| f257c5f | Amos Egel | 16 July 2020, 10:17:17 UTC | update docstrings | 16 July 2020, 10:17:17 UTC |
| 6b51f16 | Krzysztof Czajkowski | 17 April 2020, 07:59:39 UTC | modified t-matrix calculation and nonaxsym implementation added new files for nfmds wrapper updated NFMDS added a simple STL converter modified setup to perform f2py step fixed several bugs in customparticle class extended stl conversion towards many surfaces added proper axially symmetric support reformatted code with PyCharm Delete nfpy3.cpython-36m-x86_64-linux-gnu.so first step towards integration of axisymmetric particles into smuthi improved axisymmetric particle class added win folder with windows encoded files setup.py improvements setup.py with good command for windows fixed paths install works on Win, but takes plenty of time simple example added axisymmetric particle support enabled nfpy3 module is linked as a package data changed installation step order added new implementations of finite cylinder and spheroid finite cylinder and spheroid minor bugfixes numpy distutils removed from setup.py extension works for arbitrary ambient medium nrank can be higher than lmax, for now, assuming that mmax is equal to lmax Update .gitlab-ci.yml Update setup.py Update .gitlab-ci.yml setup updated Update .gitlab-ci.yml Update test_wigner3j.py Obsolete cffi_support module replaced test_t_matrix.py adjusted to new API style first refactoring step taxsym corrected removed t_matrix_axsym references new test added minor bugfix in nfmds test minor bugfix in nfmds test minor bugfix in nfmds test, removed unnecessary prints ds bugfix ds bugfix ds bugfix quadrupole precsion added double precision brought back appendtot refactored refactored names, added docstrings in the particle module Upload encoding_converter for windows Update setup.py for windows Update setup.py Minor stlmanager bugfix corrected example url changes | 16 July 2020, 09:29:17 UTC |
| eb4a1e2 | Amos Egel | 13 July 2020, 10:27:09 UTC | Merge branch 'lorenzo-contrib' into 'master' save also internal field See merge request AmosEgel/smuthi!56 | 13 July 2020, 10:27:09 UTC |
| a649399 | Lorenzo Pattelli | 13 July 2020, 08:43:39 UTC | graphical_output: save also internal field if show_internal_field=True | 13 July 2020, 08:43:39 UTC |
| 70a1460 | Lorenzo Pattelli | 13 July 2020, 08:30:02 UTC | fix typo | 13 July 2020, 08:30:02 UTC |
| 2a0350c | Amos Egel | 23 June 2020, 15:12:37 UTC | Merge branch 'param_selection' into 'master' angular resolution selection See merge request AmosEgel/smuthi!54 | 23 June 2020, 15:12:37 UTC |
| 710cfba | Amos Egel | 23 June 2020, 15:11:20 UTC | Merge branch 'lorenzo-contrib' into 'master' add lgmres solver See merge request AmosEgel/smuthi!55 | 23 June 2020, 15:11:20 UTC |
| a2f8f7c | Lorenzo Pattelli | 09 June 2020, 12:54:09 UTC | linear_system: add gcrotmk solver | 09 June 2020, 12:54:09 UTC |
