line(m3, c3, x, y, 1, 1)
d4 = dist_point_from_line(m4, c4, x, y, 1, 1)
if np.round(d1+d2) == np.round(D2) and np.round(d3+d4) == np.round(D1):
Check_result = 'True'
else:
Check_result = 'False'
return Check_result
def line(x0, y0, x1, y1):
m = float(y1-y0)/float(x1-x0)
c = float(y0-m*x0)
return m, c
def dist_point_from_line(m, c, x, y, dx, dy):
# finds the distance of a point at x ,y xoordinate
# from a line with Y = mX +c
d = np.sqrt((((x+m*y-m*c)/(m**2+1)-x)*dx)**2 +
((m*(x+m*y-m*c)/(m**2+1)+c-y)*dy)**2)
#a=m;b=-1;
#d=np.abs(a*x+b*y+c)/np.sqrt(a**2+b**2)
return d
def get_intersect(m, c, x, y):
xp = (x+m*y-m*c)/(m**2+1)
yp = m*(x+m*y-m*c)/(m**2+1)+c
return xp, yp
def readGPSfile(gpsFile, gps_source):
if gps_source in ['cmm4', 'CMM4']:
gpsData = np.loadtxt(gpsFile, usecols=(1, 2, 3, 4, 5, 6, 7, 8, 9, 10))
Stations = np.loadtxt(gpsFile, dtype=str, usecols=(0, 1))[:, 0]
St = []
Lon = []
Lat = []
Ve = []
Vn = []
Se = []
Sn = []
for i in range(gpsData.shape[0]):
if 'GPS' in Stations[i]:
Lat.append(gpsData[i, 0])
Lon.append(gpsData[i, 1])
Ve.append(gpsData[i, 2])
Se.append(gpsData[i, 3])
Vn.append(gpsData[i, 4])
Sn.append(gpsData[i, 5])
St.append(Stations[i])
elif gps_source == 'mintpy':
gpsData = np.loadtxt(gpsFile, usecols=(1, 2, 3, 4, 5, 6)) # ,7,8,9))
Stations = np.loadtxt(gpsFile, dtype=str, usecols=(0, 1))[:, 0]
St = []
Lon = []
Lat = []
Ve = []
Vn = []
Se = []
Sn = []
for i in range(gpsData.shape[0]):
Lon.append(gpsData[i, 0])
Lat.append(gpsData[i, 1])
Ve.append(gpsData[i, 2])
Vn.append(gpsData[i, 3])
Se.append(gpsData[i, 4])
Sn.append(gpsData[i, 5])
St.append(Stations[i])
elif gps_source in ['usgs', 'USGS']:
gpsData_Hz = np.loadtxt(gpsFile, usecols=(0, 1, 2, 3, 4, 5, 6))
gpsData_up = np.loadtxt(gpsFile, usecols=(8, 9))
gpsData = np.hstack((gpsData_Hz, gpsData_up))
Stations = np.loadtxt(gpsFile, dtype=str, usecols=(7, 8))[:, 0]
St = []
Lon = []
Lat = []
Ve = []
Vn = []
Se = []
Sn = []
for i in range(gpsData.shape[0]):
Lat.append(gpsData[i, 0])
Lon.append(gpsData[i, 1])
Vn.append(gpsData[i, 2])
Ve.append(gpsData[i, 3])
Sn.append(gpsData[i, 4])
Se.append(gpsData[i, 5])
St.append(Stations[i])
return list(St), Lat, Lon, Ve, Se, Vn, Sn
def redGPSfile(gpsFile):
gpsData_Hz = np.loadtxt(gpsFile, usecols=(0, 1, 2, 3, 4, 5, 6))
gpsData_up = np.loadtxt(gpsFile, usecols=(8, 9))
gpsData = np.hstack((gpsData_Hz, gpsData_up))
Stations = np.loadtxt(gpsFile, dtype=str, usecols=(7, 8))[:, 0]
return list(Stations), gpsData
def redGPSfile_cmm4(gpsFile):
#gpsData = np.loadtxt(gpsFile,usecols = (1,2,3,4,5,6,7,8,9,10))
gpsData = np.loadtxt(gpsFile, usecols=(1, 2, 3, 4, 5, 6, 7, 8, 9))
#gpsData_up = np.loadtxt(gpsFile,usecols = (8,9))
#gpsData=np.hstack((gpsData_Hz,gpsData_up))
Stations = np.loadtxt(gpsFile, dtype=str, usecols=(0, 1))[:, 0]
return list(Stations), gpsData
def nearest(x, tbase, xstep):
""" find nearest neighbour """
dist = np.sqrt((tbase - x)**2)
if min(dist) <= np.abs(xstep):
indx = dist == min(dist)
else:
