| f4a9a45 | Lingfan Yu | 05 December 2018, 20:04:27 UTC | [Doc] Fix hyperlink in tutorial of tutorals (#260) * fix all code tutorial links and typos in texts * sse readme format * fix * sse paper link * gat readme * fix | 05 December 2018, 20:04:27 UTC |
| e557ed8 | Minjie Wang | 05 December 2018, 19:35:14 UTC | [Doc][Model] example folder doc and model summary (#259) * update example readme * mx example readme * add results in readme * mx rgcn readme | 05 December 2018, 19:35:14 UTC |
| 899d125 | Da Zheng | 05 December 2018, 18:41:33 UTC | Add tests for MXNet and throw NotImplementedError if not implemented (#258) * add more unit tests for mxnet. * fix. | 05 December 2018, 18:41:33 UTC |
| 2c5b48a | Yizhi Liu | 05 December 2018, 18:27:59 UTC | [Model][MXNet] RGCN Entity Classification (#246) * entity classify work for examples * add loop_msg * remove wrong assert * remove one reshape * add readme * add MRR * remove mrr from entity task | 05 December 2018, 18:27:59 UTC |
| 7c7cc7e | Da Zheng | 05 December 2018, 18:05:10 UTC | [sampler] Adjust the sampler API for the future extension. (#243) * return seed ids. * fix tests. * implement. | 05 December 2018, 18:05:10 UTC |
| 40506ec | Da Zheng | 05 December 2018, 17:55:59 UTC | use openmp to accelerate nid mapping (#242) * use openmp. * update cmake. | 05 December 2018, 17:55:59 UTC |
| 378c264 | Lingfan Yu | 05 December 2018, 17:32:10 UTC | [Model] Fix GCN Normalization (#249) * WIP * lr -> 0.01 * new cora dataset * normalization code * minor format change * normalization factor for deg bucket | 05 December 2018, 17:32:10 UTC |
| 21255b6 | Minjie Wang | 05 December 2018, 17:20:59 UTC | [Bugfix] tolist and dependencies in `dgl.data` (#239) * change Index.tolist -> Index.tonumpy; fix bug in traversal; remove dependencies in data * fix import * fix __all__ and some docstring | 05 December 2018, 17:20:59 UTC |
| eafcb7e | Minjie Wang | 05 December 2018, 09:32:54 UTC | [Bugfix][MXNet] Fix edge order and builtin max bug in mx (#247) * Fix edge order and builtin max bug in mx * fix as requested | 05 December 2018, 09:32:54 UTC |
| 71fa26a | VoVAllen | 05 December 2018, 07:40:32 UTC | Fix windows line seprator problems (#248) | 05 December 2018, 07:40:32 UTC |
| 274e108 | Lingfan Yu | 04 December 2018, 22:52:00 UTC | [Doc] API doc string for many components (#245) * builtin function docstring * init docstring * view docstring * add init to index and fix * node /edge feature * Example -> Examples * fix func hyperlink * traversal * fix * from/to_networkx docstring * minor * fix duplicate label * comment about tensor framework * from scipy sparse matrix * fix format errors | 04 December 2018, 22:52:00 UTC |
| 7cca500 | Mufei Li | 04 December 2018, 21:51:46 UTC | [Doc] Computing with DGLGraph (#212) * Docs for graph computing * Docs for graph computing * Fix * WIP * update the docstring | 04 December 2018, 21:51:46 UTC |
| c99f423 | Da Zheng | 04 December 2018, 21:46:26 UTC | [Sampler] extend sampler (#238) | 04 December 2018, 21:46:26 UTC |
| 455ea48 | Lingfan Yu | 04 December 2018, 21:19:12 UTC | [Bugfix] Conversion between networkx and DGLGraph (#244) * copy feature to networkx * fix to_network for multi-graph * test case for nx conversion * iterate over Index returns plain int instead of numpy.int64 * fix from_network multi-edge bug | 04 December 2018, 21:19:11 UTC |
| 31800e7 | VoVAllen | 04 December 2018, 20:05:37 UTC | [Doc] Fix typo at doc index (#241) Fix typo at doc index | 04 December 2018, 20:05:37 UTC |
| a5a35d1 | Da Zheng | 04 December 2018, 17:24:32 UTC | [Sampler] improve random shuffle performance in sampler (#228) * fix. * make it generic. * add the API. * fix. * remove mxnet. | 04 December 2018, 17:24:32 UTC |