| 1868bf9 | Lorenzo Pattelli | 05 June 2020, 12:16:36 UTC | automatic_parameter_selection: use default angular arrays functions notes: - the initial angular resolution is taken from the simulation object. In principle, this allows to pass the initial angular resolution value from outside. This is a bit different with respect to how other starting values are fed into the automatic parameter selection routine - as of now, evaluate() is still triggering a simulation run even though the convergence of angular resolution relies mostly on a postprocessing step. However, when the angular resolution is updated, this currently reflects also on the initial field expansion, so it is not strictly wrong to re-run the simulation (even though likely useless practically) | 09 June 2020, 10:19:36 UTC |
| d257ee2 | Lorenzo Pattelli | 05 June 2020, 10:57:07 UTC | automatic_parameter_selection: ensure enough rel_diff available values otherwise, it is possible that the search is halted prematurely if the first value already falls within the desired tolerance | 09 June 2020, 10:19:36 UTC |
| 0ae7270 | Lorenzo Pattelli | 31 May 2020, 21:07:30 UTC | default angular arrays: add missing docstrings | 09 June 2020, 10:19:36 UTC |
| 0904ac7 | Lorenzo Pattelli | 31 May 2020, 20:40:07 UTC | set default angular resolution to 0.5 degrees all tests still pass | 09 June 2020, 10:19:36 UTC |
| 39434ae | Lorenzo Pattelli | 31 May 2020, 19:21:39 UTC | initial_field, dissipated_power: remove unknown boolean parameter...? apparently this was not causing problems, though | 09 June 2020, 10:19:36 UTC |
| e79969b | Lorenzo Pattelli | 31 May 2020, 19:07:40 UTC | default angular arrays: keep working on implementation | 09 June 2020, 10:19:36 UTC |
| 6fbabeb | Lorenzo Pattelli | 31 May 2020, 16:39:22 UTC | proposal for default angular arrays: working on implementation | 09 June 2020, 10:19:36 UTC |
| 683669f | Lorenzo Pattelli | 30 May 2020, 17:18:55 UTC | proposal for default angular arrays. implementation still missing | 09 June 2020, 10:19:36 UTC |
| d8a6a92 | Lorenzo Pattelli | 30 May 2020, 09:27:02 UTC | automatic_parameter_selection: add integrated scattered far field detector | 09 June 2020, 10:19:36 UTC |
| 46b80f4 | Lorenzo Pattelli | 29 May 2020, 14:27:50 UTC | typo | 09 June 2020, 10:19:36 UTC |
| a0a9a02 | Lorenzo Pattelli | 29 May 2020, 10:52:44 UTC | converge_l_max: fix bug when target_value is specified the 'problem' here was that when a target_value is provided, one can already check l_max=1 against it, instead of waiting for the l_max=2 value to perform the first relative difference calculation. Failing to recognize this was leading to premature termination of the routine (l_max=1 was often selected) despite tolerance_step=2. | 09 June 2020, 10:19:36 UTC |
| 636f37c | Lorenzo Pattelli | 28 May 2020, 17:51:30 UTC | automatic_parameter_selection: add converge_angular_resolution | 09 June 2020, 10:19:36 UTC |
| 2d2dec7 | Lorenzo Pattelli | 28 May 2020, 17:50:36 UTC | let total_scattering_cross_section use the defaul angular arrays | 09 June 2020, 10:19:36 UTC |
| c64c162 | Lorenzo Pattelli | 28 May 2020, 17:49:09 UTC | automatic_parameter_selection: add a detector relying on angular integration | 09 June 2020, 10:19:36 UTC |
| 97bbb33 | Lorenzo Pattelli | 28 May 2020, 11:52:59 UTC | fix typo | 09 June 2020, 10:19:36 UTC |
| da64cc3 | Lorenzo Pattelli | 09 June 2020, 08:58:33 UTC | linear_system: add lgmres solver | 09 June 2020, 09:36:59 UTC |
| f7aa7ad | Lorenzo Pattelli | 05 June 2020, 16:57:34 UTC | internal_field: allow particle.m_max < particle.l_max | 09 June 2020, 09:36:59 UTC |