indx = []
return indx
def find_row_column(Lon, Lat, lon, lat, lon_step, lat_step):
################################################
# finding row and column numbers of the GPS point
idx = nearest(Lon, lon, lon_step)
idy = nearest(Lat, lat, lat_step)
if idx != [] and idy != []:
IDX = np.where(idx == True)[0][0]
IDY = np.where(idy == True)[0][0]
else:
IDX = np.nan
IDY = np.nan
return IDY, IDX
################################################
def get_lat_lon(h5file):
k = list(h5file.keys())
Length = float(h5file[k[0]].attrs['LENGTH'])
Width = float(h5file[k[0]].attrs['WIDTH'])
ullon = float(h5file[k[0]].attrs['X_FIRST'])
ullat = float(h5file[k[0]].attrs['Y_FIRST'])
lon_step = float(h5file[k[0]].attrs['X_STEP'])
lat_step = float(h5file[k[0]].attrs['Y_STEP'])
#Length,Width = np.shape(insarData)
lllat = ullat+(Length-1)*lat_step
urlon = ullon+(Width-1)*lon_step
lat = np.linspace(ullat, lllat, Length)
lon = np.linspace(ullon, urlon, Width)
lon_all = np.tile(lon, (Length, 1))
lat_all = np.tile(lat, (Width, 1)).T
#lat=np.arange(ullat,lllat,lat_step)
#lon=np.arange(ullon,urlon,lon_step)
return lat, lon, lat_step, lon_step, lat_all, lon_all
def nanmean(data, **args):
return np.ma.filled(np.ma.masked_array(data, np.isnan(data)).mean(**args), fill_value=np.nan)
def nanstd(data, **args):
return np.ma.filled(np.ma.masked_array(data, np.isnan(data)).std(**args), fill_value=np.nan)
def get_transect(z, x0, y0, x1, y1):
length = int(np.hypot(x1-x0, y1-y0))
x, y = np.linspace(x0, x1, length), np.linspace(y0, y1, length)
zi = z[y.astype(np.int), x.astype(np.int)]
return zi
def get_start_end_point(Xf0, Yf0, Xf1, Yf1, L, dx, dy):
L = L*1000/dx
m, c = line(Xf0, Yf0, Xf1, Yf1)
mp = -1./m
a = np.arctan(1./mp)
xs = L*np.sin(a)+Xf0
ys = L*np.cos(a)+Yf0
xe = -L*np.sin(a)+Xf0
ye = -L*np.cos(a)+Yf0
return int(ys), int(xs), int(ye), int(xe)
def point_with_distance_from_line(Xf0, Yf0, Xf1, Yf1, L):
m, c = line(Xf0, Yf0, Xf1, Yf1)
mp = -1./m
a = np.arctan(1./mp)
x = L*np.sin(a)+Xf0
y = L*np.cos(a)+Yf0
return x, y
def point_on_line_with_distance_from_beginning(Xf0, Yf0, Xf1, Yf1, L):
m, c = line(Xf0, Yf0, Xf1, Yf1)
a = np.arctan(1./m)
x = L*np.sin(a)+Xf0
y = L*np.cos(a)+Yf0
return x, y
def read_fault_coords(Fault_coord_file, Dp):
Coords = np.loadtxt(Fault_coord_file)
Dp = Dp*180.0/np.pi/6375.0
Np = Coords.shape[0]
Fault_lon = []
Fault_lat = []
Fault_lon.append(Coords[0, 0])
Fault_lat.append(Coords[0, 1])
for i in range(Np-1):
# Fault_lon.append(Coords[i,0])
# Fault_lat.append(Coords[i,1])
Xf0 = Coords[i, 0]
Yf0 = Coords[i, 1]
Xf1 = Coords[i+1, 0]
Yf1 = Coords[i+1, 1]
DY = Yf1-Yf0
DX = Xf1-Xf0
Fault_Segment = np.hypot(DX, DY)
if Fault_Segment <= Dp:
Fault_lon.append(Coords[i+1, 0])
Fault_lat.append(Coords[i+1, 1])
else:
L = Dp
ii = 0
while Fault_Segment > L:
ii = ii+1
x, y = point_on_line_with_distance_from_beginning(
Xf0, Yf0, Xf1, Yf1, Dp*ii)
Dx = y-Yf0
Dy = x-Xf0
L = np.hypot(Dx, Dy)
if L <= Fault_Segment:
Fault_lon.append(x)
Fault_lat.append(y)