| 78269ce | Da Zheng | 04 December 2018, 17:07:05 UTC | [Doc] Update GCN README.md (#224) * update readme. * update readme | 04 December 2018, 17:07:05 UTC |
| 16cc528 | VoVAllen | 04 December 2018, 15:46:49 UTC | [Doc] Improve Capsule with Jinyang & Fix wrong tutorial level layout (#236) * improve capsule tutorial with jinyang * fix wrong layout of second-level tutorial * delete transformer | 04 December 2018, 15:46:49 UTC |
| dafe467 | Da Zheng | 04 December 2018, 05:37:18 UTC | [Bug][MXNet] fix an API in immutable graph index. (#233) | 04 December 2018, 05:37:18 UTC |
| b1e8d95 | HQ | 03 December 2018, 22:59:50 UTC | [Doc] LGNN tutorial (#210) * tutorial notebook added * lg tutorial cleaned up * dataset scaffold * move dataloader to data * fix model * remove todo * utils seperated * [model]line graph new implementation + tutorial + binary sub graph dataset * [tutorial] line graph sphinx scaffold * [tutorial] lgnn tutorial improved * [tutorial] remove notebook * [tutorial] fix lg and gcn links * [tutorial] fix random seed * [tutorial]fix * WIP * code refactor done * new mini dataset; remove utils code * fix * word fix * fix link * minor fix * minor fix * minor fix | 03 December 2018, 22:59:50 UTC |
| 10e18ed | Minjie Wang | 03 December 2018, 22:31:35 UTC | [Doc] overview and others (#222) * model tutorials overview * update the 1_first * revised overview and summarized "what is DGL" in glance | 03 December 2018, 22:31:35 UTC |
| 2c170a8 | Da Zheng | 03 December 2018, 22:16:35 UTC | [Graph][Bugfix] Fix the API of map_to_subgraph_nid (#226) * correct vid mapping API. * fix sse. | 03 December 2018, 22:16:35 UTC |
| 419ffbd | Gan Quan | 03 December 2018, 19:33:21 UTC | [Doc] Installation guide (#223) * docstrings for graph mutation & queries * [Doc] contrib.sampler. (#200) * subgraph docs * updates * added installation guide * style fix * package name fixes * adding it back... * fix as requested * adding link * mac os build instructions * OS -> macOS | 03 December 2018, 19:33:21 UTC |
| b0c76d4 | Lingfan Yu | 03 December 2018, 18:28:22 UTC | [Bug] fix __slots__ in view.py (#230) | 03 December 2018, 18:28:22 UTC |
| b98dc92 | Lingfan Yu | 03 December 2018, 18:01:27 UTC | [Model] Relational GCN (#55) * data preprocessing for rgcn * edge subgraph * WIP: RGCN * use edge feature in spmv * fix bugs * match AIFB accuracy * match mutag accuracy * avoid materializing in featureless case * remove untouched nodes and relabel nodes * fix python list concatenate overhead * sparsely store edge types * refactor entity classify code for clean link prediction implementation * further refactor code * refactoring * rgcn block decompose layers * link predict dataset * link predict model and eval code * dropout, self-loop, regularization, etc, plus bug fixes * update to new api * dataset update * bugs, WIP, need to impl early stopping and filtered metrics * instruction to run, and minor * group conv and early stop * clean slow code * some code comments * use new api in model code * change data preprocessing * entity classify model * WIP * move dgl graph out of model * hot fix for extract zip * fix link predict model * use latest dgl apis * still have memory issue... * bug fix and move inference to cpu * move rgcn data processing to contrib * th.allclose -> U.allclose * minor change in readme * fix memory issue in entity classify * fix and testing code for link predict * fix entity classify * clean up * fix comments * revert erroneous git merge changes * code clean up and more comments * minor * dependent package version | 03 December 2018, 18:01:27 UTC |
| 8918cce | Da Zheng | 03 December 2018, 16:04:11 UTC | [MXNet] add unit tests for mxnet (#227) [MXNet] add unit tests for mxnet | 03 December 2018, 16:04:11 UTC |
