Revision f3da2bd424e61627ce943892037737ce6e1f827d authored by hariszaf on 13 August 2020, 16:11:28 UTC, committed by GitHub on 13 August 2020, 16:11:28 UTC
* Create setup_hz.py * Create bindings_hz.cpp * Create volestipy_hz.pyx * Create bindings_hz.h * Update bindings_hz.h * Update bindings_hz.cpp * Create volestipy_old.pyx * Delete volestipy_hz.pyx * Create bindings_old.cpp * Delete bindings_hz.cpp * Update bindings.cpp * Create bindings_old.h * Delete bindings_hz.h * Create setup_old.py * Delete setup_hz.py * Update setup.py * Update volestipy.pyx * Update bindings.h * Update volestipy.pyx * Update bindings.cpp * Update bindings.h * Update setup.py * Update bindings.h * Update setup.py * Update setup_old.py * Update bindings.cpp * Update setup.py * Update setup.py * Update volestipy.pyx * Update test1.py * Create test1_old.py * Update test1.py * Update volestipy.pyx * Update bindings.cpp * Update bindings.h * Update volestipy.pyx * Update bindings.cpp * Update bindings.h * Update bindings.h * Update bindings.cpp * Update bindings.h * Update bindings.cpp * Update volestipy.pyx * Update volestipy.pyx * Update bindings.cpp * Update bindings.h * Update bindings.h * Update bindings.cpp * Update volestipy.pyx * Update bindings.h * Update bindings.cpp * Update bindings.h * Update setup.py * Update bindings.cpp * Update bindings.h * Update bindings.cpp * Update volestipy.pyx * Update bindings.cpp * Update bindings.h * Update bindings.cpp * Update volestipy.pyx * Update volume_cb_hpolytope.cpp * Update test1.py * Update bindings.cpp * Update test1.py * Update volestipy.pyx * Update bindings.cpp * Update bindings.h * Update bindings.cpp * Update volestipy.pyx * Update volestipy.pyx * Update bindings.cpp * Update bindings.h * Create .gitignore * Delete test1_old.py * Delete setup_old.py * Delete bindings_old.h * Delete bindings_old.cpp * Delete volestipy_old.pyx * Update volestipy.pyx * Update bindings.cpp * Update bindings.h * Update .gitignore * Update volume_cb_hpolytope.cpp * Update test1.py * Update test2.py * Update bindings.h * Update setup.py * Update credits.md * on .gitignore: files on test/Testing/Temporary/ were removed from the .gitignore file * first attempt - not working - for rounding * rounding function: does not work; trying to figure it out * round_val now works; still new_A and new_b need to be included * Create metabolic_net_pipeline.ipynb * Update metabolic_net_pipeline.ipynb * Update metabolic_net_pipeline.ipynb * Update metabolic_net_pipeline.ipynb * Update metabolic_net_pipeline.ipynb * Update metabolic_net_pipeline.ipynb * Update volestipy.pyx * Update bindings.cpp * Create test_rounding.py * Create test1.py * Create test2.py * Delete test2.py * Update test1.py * Create metabolic_net_pipeline-checkpoint.ipynb * Update setup.py * Update .gitignore * Delete test1.py git rm test1.py * Delete test2.py git rm test2.py * Update bindings.h new class for the preprocessing and the get_full_dimensional_polytope() function in the bindings.h * Update bindings.cpp new class for the preprocessing and the get_full_dimensional_polytope() function in the bindings.cpp * Update volestipy.pyx new class for the preprocessing and the get_full_dimensional_polytope() function in the volestipy.pyx * Update bindings.h working on the lowDimHPolytopeCPP class - just a draft with the main ideas, not a stable version * Update bindings.cpp working on the lowDimHPolytopeCPP class - just a draft with the main ideas, not a stable version * Update volestipy.pyx working on the lowDimHPolytopeCPP class - just a draft with the main ideas, not a stable version * Update bindings.h set member variables for lowDimHPolytopeCPP class * Update bindings.cpp remove unessecary vars * Update volestipy.pyx remove unecessary vars in self.full_dim_polytope * Update bindings.h build the instructor for the full_dimensional_polytope() function * Update bindings.cpp 1st draft for the get_full_dimensional_polytope() function * Update volestipy.pyx 1st draft for the python interface of the get_full_dimensional_polytope() function * Update bindings.h using transpose matrices for N and A_full removing the "extra" from the shift and b_full vectors as it is not needed * Update bindings.cpp 2nd draft for the lowDimHPolytopeCPP class. we changed the N and A_full matrices to transpose to feed them in the cpp file like this. we removed the _extra from the vectors * Update volestipy.pyx 2nd draft for the lowDimHPolytopeCPP class. changed "_extra" vectors when needed. first draft that actually compiles * Create test_get_full_dim_polytope.py test file for the get_full_dimensional_polytope function not ready yet * Update test_get_full_dim_polytope.py changed the Aeq * Update test_get_full_dim_polytope.py final test for the get_full_dimensional_polytope() function * Update bindings.cpp print the N transpose and the full A transpose matrices from the C++ code * Update volestipy.pyx Attention! What C++ returns is the transpose matrix. Thus, the [i,j] element of the full A is the [j,i] of what C++ returns. That is what we fixed here * Update test_get_full_dim_polytope.py print all the outputs of the get_full_dimensional_polytope() function * Update bindings.cpp remove test prints * Update volestipy.pyx remove test printing statements add all the output in the return statement on the get_full_dim_polytope() improved comments * Delete metabolic_net_pipeline.ipynb remove the jupyter notebook * Delete metabolic_net_pipeline-checkpoint.ipynb remove the hidden directory for the jupyter notebook * Update volestipy.pyx Exceptions for the low_dim_polytope_cpp constructor added. Deletion of the A_full and the b_full variables after the initialization of the object. * Update bindings.h CheBall was removed from the case of the lowDimHPolytopeCPP
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cran_gen | ||
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.gitignore | -rw-r--r-- | 48 bytes |
CODE_OF_CONDUCT.md | -rw-r--r-- | 3.3 KB |
CONTRIBUTING.md | -rw-r--r-- | 7.9 KB |
LICENSE | -rw-r--r-- | 7.5 KB |
README.md | -rw-r--r-- | 3.0 KB |
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