print(ii)
return Fault_lon, Fault_lat
#####################################################################
def main(argv=None):
ntrans = 1
save_to_mat = 'off'
flip_profile = 'no'
which_gps = 'all'
flip_updown = 'yes'
incidence_file = 'incidence_file'
display_InSAR = 'on'
display_Average = 'on'
display_Standard_deviation = 'on'
try:
opts, args = getopt.getopt(
argv, "f:s:e:n:d:g:l:h:r:L:F:p:u:G:S:i:I:A:U:E:D:W:x:X:")
except getopt.GetoptError:
usage()
sys.exit(1)
for opt, arg in opts:
if opt == '-f':
velocityFile = arg
elif opt == '-s':
pnt1 = arg.split(',')
y0 = int(pnt1[0])
x0 = int(pnt1[1])
elif opt == '-e':
pnt2 = arg.split(',')
y1 = int(pnt2[0])
x1 = int(pnt2[1])
elif opt == '-n':
ntrans = int(arg)
elif opt == '-d':
dp = float(arg)
elif opt == '-g':
gpsFile = arg
elif opt == '-r':
refStation = arg
elif opt == '-i':
incidence_file = arg
elif opt == '-L':
stationsList = arg.split(',')
elif opt == '-F':
Fault_coord_file = arg
elif opt == '-p':
flip_profile = arg
elif opt == '-u':
flip_updown = arg
print(flip_updown)
elif opt == '-G':
which_gps = arg
elif opt == '-S':
gps_source = arg
elif opt == '-l':
lbound = float(arg)
elif opt == '-I':
display_InSAR = arg
elif opt == '-A':
display_Average = arg
elif opt == '-U':
display_Standard_deviation = arg
elif opt == '-E':
save_to_mat = arg
elif opt == '-h':
hbound = float(arg)
elif opt == '-D':
Dp = float(arg)
elif opt == '-W':
profile_Length = float(arg)
elif opt == '-x':
x_lbound = float(arg)
elif opt == '-X':
x_hbound = float(arg)
try:
h5file = h5py.File(velocityFile, 'r')
except:
usage()
sys.exit(1)
k = list(h5file.keys())
dset = h5file[k[0]].get(k[0])
z = dset[0:dset.shape[0], 0:dset.shape[1]]
dx = float(h5file[k[0]].attrs['X_STEP'])*6375000.0*np.pi/180.0
dy = float(h5file[k[0]].attrs['Y_STEP'])*6375000.0*np.pi/180.0
#############################################################################
try:
lat, lon, lat_step, lon_step, lat_all, lon_all = get_lat_lon(h5file)
except:
print('radar coordinate')
Fault_lon, Fault_lat = read_fault_coords(Fault_coord_file, Dp)
# Fault_lon=[66.40968453947265,66.36000186563085,66.31103920134248]
# Fault_lat=[30.59405079532564,30.51565960186412,30.43928430936202]
Num_profiles = len(Fault_lon)-1
print('*********************************************')
print('*********************************************')
print('Number of profiles to be generated: '+str(Num_profiles))
print('*********************************************')
print('*********************************************')
for Np in range(Num_profiles):
FaultCoords = [Fault_lat[Np], Fault_lon[Np],
Fault_lat[Np+1], Fault_lon[Np+1]]
print('%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%')
print('%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%')
print('')
print('Profile '+str(Np) + ' [of total '+str(Num_profiles)+']')
print('')
try:
# Lat0 = dms2d(FaultCoords[0]); Lon0 = dms2d(FaultCoords[1])
# Lat1 = dms2d(FaultCoords[2]); Lon1 = dms2d(FaultCoords[3])
Lat0 = FaultCoords[0]