| 6f4898a | yifeim | 03 December 2018, 03:17:37 UTC | [Model][MXNet] gcn normalization and compare with mlp baselines (#196) * clean up pr-188 and resubmit * address Da comments | 03 December 2018, 03:17:37 UTC |
| 52ed09a | Lingfan Yu | 03 December 2018, 00:14:39 UTC | [Bug] Fix inplace update (#221) * inplace write row op and executor * update scheduler and graph to use inplace write * fix * fix bug * test case for inplace * fix bugs for inplace apply node/edge * fix comments * th.allclose -> U.allclose | 03 December 2018, 00:14:39 UTC |
| dd26ff1 | Da Zheng | 02 December 2018, 19:47:50 UTC | [CI] change the mxnet installation in docker. (#218) | 02 December 2018, 19:47:50 UTC |
| 5680f8d | Gan Quan | 02 December 2018, 19:41:25 UTC | [DOC] Documentation strings for graph mutation, queries, and subgraphing (#207) * docstrings for graph mutation & queries * [Doc] contrib.sampler. (#200) * subgraph docs * updates | 02 December 2018, 19:41:25 UTC |
| 57daf9c | Minjie Wang | 02 December 2018, 18:39:04 UTC | [Graph] small fix on the all index (#219) | 02 December 2018, 18:39:04 UTC |
| 57b07fc | Da Zheng | 02 December 2018, 17:43:25 UTC | [Model] Accelerate SSE (#172) * lazy eval edge ids. * parallelize node id lookup. * fix a bug. * use mxnet for index. * use update_all in the subgraph training. * sample neighbors. * Revert "parallelize node id lookup." This reverts commit e661f69bb06cb5a7c246f0e106f245e27800e220. * update README. * cache subgraphs. * support all degrees. * cache adj in CPU. * fix a bug in sse. * print. * raise error on mutable graphs. * measure train time per epoch. * fix a bug in graph_index. * remove readonly in DGLSubGraph. * cache subgraph properly. * accelerate getting adjacency. * split infer. * lazy eval edges. * specify inference mode. * update for new sampler. * use new mxnet sampling api. * fix indent. * remove profiling code. * remove mxnet from sampler. * return a lambda function for graph edges. * add docs for immutable subgraph. * Revert "return a lambda function for graph edges." This reverts commit 0de5d7f100e230c518a3fb8976a6227f474d09ee. * get parent_eid. | 02 December 2018, 17:43:25 UTC |
| 5278220 | Haibin Lin | 02 December 2018, 12:48:29 UTC | update s3 links (#215) | 02 December 2018, 12:48:29 UTC |
| ac932c6 | Gan Quan | 02 December 2018, 08:32:01 UTC | [Model] Junction Tree VAE update (#157) * cherry picking optimization from jtnn * adding official code. TODO: fix DGLMolTree * updating to current api. vae test still failing * reverting to list stacking * reverting to list stacking * cleaning x flags (stupid windows) * cleaning x flags (stupid windows) * adding stats * optimization * updating dgl stats * update again * more optimization * looks like computation is faster * removing profiling code * cleaning obsolete code * remove comparison warning * readme update * official implementation got a lot faster * minor fixes * unbatch by slicing frames * working around unbatch * reduce pack * oops * support frame read/write with slices * reverting back to readout as unbatch-by-slicing slows down backward * reverting to unbatch by splitting; slicing is unfriendly to backward * replacing lru cache with static object factory * cherry picking optimization from jtnn * unbatch by slicing frames * reduce pack * oops * support frame read/write with slices * reverting to unbatch by splitting; slicing is unfriendly to backward * replacing lru cache with static object factory * replacing Scheme object with namedtuple * forgot the find edges interface * subclassing namedtuple * updating to the latest api spec * bugfix * bfs with edges * dfs toy test case * clean up * style fix * bugfix * update to latest api; include traversal * replacing with readout * simplify decoder * oops * cleanup * reducing number of sets * more