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10 December 2020, 08:13:14 UTC
Revision f267e82b2edd18a28926b84fc23cb2b55bdbc9c3 authored by Ian Mellis on 05 January 2016, 20:38:56 UTC, committed by Ian Mellis on 05 January 2016, 20:38:56 UTC 
Updated runHTSeq.sh to call shared version of hg19.gtf, rather than Syd's in CancerSeq repo. Made a note on Rajlabseqtools pipeline doc.
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Tip revision: f267e82b2edd18a28926b84fc23cb2b55bdbc9c3 authored by Ian Mellis on 05 January 2016, 20:38:56 UTC
Updated runHTSeq.sh to call shared version of hg19.gtf, rather than Syd's in CancerSeq repo. Made a note on Rajlabseqtools pipeline doc.
Tip revision: f267e82
defineVariablesGenerateCounts.sh 

EXPERIMENT="wm983bLdB_run2"

codeHomeDir=/home/shaffers

PROJECT="CancerSeq"

cmdToRun="$codeHomeDir/rajlabseqtools/Utilities/stepThreeGenerateCounts/allGenerateCounts.sh $EXPERIMENT $codeHomeDir $PROJECT"

echo "$cmdToRun"
eval "$cmdToRun"
echo "done"
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