Lon0 = FaultCoords[1]
Lat1 = FaultCoords[2]
Lon1 = FaultCoords[3]
Length, Width = np.shape(z)
Yf0, Xf0 = find_row_column(
Lon0, Lat0, lon, lat, lon_step, lat_step)
Yf1, Xf1 = find_row_column(
Lon1, Lat1, lon, lat, lon_step, lat_step)
print('*********************************************')
print(' Fault Coordinates:')
print(' -------------------------- ')
print(' Lat Lon')
print(str(Lat0) + ' , ' + str(Lon0))
print(str(Lat1) + ' , ' + str(Lon1))
print(' -------------------------- ')
print(' row column')
print(str(Yf0) + ' , ' + str(Xf0))
print(str(Yf1) + ' , ' + str(Xf1))
print('*********************************************')
#mf=float(Yf1-Yf0)/float((Xf1-Xf0)) # slope of the fault line
#cf=float(Yf0-mf*Xf0) # intercept of the fault line
#df0=dist_point_from_line(mf,cf,x0,y0,1,1) #distance of the profile start point from the Fault line
#df1=dist_point_from_line(mf,cf,x1,y1,1,1) #distance of the profile end point from the Fault line
#mp=-1./mf # slope of profile which is perpendicualr to the fault line
# correcting the end point of the profile to be on a line perpendicular to the Fault
#x1=int((df0+df1)/np.sqrt(1+mp**2)+x0)
#y1=int(mp*(x1-x0)+y0)
except:
print('*********************************************')
print('No information about the Fault coordinates!')
print('*********************************************')
#############################################################################
y0, x0, y1, x1 = get_start_end_point(
Xf0, Yf0, Xf1, Yf1, profile_Length, dx, dy)
try:
x0
y0
x1
y1
except:
fig = plt.figure()
ax = fig.add_subplot(111)
ax.imshow(z)
try:
ax.plot([Xf0, Xf1], [Yf0, Yf1], 'k-')
except:
print('Fault line is not specified')
xc = []
yc = []
print('please click on start and end point of the desired profile')
def onclick(event):
if event.button == 1:
print('click')
xc.append(int(event.xdata))
yc.append(int(event.ydata))
cid = fig.canvas.mpl_connect('button_press_event', onclick)
plt.show()
x0 = xc[0]
x1 = xc[1]
y0 = yc[0]
y1 = yc[1]
##############################################################################
print('******************************************************')
print('First profile coordinates:')
print('Start point: y = '+str(y0) + ',x = ' + str(x0))
print('End point: y = ' + str(y1) + ' , x = '+str(x1))
print('')
print(str(y0) + ',' + str(x0))
print(str(y1) + ',' + str(x1))
print('******************************************************')
length = int(np.hypot(x1-x0, y1-y0))
x, y = np.linspace(x0, x1, length), np.linspace(y0, y1, length)
zi = z[y.astype(np.int), x.astype(np.int)]
try:
lat_transect = lat_all[y.astype(np.int), x.astype(np.int)]
lon_transect = lon_all[y.astype(np.int), x.astype(np.int)]
except:
lat_transect = 'Nan'
lon_transect = 'Nan'
# zi=get_transect(z,x0,y0,x1,y1)
try:
dx = float(h5file[k[0]].attrs['X_STEP'])*6375000.0*np.pi/180.0
dy = float(h5file[k[0]].attrs['Y_STEP'])*6375000.0*np.pi/180.0
DX = (x-x0)*dx
DY = (y-y0)*dy
D = np.hypot(DX, DY)