speed up * profile results * random fixes * fixing tvmarray handling incontiguous dlpack input * fancier dataloader * fix a potential context mismatch * todo: support pickling or using scipy in multiprocessing load * pickling support * resorting to suggested way of pickling * custom attribute pickling check * working around a weird pytorch pickling bug * including partial frame case * enabling multiprocessing dataloader * pickling everything now * really works * oops * updated profiling results * cleanup * fix as requested * cleaning random blank lines * removing profiler outputs * starting decoding * testing, WIP * tree decoding * graph decoding, WIP * graph decoding works * oops * fixing legacy apis * trimming number of candidate structures * sampling cleanups * removing comparison test * updated description | 02 December 2018, 08:32:01 UTC |
| 4682b76 | Gan Quan | 02 December 2018, 08:12:45 UTC | fixing stupid segfault in edge_ids (#216) | 02 December 2018, 08:12:45 UTC |
| 168794c | Lingfan Yu | 02 December 2018, 02:04:39 UTC | remove text using code line numbers (#217) | 02 December 2018, 02:04:39 UTC |
| 7156c71 | Minjie Wang | 02 December 2018, 00:03:57 UTC | [Doc] new at glance doc draft (#214) * WIP * new at glance | 02 December 2018, 00:03:57 UTC |
| 53ea03a | Lingfan Yu | 01 December 2018, 23:58:56 UTC | [Doc] Fix doc bug and warning (#213) * fix dgmg tutorial indentation * bug in incidence_matrix docstring * remove print | 01 December 2018, 23:58:56 UTC |
| 0f121ee | Lingfan Yu | 01 December 2018, 19:58:13 UTC | [Doc] RGCN tutorial (#206) * rgcn tutorial * data processing for rgcn * many fix * requirements for rgcn tutorial * fix comments * description of rgcn dataset * author * bug fix * move all dataset to s3 | 01 December 2018, 19:58:13 UTC |
| cccc233 | Haibin Lin | 01 December 2018, 19:45:30 UTC | [Dataset] update s3 links (#209) | 01 December 2018, 19:45:30 UTC |
| e02acc4 | Mufei Li | 01 December 2018, 05:32:43 UTC | [Doc] Tutorial production for DGMG (#204) | 01 December 2018, 05:32:43 UTC |
| 70dc7cd | Haibin Lin | 01 December 2018, 04:53:23 UTC | [Doc] Dgl glance tutorial improvement (#197) * update dgl at a glance * update title * Update 1_first.py | 01 December 2018, 04:53:23 UTC |
| bcf8e11 | Minjie Wang | 01 December 2018, 04:44:40 UTC | [Bugfix][CI] force download data everything (#208) * poke ci * poke again * force download data everytime | 01 December 2018, 04:44:40 UTC |
| 91141a9 | VoVAllen | 01 December 2018, 00:44:55 UTC | [Dataset] Move file from dropbox to s3 (and fix ci fail due to sst dataset) (#205) * move file from dropbox to s3 * fix ci and move sst to s3 * remove blank line | 01 December 2018, 00:44:55 UTC |
| c80dc5e | Zihao Ye | 01 December 2018, 00:39:49 UTC | [model] Tree-LSTM update & hotfix(dropbox link) (#202) * change the signature of node/edge filter * upd filter * Support multi-dimension node feature in SPMV * stable version * hotfix * upd tutorial * upd README | 01 December 2018, 00:39:49 UTC |
| 3a0f86a | Mufei Li | 30 November 2018, 16:40:22 UTC | [Doc] data (#198) * Fix dataset * Track data APIs | 30 November 2018, 16:40:22 UTC |
| 485f6d3 | Mufei Li | 30 November 2018, 05:38:58 UTC | [Doc] udf (#195) * Docstring for udf * Track udf docs * Improve * Improved * Delete udf.py * Improve | 30 November 2018, 05:38:58 UTC |
| 9e82617 | Haibin Lin | 30 November 2018, 01:59:13 UTC | [Doc] Minor doc update for mxnet/immutable_graph_index (#194) | 30 November 2018, 01:59:13 UTC |
| 41c9c3b | Mufei Li | 29 November 2018, 17:23:10 UTC | [Doc] Fix batched_graph doc (#193) | 29 November 2018, 17:23:10 UTC |
| 8dc6784 | Mufei Li | 29 November 2018, 14:53:16 UTC | [Doc] docstring for BatchedDGLGraph + some fix (#184) * Update doc * Update batched_graph.py * Fix * Fix * Fix * Fix | 29 November 2018, 14:53:16 UTC |