| d4faa1d | Amos Egel | 09 June 2020, 06:27:47 UTC | Merge branch 'master' of https://gitlab.com/AmosEgel/smuthi.git | 09 June 2020, 06:27:47 UTC |
| 3475926 | Amos Egel | 09 June 2020, 06:27:36 UTC | test: small change | 09 June 2020, 06:27:36 UTC |
| 87fddad | Amos Egel | 09 June 2020, 06:26:42 UTC | branchpoint correction for initial field contour | 09 June 2020, 06:26:42 UTC |
| 32c550e | Amos Egel | 29 May 2020, 05:24:13 UTC | check circumscribing spheres by default | 29 May 2020, 05:24:13 UTC |
| 5d530f9 | Amos Egel | 28 May 2020, 20:21:42 UTC | Merge branch 'lorenzo-contrib' into 'master' vectorize circumscribing_sphere_disjoint() See merge request AmosEgel/smuthi!53 | 28 May 2020, 20:21:42 UTC |
| b0985b8 | Lorenzo Pattelli | 27 May 2020, 11:57:23 UTC | vectorize circumscribing_sphere_disjoint() | 27 May 2020, 11:57:23 UTC |
| eaffd15 | Lorenzo Pattelli | 25 May 2020, 22:41:09 UTC | fixup! avoid MatplotlibDeprecationWarning associated to the use of axes() | 25 May 2020, 22:41:59 UTC |
| 56b2d9b | Amos Egel | 25 May 2020, 05:34:26 UTC | Merge branch 'lorenzo-contrib' into 'master' update examples to new graphical output syntax See merge request AmosEgel/smuthi!52 | 25 May 2020, 05:34:26 UTC |
| 319eb41 | Lorenzo Pattelli | 24 May 2020, 21:54:01 UTC | avoid MatplotlibDeprecationWarning associated to the use of axes() MatplotlibDeprecationWarning: Adding an axes using the same arguments as a previous axes currently reuses the earlier instance. In a future version, a new instance will always be created and returned. Meanwhile, this warning can be suppressed, and the future behavior ensured, by passing a unique label to each axes instance. | 24 May 2020, 21:54:01 UTC |
| 3a2c535 | Lorenzo Pattelli | 24 May 2020, 21:41:56 UTC | make example scripts compatible with new graphical_output syntax | 24 May 2020, 21:41:56 UTC |
| f777fb4 | Lorenzo Pattelli | 24 May 2020, 21:38:57 UTC | graphical_output: fix strange behavior with direct calls to show_far_fields when plotting the 'bottom' part, the show_opts variable does not have the value you'd expect. I guess this has something to do with the recursive nature of show_far_fields. This alternative way of handling the show_opts variable is more synthetic and safer against this kind of problems. | 24 May 2020, 21:38:57 UTC |
| b47bd67 | Lorenzo Pattelli | 24 May 2020, 18:16:12 UTC | graphical_output: fix missing default labels for far-field quantities | 24 May 2020, 18:16:12 UTC |
| 84ddd2c | Amos Egel | 24 May 2020, 08:23:53 UTC | check circumscribins spheres - apply Konstantin Ladutenko's code changes | 24 May 2020, 08:23:53 UTC |
| 83490ac | Amos Egel | 24 May 2020, 08:11:26 UTC | Merge branch 'master' of https://gitlab.com/AmosEgel/smuthi | 24 May 2020, 08:11:26 UTC |
| 1df986b | Amos Egel | 24 May 2020, 07:46:08 UTC | Merge branch 'lorenzo-contrib' into 'master' graphical_output: fix typo and fix bug with LogNorm limits See merge request AmosEgel/smuthi!51 | 24 May 2020, 07:46:08 UTC |
| e9dd0be | Lorenzo Pattelli | 23 May 2020, 18:28:30 UTC | graphical_output: ensure that all plots are shown on show_plots=True | 23 May 2020, 18:28:30 UTC |
| 43981ed | Lorenzo Pattelli | 23 May 2020, 09:41:53 UTC | update example script on automatic parameter selection to comply with the recent changes in graphical output syntax | 23 May 2020, 09:41:53 UTC |