print('geo coordinate:')
print('profile length = ' + str(D[-1]/1000.0) + ' km')
#df0_km=dist_point_from_line(mf,cf,x0,y0,dx,dy)
except:
dx = float(h5file[k[0]].attrs['RANGE_PIXEL_SIZE'])
dy = float(h5file[k[0]].attrs['AZIMUTH_PIXEL_SIZE'])
DX = (x-x0)*dx
DY = (y-y0)*dy
D = np.hypot(DX, DY)
print('radar coordinate:')
print('profile length = ' + str(D[-1]/1000.0) + ' km')
#df0_km=dist_point_from_line(mf,cf,x0,y0,dx,dy)
try:
mf, cf = line(Xf0, Yf0, Xf1, Yf1)
df0_km = dist_point_from_line(mf, cf, x0, y0, dx, dy)
except:
print('Fault line is not specified')
transect = np.zeros([len(D), ntrans])
transect[:, 0] = zi
XX0 = []
XX1 = []
YY0 = []
YY1 = []
XX0.append(x0)
XX1.append(x1)
YY0.append(y0)
YY1.append(y1)
if ntrans > 1:
m = float(y1-y0)/float(x1-x0)
c = float(y0-m*x0)
m1 = -1.0/m
try:
dp
except:
dp = 1.0
if lat_transect == 'Nan':
for i in range(1, ntrans):
X0 = i*dp/np.sqrt(1+m1**2)+x0
Y0 = m1*(X0-x0)+y0
X1 = i*dp/np.sqrt(1+m1**2)+x1
Y1 = m1*(X1-x1)+y1
zi = get_transect(z, X0, Y0, X1, Y1)
transect[:, i] = zi
XX0.append(X0)
XX1.append(X1)
YY0.append(Y0)
YY1.append(Y1)
else:
transect_lat = np.zeros([len(D), ntrans])
transect_lat[:, 0] = lat_transect
transect_lon = np.zeros([len(D), ntrans])
transect_lon[:, 0] = lon_transect
for i in range(1, ntrans):
X0 = i*dp/np.sqrt(1+m1**2)+x0
Y0 = m1*(X0-x0)+y0
X1 = i*dp/np.sqrt(1+m1**2)+x1
Y1 = m1*(X1-x1)+y1
zi = get_transect(z, X0, Y0, X1, Y1)
lat_transect = get_transect(lat_all, X0, Y0, X1, Y1)
lon_transect = get_transect(lon_all, X0, Y0, X1, Y1)
transect[:, i] = zi
transect_lat[:, i] = lat_transect
transect_lon[:, i] = lon_transect
XX0.append(X0)
XX1.append(X1)
YY0.append(Y0)
YY1.append(Y1)
#############################################
try:
m_prof_edge, c_prof_edge = line(XX0[0], YY0[0], XX0[-1], YY0[-1])
except:
print('Plotting one profile')
###############################################################################
if flip_profile == 'yes':
transect = np.flipud(transect)
try:
df0_km = np.max(D)-df0_km
except:
print('')
print('******************************************************')
try:
gpsFile
except:
gpsFile = 'Nogps'
print('GPS velocity file:')
print(gpsFile)
print('*******************************************************')
if os.path.isfile(gpsFile):
insarData = z
del z
Stations, Lat, Lon, Ve, Se, Vn, Sn = readGPSfile(gpsFile, gps_source)
idxRef = Stations.index(refStation)
Length, Width = np.shape(insarData)
lat, lon, lat_step, lon_step = get_lat_lon(h5file)
IDYref, IDXref = find_row_column(
Lon[idxRef], Lat[idxRef], lon, lat, lon_step, lat_step)
if (not np.isnan(IDYref)) and (not np.isnan(IDXref)):
print('referencing InSAR data to the GPS station at : ' +
str(IDYref) + ' , ' + str(IDXref))
if not np.isnan(insarData[IDYref][IDXref]):
transect = transect - insarData[IDYref][IDXref]
insarData = insarData - insarData[IDYref][IDXref]
else:
print("""
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
WARNING: nan value for InSAR data at the reference pixel!
