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https://github.com/arjunrajlaboratory/RajLabSeqTools
10 December 2020, 08:13:14 UTC
Revision f267e82b2edd18a28926b84fc23cb2b55bdbc9c3 authored by Ian Mellis on 05 January 2016, 20:38:56 UTC, committed by Ian Mellis on 05 January 2016, 20:38:56 UTC 
Updated runHTSeq.sh to call shared version of hg19.gtf, rather than Syd's in CancerSeq repo. Made a note on Rajlabseqtools pipeline doc.
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Tip revision: f267e82b2edd18a28926b84fc23cb2b55bdbc9c3 authored by Ian Mellis on 05 January 2016, 20:38:56 UTC
Updated runHTSeq.sh to call shared version of hg19.gtf, rather than Syd's in CancerSeq repo. Made a note on Rajlabseqtools pipeline doc.
Tip revision: f267e82
submitGenerateCounts.sh 
#!
# run from within repo
projectName="CancerSeq"

scriptFile=/project/arjunrajlab/$projectName/repo/SubmissionScripts/stepThreeGenerateCounts/defineVariablesGenerateCounts.sh
bsub -J "generateCounts[1-24]" -o out.%I -e err.%I < $scriptFile
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