| 5218d72 | Lorenzo Pattelli | 23 May 2020, 09:29:08 UTC | graphical_output: fix typo and fix bug with LogNorm limits | 23 May 2020, 09:29:08 UTC |
| 031f551 | Amos Egel | 23 May 2020, 08:48:08 UTC | Merge branch 'lorenzo-contrib' into 'master' automatic_parameter_selection: fix bug when select_neff_max=False See merge request AmosEgel/smuthi!50 | 23 May 2020, 08:48:08 UTC |
| 6d22e65 | Lorenzo Pattelli | 23 May 2020, 08:26:57 UTC | automatic_parameter_selection: fix bug when select_neff_max=False | 23 May 2020, 08:26:57 UTC |
| 6c8874e | Amos Egel | 23 May 2020, 08:17:56 UTC | Merge branch 'lorenzo-contrib' into 'master' refactoring automatic_parameter_selection See merge request AmosEgel/smuthi!49 | 23 May 2020, 08:17:56 UTC |
| f0e5f67 | Amos Egel | 23 May 2020, 08:10:15 UTC | docstring: tiny correction | 23 May 2020, 08:10:15 UTC |
| 81a4638 | Lorenzo Pattelli | 23 May 2020, 06:33:46 UTC | automatic_parameter_selection: grant user access to neff_max_offset starting from a higher value can save quite some time, especially when one is running the selection multiple times (e.g., for every wavelength in a wavelength scan) | 23 May 2020, 07:48:11 UTC |
| 00ad816 | Amos Egel | 23 May 2020, 07:25:38 UTC | neff_max_selection: return current_value instead of new_value | 23 May 2020, 07:48:11 UTC |
| 67d0064 | Amos Egel | 23 May 2020, 07:23:12 UTC | Apply suggestion to smuthi/utility/automatic_parameter_selection.py | 23 May 2020, 07:48:11 UTC |
| a57b7c2 | Amos Egel | 23 May 2020, 06:23:57 UTC | small change (only in comment) | 23 May 2020, 07:48:11 UTC |
| 97b8ed9 | Lorenzo Pattelli | 22 May 2020, 20:39:57 UTC | delete old automated_lmax_mmax_selection method from particle class | 23 May 2020, 07:48:11 UTC |
| 40beb9c | Lorenzo Pattelli | 22 May 2020, 19:24:01 UTC | automatic_parameter_selection: remember best detector estimate from neff selection the latest detector value obtained during the neff selection routine is our best guess on the 'true' value of the detector since neff selection is typically performed with a smaller allowed tolerance | 23 May 2020, 07:48:11 UTC |
| 02744f0 | Lorenzo Pattelli | 22 May 2020, 19:21:17 UTC | fixup! automatic_parameter_selection: introduce tolerance_steps parameter | 22 May 2020, 19:21:17 UTC |
| 6093cf7 | Lorenzo Pattelli | 22 May 2020, 17:45:32 UTC | fixup! automatic_parameter_selection: introduce tolerance_steps parameter | 22 May 2020, 17:45:32 UTC |
| 60cd935 | Lorenzo Pattelli | 21 May 2020, 19:50:08 UTC | automatic_parameter_selection: update all particles at once | 21 May 2020, 19:50:08 UTC |
| 12a14e2 | Lorenzo Pattelli | 21 May 2020, 15:05:56 UTC | automatic_parameter_selection: introduce tolerance_steps parameter | 21 May 2020, 17:10:38 UTC |
| 3c43e08 | Lorenzo Pattelli | 21 May 2020, 15:03:51 UTC | automatic_parameter_selection: allow used to provide tolerance reduction factor | 21 May 2020, 15:03:51 UTC |
| 5599415 | Amos Egel | 17 May 2020, 14:11:53 UTC | Merge branch 'lorenzo-contrib' into 'master' provide replacement for removed numba cffi_support module See merge request AmosEgel/smuthi!48 | 17 May 2020, 14:11:53 UTC |
| ed46cb8 | Lorenzo Pattelli | 17 May 2020, 10:59:17 UTC | provide replacement for removed numba cffi_support module | 17 May 2020, 10:59:17 UTC |