reference station should be a pixel with valid value in InSAR data.
please select another GPS station as the reference station.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
""")
sys.exit(1)
else:
print('WARNING:')
print('Reference GPS station is out of the area covered by InSAR data')
print('please select another GPS station as the reference station.')
sys.exit(1)
try:
stationsList
except:
stationsList = Stations
# theta=23.0*np.pi/180.0
if os.path.isfile(incidence_file):
print('Using exact look angle for each pixel')
h5file_theta = h5py.File(incidence_file, 'r')
dset = h5file_theta['mask'].get('mask')
theta = dset[0:dset.shape[0], 0:dset.shape[1]]
theta = theta*np.pi/180.0
else:
print('Using average look angle')
theta = np.ones(np.shape(insarData))*23.0*np.pi/180.0
heading = 193.0*np.pi/180.0
#unitVec=[-np.sin(theta)*np.sin(heading),-np.cos(heading)*np.sin(theta),-np.cos(theta)]
# -np.cos(theta)]
unitVec = [np.cos(heading)*np.sin(theta), -
np.sin(theta)*np.sin(heading), 0]
# [0.0806152480932643, 0.34918300221540616, -0.93358042649720174]
# print unitVec
# unitVec=[0.3,-0.09,0.9]
# unitVec=[-0.3,0.09,-0.9]
# unitVec=[-0.3,0.09,0]
# print '*******************************************'
# print 'unit vector to project GPS to InSAR LOS:'
# print unitVec
# print '*******************************************'
# gpsLOS_ref=unitVec[0]*Ve[idxRef]+unitVec[1]*Vn[idxRef]#+unitVec[2]*Vu[idxRef]
gpsLOS_ref = gps_to_LOS(
Ve[idxRef], Vn[idxRef], theta[IDYref, IDXref], heading)
print('%%%%%%^^^^^^^%%%%%%%%')
print(gpsLOS_ref/1000.0)
# insarData=insarData -gpsLOS_ref/1000.0
# transect = transect -gpsLOS_ref/1000.0
GPS = []
GPS_station = []
GPSx = []
GPSy = []
GPS_lat = []
GPS_lon = []
for st in stationsList:
try:
idx = Stations.index(st)
#gpsLOS = unitVec[0]*Ve[idx]+unitVec[1]*Vn[idx]#+unitVec[2]*Vu[idx]
#gpsLOS = gps_to_LOS(Ve[idx],Vn[idx],theta[idx],heading)
#gpsLOS=gpsLOS-gpsLOS_ref
IDY, IDX = find_row_column(
Lon[idx], Lat[idx], lon, lat, lon_step, lat_step)
print(theta[IDY, IDX])
gpsLOS = gps_to_LOS(
Ve[idx], Vn[idx], theta[IDY, IDX], heading)
#gpsLOS = gpsLOS-gpsLOS_ref
if which_gps == 'all':
if theta[IDY, IDX] != 0.0:
GPS.append(gpsLOS-gpsLOS_ref)
GPS_station.append(st)
GPSx.append(IDX)
GPSy.append(IDY)
GPS_lat.append(Lat[idx])
GPS_lon.append(Lon[idx])
elif not np.isnan(insarData[IDY][IDX]):
if theta[IDY, IDX] != 0.0:
GPS.append(gpsLOS-gpsLOS_ref)
GPS_station.append(st)
GPSx.append(IDX)
GPSy.append(IDY)
GPS_lat.append(Lat[idx])
GPS_lon.append(Lon[idx])
except:
NoInSAR = 'yes'
DistGPS = []
GPS_in_bound = []
GPS_in_bound_st = []
GPSxx = []
GPSyy = []
for i in range(len(GPS_station)):
gx = GPSx[i]
gy = GPSy[i]
if which_gps in ['all', 'insar']:
check_result = 'True'
else:
check_result = check_st_in_box(
gx, gy, x0, y0, x1, y1, X0, Y0, X1, Y1)
if check_result == 'True':
check_st_in_box2(gx, gy, x0, y0, x1, y1, X0, Y0, X1, Y1)
GPS_in_bound_st.append(GPS_station[i])
GPS_in_bound.append(GPS[i])
GPSxx.append(GPSx[i])
