Revision f24076bbf4a4a4af8e90100f344e10fb237e9b3b authored by Zhang Yunjun on 08 November 2022, 07:17:03 UTC, committed by GitHub on 08 November 2022, 07:17:03 UTC
+ .circleci/config.yml update:
   - use $BASH_ENV to set and share environment variable (PATH) among multiple run steps
   - rename to workflow/job to "unit-n-workflow-tests"

+ cli/save_gmt.py: fix a typo in the module import

+ cli/load_data: check `-t smallbaselineApp.cfg` existence and print out error msg

+ tsview: show the reference index/date info on the slider as the title
1 parent 64ffdef
Raw File
save_gmt.py
############################################################
# Program is part of MintPy                                #
# Copyright (c) 2013, Zhang Yunjun, Heresh Fattahi         #
# Author: Heresh Fattahi, 2013                             #
############################################################
# Modified from _gmt.py, GIANT v1.0, Caltech.


import numpy as np
from scipy.io import netcdf

from mintpy.utils import plot as pp, readfile


####################################################################################
def write_gmt_simple(lons, lats, z, fname, title='default', name='z', scale=1.0, offset=0, units='meters'):
    """Writes a simple GMT grd file with one array.

    This is based on the gdal2grd.py script found at:
        http://http://www.vso.cape.com/~nhv/files/python/gdal/gdal2grd.py

    Parameters: lons : 1D Array of lon values
                lats : 1D Array of lat values
                z : 2D slice to be saved
                fname : Output file name
    Kwargs:     title : Title for the grd file
                name : Name of the field in the grd file
                scale : Scale value in the grd file
                offset : Offset value in the grd file
    Returns:    fname
    """

    fid = netcdf.netcdf_file(fname, 'w')

    # Create a dimension variable
    fid.createDimension('side', 2)
    fid.createDimension('xysize', np.prod(z.shape))

    # Range variables
    fid.createVariable('x_range', 'd', ('side',))
    fid.variables['x_range'].units = 'degrees'

    fid.createVariable('y_range', 'd', ('side',))
    fid.variables['y_range'].units = 'degrees'

    fid.createVariable('z_range', 'd', ('side',))
    fid.variables['z_range'].units = units

    # Spacing
    fid.createVariable('spacing', 'd', ('side',))
    fid.createVariable('dimension', 'i4', ('side',))

    fid.createVariable('z', 'f', ('xysize',))
    fid.variables['z'].long_name = name
    fid.variables['z'].scale_factor = scale
    fid.variables['z'].add_offset = offset
    fid.variables['z'].node_offset = 0

    fid.title = title
    fid.source = 'MintPy'

    # Filling in the actual data
    fid.variables['x_range'][0] = lons[0]
    fid.variables['x_range'][1] = lons[-1]
    fid.variables['spacing'][0] = lons[1]-lons[0]

    fid.variables['y_range'][0] = lats[0]
    fid.variables['y_range'][1] = lats[-1]
    fid.variables['spacing'][1] = lats[1]-lats[0]

    # Range
    fid.variables['z_range'][0] = np.nanmin(z)
    fid.variables['z_range'][1] = np.nanmax(z)

    fid.variables['dimension'][:] = z.shape[::-1]
    fid.variables['z'][:] = np.flipud(z).flatten()
    fid.close()

    return fname
    ############################################################
    # Program is part of GIAnT v1.0                            #
    # Copyright 2012, by the California Institute of Technology#
    # Contact: earthdef@gps.caltech.edu                        #
    ############################################################


####################################################################################
def get_geo_lat_lon(atr):
    X_FIRST = float(atr['X_FIRST'])
    Y_FIRST = float(atr['Y_FIRST'])
    X_STEP = float(atr['X_STEP'])
    Y_STEP = float(atr['Y_STEP'])
    W = int(atr['WIDTH'])
    L = int(atr['LENGTH'])
    Y_END = Y_FIRST + L * Y_STEP
    X_END = X_FIRST + W * X_STEP

    X = np.linspace(X_FIRST, X_END, W)
    Y = np.linspace(Y_FIRST, Y_END, L)

    return Y, X


def write_grd_file(data, atr, out_file=None):
    """Write GMT .grd file for input data matrix, using giant._gmt module.
    Parameters: data     - 2D np.ndarray in int/float, data matrix to write
                atr      - dict, attributes of input data matrix
                out_file - str, output file name
    Returns:    out_file - str, output file name
    """
    # Get 1D array of lats and lons
    lats, lons = get_geo_lat_lon(atr)

    # writing
    print('writing >>> '+out_file)
    write_gmt_simple(
        lons=lons,
        lats=np.flipud(lats),
        z=np.flipud(data),
        fname=out_file,
        name=atr['FILE_TYPE'],
        units=atr['UNIT'],
    )

    return out_file


####################################################################################
def save_gmt(inps):
    # read data
    data, atr = readfile.read(inps.file, datasetName=inps.dset)

    # default output file name
    if not inps.outfile:
        outbase = pp.auto_figure_title(inps.file, inps.dset, vars(inps))
        inps.outfile = f'{outbase}.grd'

    # write GMT *.grd file
    write_grd_file(data, atr, inps.outfile)

    print('Done.')
    return
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