| 509b7bb | Amos Egel | 16 May 2020, 08:11:45 UTC | Merge branch 'lorenzo-contrib' into 'master' automatic_parameter_selection: add missing NoneType check on axes object See merge request AmosEgel/smuthi!47 | 16 May 2020, 08:11:45 UTC |
| ba0b574 | Lorenzo Pattelli | 14 May 2020, 18:07:04 UTC | automatic_parameter_selection: add missing NoneType check on axes object | 14 May 2020, 18:07:04 UTC |
| 144424f | Amos Egel | 14 May 2020, 09:02:50 UTC | Merge branch 'lorenzo-contrib' into 'master' add optional plotting for automatic parameter selection convergence See merge request AmosEgel/smuthi!46 | 14 May 2020, 09:02:50 UTC |
| 427f932 | Lorenzo Pattelli | 13 May 2020, 23:25:39 UTC | automatic_parameter_selection: add missing Args string | 13 May 2020, 23:25:39 UTC |
| 4bd6128 | Lorenzo Pattelli | 13 May 2020, 23:20:52 UTC | automatic_parameter_selection: plot all points, add missing neff_max panels | 13 May 2020, 23:20:52 UTC |
| e340bf4 | Lorenzo Pattelli | 13 May 2020, 18:56:27 UTC | automatic parameter selection: plot also initial detector value | 13 May 2020, 18:56:27 UTC |
| 6372de2 | Lorenzo Pattelli | 13 May 2020, 18:54:51 UTC | automatic_parameter_selection: fix displayed tolerance value during neff selection | 13 May 2020, 18:54:51 UTC |
| f81da00 | Lorenzo Pattelli | 13 May 2020, 16:44:20 UTC | minor refactoring | 13 May 2020, 16:44:20 UTC |
| 8eaf682 | Amos Egel | 13 May 2020, 16:16:19 UTC | fix small bug | 13 May 2020, 16:16:19 UTC |
| 92efe00 | Lorenzo Pattelli | 13 May 2020, 15:41:32 UTC | automatic_parameter_selection: add plot line markers | 13 May 2020, 16:06:17 UTC |
| 6a8e48d | Lorenzo Pattelli | 13 May 2020, 15:26:13 UTC | add formatted output message as convergence subplot title | 13 May 2020, 16:06:17 UTC |
| 8b2ce41 | Lorenzo Pattelli | 12 May 2020, 19:54:14 UTC | change plot titles, add reference lines for tolerance values, DRY code | 13 May 2020, 16:06:17 UTC |
| d5053e2 | Amos Egel | 12 May 2020, 16:36:21 UTC | Merge branch 'master' of https://gitlab.com/AmosEgel/smuthi.git | 12 May 2020, 16:36:21 UTC |
| 71c7dec | Amos Egel | 12 May 2020, 16:36:12 UTC | doc: small fixup | 12 May 2020, 16:36:12 UTC |
| 91a108b | Lorenzo Pattelli | 11 May 2020, 13:41:14 UTC | WIP: add optional plotting for automatic parameter selection convergence | 11 May 2020, 13:41:14 UTC |
| 65c6b6b | Amos Egel | 10 May 2020, 13:06:52 UTC | Merge branch 'lorenzo-contrib' into 'master' show_near_field: use native imshow interpolation, add data_format flag See merge request AmosEgel/smuthi!45 | 10 May 2020, 13:06:52 UTC |
| ccecf4f | Lorenzo Pattelli | 04 May 2020, 12:20:21 UTC | graphical_output: apply save, data and plot opts to far_field remove export() method from FarField class | 04 May 2020, 16:36:44 UTC |
| 4e20b9d | Lorenzo Pattelli | 04 May 2020, 09:29:00 UTC | show_near_field: expand doc string | 04 May 2020, 09:29:00 UTC |
| 283fd04 | Amos Egel | 03 May 2020, 15:26:44 UTC | fix bug in total_scattering_cross_section add convenience function for angular resolution reduce default angular resolution of total_scattering_cross_section to 1/2 degree | 03 May 2020, 15:26:44 UTC |