GPSyy.append(GPSy[i])
# gy=y0+1
# gx=x0+1
# gxp,gyp=get_intersect(m,c,gx,gy)
# Dx=dx*(gx-gxp);Dy=dy*(gy-gyp)
# print gxp
# print gyp
# distance of GPS station from the first profile line
dg = dist_point_from_line(m, c, gx, gy, 1, 1)
# DistGPS.append(np.hypot(Dx,Dy))
# X0=dg/np.sqrt(1+m1**2)+x0
# Y0=m1*(X0-x0)+y0
# DistGPS.append(np.hypot(dx*(gx-X0), dy*(gy-Y0)))
DistGPS.append(dist_point_from_line(
m_prof_edge, c_prof_edge, GPSx[i], GPSy[i], dx, dy))
print('****************************************************')
print('GPS stations in the profile area:')
print(GPS_in_bound_st)
print('****************************************************')
GPS_in_bound = np.array(GPS_in_bound)
DistGPS = np.array(DistGPS)
#axes[1].plot(DistGPS/1000.0, -1*GPS_in_bound/1000, 'bo')
if gpsFile == 'Nogps':
insarData = z
GPSxx = []
GPSyy = []
GPSx = []
GPSy = []
GPS = []
XX0[0] = x0
XX1[0] = x1
YY0[0] = y0
YY1[0] = y1
print('****************')
print('flip up-down')
print(flip_updown)
if flip_updown == 'yes' and gpsFile != 'Nogps':
print('Flipping up-down')
transect = -1*transect
GPS_in_bound = -1*GPS_in_bound
elif flip_updown == 'yes':
print('Flipping up-down')
transect = -1*transect
if flip_profile == 'yes' and gpsFile != 'Nogps':
GPS = np.flipud(GPS)
GPS_in_bound = np.flipud(GPS_in_bound)
DistGPS = np.flipud(max(D)-DistGPS)
fig, axes = plt.subplots(nrows=2)
axes[0].imshow(insarData)
for i in range(ntrans):
axes[0].plot([XX0[i], XX1[i]], [YY0[i], YY1[i]], 'r-')
axes[0].plot(GPSx, GPSy, 'b^')
axes[0].plot(GPSxx, GPSyy, 'k^')
if gpsFile != 'Nogps':
axes[0].plot(IDXref, IDYref, 'r^')
axes[0].axis('image')
axes[1].plot(D/1000.0, transect, 'ko', ms=1)
avgInSAR = np.array(nanmean(transect, axis=1))
stdInSAR = np.array(nanstd(transect, axis=1))
# std=np.std(transect,1)
# axes[1].plot(D/1000.0, avgInSAR, 'r-')
try:
axes[1].plot(DistGPS/1000.0, -1*GPS_in_bound/1000, 'b^', ms=10)
except:
print('')
# pl.fill_between(x, y-error, y+error,alpha=0.6, facecolor='0.20')
# print transect
#############################################################################
fig2, axes2 = plt.subplots(nrows=1)
axes2.imshow(insarData)
# for i in range(ntrans):
axes2.plot([XX0[0], XX1[0]], [YY0[0], YY1[0]], 'k-')
axes2.plot([XX0[-1], XX1[-1]], [YY0[-1], YY1[-1]], 'k-')
axes2.plot([XX0[0], XX0[-1]], [YY0[0], YY0[-1]], 'k-')
axes2.plot([XX1[0], XX1[-1]], [YY1[0], YY1[-1]], 'k-')
try:
axes2.plot([Xf0, Xf1], [Yf0, Yf1], 'k-')
except:
FaultLine = 'None'
axes2.plot(GPSx, GPSy, 'b^')
axes2.plot(GPSxx, GPSyy, 'k^')
if gpsFile != 'Nogps':
axes2.plot(IDXref, IDYref, 'r^')
axes2.axis('image')
figName = 'transect_area_'+str(Np)+'.png'
print('writing '+figName)
plt.savefig(figName)
#############################################################################
fig = plt.figure()
fig.set_size_inches(10, 4)
ax = plt.Axes(fig, [0., 0., 1., 1.], )
ax = fig.add_subplot(111)
if display_InSAR in ['on', 'On', 'ON']:
ax.plot(D/1000.0, transect*1000, 'o',