| d495574 | Lorenzo Pattelli | 01 May 2020, 14:09:30 UTC | show_near_field: use native imshow interpolation, add data_format flag also: * pass arguments to inner imshow and savegif calls * allow multiple calls to imshow and savefig with different settings * remove arguments that are now superseded by imshow settings (e.g., max_field -> vmax) * remove arguments that are now superseded by savefig settings (e.g., save_animations -> 'format':'gif') * cosmetic changes to axis labels * switch temporarily to a non-gui matplotlib backend if show_plots=False | 03 May 2020, 10:10:19 UTC |
| 5d4cc39 | Amos Egel | 02 May 2020, 17:22:11 UTC | small change in print-out | 02 May 2020, 17:22:11 UTC |
| 07682f8 | Amos Egel | 02 May 2020, 17:13:05 UTC | NFM-DS: - allow quadruple precision - change standard settings fixes #53 | 02 May 2020, 17:13:05 UTC |
| 6fcf72c | Amos Egel | 02 May 2020, 10:04:21 UTC | reasonable_neff_waypoints: separately treat case neff_imag = 0 (relevant for Gaussian beams) | 02 May 2020, 10:04:21 UTC |
| 109179d | Amos Egel | 02 May 2020, 10:02:42 UTC | automatic parameter selection: - start each l_max run from 1 - don't optimize m_max during neff_max run | 02 May 2020, 10:02:42 UTC |
| 0b249f3 | Amos Egel | 02 May 2020, 08:36:58 UTC | Add default return values to Particle.is_inside and Particle.is_outside (to suppress errors until issue #50 is fixed) | 02 May 2020, 08:36:58 UTC |
| 2a5ace8 | Amos Egel | 01 May 2020, 09:05:13 UTC | Merge branch 'lorenzo-contrib' into 'master' plot_particles: show plane/particle sections See merge request AmosEgel/smuthi!44 | 01 May 2020, 09:05:13 UTC |
| c58eab9 | Lorenzo Pattelli | 29 April 2020, 23:53:06 UTC | graphical_output: remove max_particle_distance, show plane-particle intersections | 30 April 2020, 10:58:15 UTC |
| ec746be | Lorenzo Pattelli | 26 April 2020, 22:20:32 UTC | many_particles tutorial: fix np.arange endpoints | 29 April 2020, 09:12:49 UTC |
| 881fe3a | Amos Egel | 13 April 2020, 12:11:53 UTC | doc: example on automatic parameter selection closes #45 and #46 | 13 April 2020, 12:11:53 UTC |
| e9f5172 | Amos Egel | 12 April 2020, 21:54:48 UTC | docs: console screenshot | 12 April 2020, 21:54:48 UTC |
| d286cf5 | Amos Egel | 12 April 2020, 21:49:23 UTC | doc: some work on examples section | 12 April 2020, 21:49:23 UTC |
| 131a9b7 | Amos Egel | 12 April 2020, 15:30:11 UTC | doc: update apidoc | 12 April 2020, 15:30:11 UTC |
| 540e756 | Amos Egel | 12 April 2020, 15:29:58 UTC | update autoparam unittest | 12 April 2020, 15:29:58 UTC |
| 9221234 | Amos Egel | 12 April 2020, 15:18:41 UTC | doc: restructure api section | 12 April 2020, 15:18:41 UTC |
| 746640d | Amos Egel | 12 April 2020, 14:58:31 UTC | update api | 12 April 2020, 14:58:31 UTC |
| 8066681 | Amos Egel | 12 April 2020, 14:53:44 UTC | add images | 12 April 2020, 14:53:44 UTC |
| ac688fd | Amos Egel | 12 April 2020, 14:48:51 UTC | Merge branch 'master' of https://gitlab.com/AmosEgel/smuthi | 12 April 2020, 14:48:51 UTC |
| 794ece0 | Amos Egel | 12 April 2020, 14:47:54 UTC | user guide section on automatic parameter selection | 12 April 2020, 14:47:54 UTC |
| dc4ba3c | Amos Egel | 11 April 2020, 17:00:04 UTC | Merge branch 'hdf5_output' into 'master' extend hdf5 output to far field quantities See merge request AmosEgel/smuthi!43 | 11 April 2020, 17:00:04 UTC |
| af348d4 | Amos Egel | 08 April 2020, 10:14:24 UTC | fix tests | 08 April 2020, 10:14:24 UTC |