ms=1, mfc='Black', linewidth='0')
############################################################################
# save the profile data:
if save_to_mat in ['ON', 'on', 'On']:
import scipy.io as sio
matFile = 'transect'+str(Np)+'.mat'
dataset = {}
dataset['datavec'] = transect
try:
dataset['lat'] = transect_lat
dataset['lon'] = transect_lon
except:
dataset['lat'] = 'Nan'
dataset['lon'] = 'Nan'
dataset['Unit'] = 'm'
dataset['Distance_along_profile'] = D
print('*****************************************')
print('')
print('writing transect to >>> '+matFile)
sio.savemat(matFile, {'dataset': dataset})
print('')
print('*****************************************')
#############################################################################
if display_Standard_deviation in ['on', 'On', 'ON']:
for i in np.arange(0.0, 1.01, 0.01):
# ,color='#DCDCDC')#'LightGrey')
ax.plot(D/1000.0, (avgInSAR-i*stdInSAR) *
1000, '-', color='#DCDCDC', alpha=0.5)
for i in np.arange(0.0, 1.01, 0.01):
ax.plot(D/1000.0, (avgInSAR+i*stdInSAR)*1000, '-',
color='#DCDCDC', alpha=0.5) # 'LightGrey')
#############################################################################
if display_Average in ['on', 'On', 'ON']:
ax.plot(D/1000.0, avgInSAR*1000, 'r-')
###########
try:
ax.plot(DistGPS/1000.0, -1*GPS_in_bound, '^', ms=10, mfc='Cyan')
except:
print('')
ax.set_ylabel('LOS velocity [mm/yr]', fontsize=26)
ax.set_xlabel('Distance along profile [km]', fontsize=26)
###################################################################
# lower and higher bounds for diplaying the profile
try:
lbound
hbound
except:
lbound = np.nanmin(transect)*1000
hbound = np.nanmax(transect)*1000
###################################################################
# To plot the Fault location on the profile
ax.plot([df0_km/1000.0, df0_km/1000.0], [lbound, hbound],
'--', color='black', linewidth='2')
###################################################################
try:
ax.set_ylim(lbound, hbound)
except:
ylim = 'no'
try:
ax.set_xlim(x_lbound, x_hbound)
except:
xlim = 'no'
##########
# Temporary To plot DEM
# majorLocator = MultipleLocator(5)
# ax.yaxis.set_major_locator(majorLocator)
# minorLocator = MultipleLocator(1)
# ax.yaxis.set_minor_locator(minorLocator)
# plt.tick_params(which='major', length=15,width=2)
# plt.tick_params(which='minor', length=6,width=2)
# try:
# for tick in ax.xaxis.get_major_ticks():
# tick.label.set_fontsize(26)
# for tick in ax.yaxis.get_major_ticks():
# tick.label.set_fontsize(26)
#
# plt.tick_params(which='major', length=15,width=2)
# plt.tick_params(which='minor', length=6,width=2)
# except:
# print 'couldn not fix the ticks! '
figName = 'transect_'+str(Np)+'.png'
print('writing '+figName)
plt.savefig(figName)
print('')
print('________________________________')
# plt.show()
#############################################################################
if __name__ == '__main__':
main(sys.argv[1:])
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