| e17c41c | VoVAllen | 29 November 2018, 14:40:21 UTC | [Model][Tutorial] Fix capsule memory leak (#185) * fix memory leak & Remove unnecessary initializer * change confused name * fix name * Move func outside loop * fix name inconsistency | 29 November 2018, 14:40:21 UTC |
| 79fe09d | Gan Quan | 29 November 2018, 07:26:39 UTC | forgot to remove conda branch meta (#190) | 29 November 2018, 07:26:39 UTC |
| a8fa85c | Gan Quan | 29 November 2018, 07:21:53 UTC | Conda builds (#187) * conda recipe * switching to source build * trying windows build * wip * windows build works | 29 November 2018, 07:21:53 UTC |
| a0d0b1e | Mufei Li | 28 November 2018, 16:13:30 UTC | [Model] Fix + batched DGMG (#175) * DGMG with batch size 1 * Fix * Adjustment * Fix * Fix * Fix * Fix * Fix has_node and __contains__ * Batched implementation for DGMG * Remove redundant dependency * Adjustment * Fix * Add comments | 28 November 2018, 16:13:30 UTC |
| 5cda368 | HQ | 27 November 2018, 16:58:03 UTC | [Model] SBM hotfix (#137) * [Model]SBM hotfix * [Model] remove backend in data | 27 November 2018, 16:58:03 UTC |
| 02eb463 | yifeim | 27 November 2018, 07:15:57 UTC | report accuracy and fix training mask (#181) | 27 November 2018, 07:15:57 UTC |
| 2c2b747 | Minjie Wang | 27 November 2018, 05:47:01 UTC | [Install] pip install (#180) * add bdist_wheel build * fix wheel build * fix setup * fix ci * fix setup * fix * fix setup * poke ci * fix * poke ci * clean build * fix ci * addback the env | 27 November 2018, 05:47:01 UTC |
| b82b8e2 | Minjie Wang | 27 November 2018, 05:37:03 UTC | [Schedule] get rid of unnecessary graph.edges() call for v2v-spmv update_all (#179) | 27 November 2018, 05:37:03 UTC |
| 524e656 | Minjie Wang | 26 November 2018, 16:12:28 UTC | [Bugfix] enable SPMV for multi-dimension node feature (#178) * Support multi-dimension node feature in SPMV * fix as requested | 26 November 2018, 16:12:28 UTC |
| b1eeb93 | Minjie Wang | 26 November 2018, 03:33:08 UTC | [Bugfix][Runtime] Zero degree behaviors (#177) * fix recv nodes are all 0deg; fix hybriddict does not through keyerror properly * fallback to apply_nodes when all nodes are 0deg; WIP on pull spmv 0deg * new 0deg behavior * new 0deg behavior * update mx utest for pull-0deg * fix mx * fix mx * get rid of unnecessary sort-n-unique | 26 November 2018, 03:33:08 UTC |
| 4dfe754 | Minjie Wang | 22 November 2018, 18:49:59 UTC | Fix num_rows bug in batched_graph (#169) | 22 November 2018, 18:49:59 UTC |
| 23e2e83 | Zihao Ye | 22 November 2018, 18:00:36 UTC | [API] change the signature of node/edge filter (#166) * change the signature of node/edge filter * upd filter | 22 November 2018, 18:00:36 UTC |
| deb653f | Lingfan Yu | 22 November 2018, 17:15:50 UTC | [Runtime] Scheduler and Executor (#140) * executor api * draft executor interface * WIP * revert changes to avoid conflict with api change * core scheduling logic * WIP: build graph adj * incidence matrix for in edges * support incidence matrix for partial recv nodes * improve * build adjmat in scheduler * graph store * get degree bucketing schedule * connect to c++ degree bucketing * conceptual executor creation code * executor comments * fix * more executor comments * WIP: full send_and_recv schedule * most schedulers * simplify scheduler * executors * runtime * builtin function base class * adj indices and shape * completely refactor scheduler * rename and move bundled out to function.py * use_edge_feature in msg func * rewrite scheduler * node edge executor * connect with graph api * handle zero degree * misc * fix test cases * fix a good many bugs... * remove old scheduler * push and pull * fix send recv * c++ lint * fix batched send recv * hot fix for mxnet * typo * write back executor * apply node edge * clean up, doc string * fix as requested * refactor * fix * WIP * WIP * ir draft * more on ir * WIP: spmv schedule * WIP * recv schedule * refactor * WIP * snr degree bucketing * snr scheduler * move prog to graph.py; rename * unittest for send/recv * remove some legacy codes * WIP: update_all * pass test_basics * passed all current utests * more utests; fix mx utest * WIP: fixing zero deg initial value * some tests * fix 0deg problem * fix mx * fix mx * some notes * fix as requested | 22 November 2018, 17:15:50 UTC |
| 3e8b63e | Mufei Li | 22 November 2018, 15:29:25 UTC | [Model] DGMG Training with Batch Size 1 (#161) * DGMG with batch size 1 * Fix * Adjustment * Fix * Fix * Fix * Fix | 22 November 2018, 15:29:25 UTC |
| bf6d002 | VoVAllen | 22 November 2018, 03:01:25 UTC | [Bugfix] fix gpu manual choice for capsule example (#164) | 22 November 2018, 03:01:24 UTC |
| 0ec1a49 | Minjie Wang | 21 November 2018, 16:50:46 UTC | [Frame] change num rows behavior (#163) * move initializer to column scheme; change num rows behavior * poke mx ci * fix mx utest in append * fix bug in add edges * utest for updating partial rows * fix bug in from_networkx and from_scipy_matrix * revert per-col initializer change * fix pickle utest | 21 November 2018, 16:50:46 UTC |
| 440aece | Da Zheng | 21 November 2018, 04:39:54 UTC | [Test] add tests for built-in functions (#159) * add spmv tests on mxnet. * test backward. * add tests for pull. * use mxnet backend. * address comment. * add comments. | 21 November 2018, 04:39:54 UTC |
| 5f89cd6 | Da Zheng | 20 November 2018, 07:57:52 UTC | Fix the convergence problem in SSE. (#162) * add a test. * move file. * debug * add degree normalization. * it can converge now. * remove hidden_data. * use readonly graph index. * use subgraph loader. * refactor code and remove intermediate data. * split inference. * mix cpu and gpu training. * fix mxnet sparse_matrix constructor. * convert tensor context. * set up the prediction model. * load mxnet csr directly. * add timing. * move test_sse.py to sse_batch.py * fix the tensor version of SSE. * update README. | 20 November 2018, 07:57:52 UTC |
| e515f53 | Gan Quan | 19 November 2018, 23:18:36 UTC | [Frame] supporting partial row on first column and individual column initializers (#160) addresses issue #156 | 19 November 2018, 23:18:36 UTC |
| cab1fdf | Minjie Wang | 17 November 2018, 06:53:53 UTC | [Doc] doc update (#158) * minor fix * jake's change | 17 November 2018, 06:53:53 UTC |
| 79a5102 | Gan Quan | 16 November 2018, 22:19:20 UTC | Pickling support (#155) * pickling support * resorting to suggested way of pickling * custom attribute pickling check * working around a weird pytorch pickling bug * including partial frame case * pickling everything now * fix as requested | 16 November 2018, 22:19:20 UTC |
| 05f464f | Gan Quan | 15 November 2018, 15:55:15 UTC | [Bugfix] fix args with incontiguous node and edge tensor (#153) | 15 November 2018, 15:55:15 UTC |
| ed1854e | Gan Quan | 15 November 2018, 14:47:20 UTC | [Bugfix] fix a potential context mismatch (#154) | 15 November 2018, 14:47:20 UTC |
| 53b9a4b | Zihao Ye | 15 November 2018, 03:29:59 UTC | [DOC][Model] Update Tree-LSTM (#152) * update tree lstm * tree_lstm (new interface) * simplify pop * merge qipeng(root) * upd tree-lstm & tutorial * upd model * new capsule tutorial * capsule for new API * fix deprecated API * New tutorial and example * investigate gc problem * add viz code * new capsule tutorial * remove ipynb * move u_hat * add link * add requirements.txt * remove ani.save * update ci to install requirements * utf-8 * change seed * graphviz requirement * accelerate * little format * update some markup | 15 November 2018, 03:29:59 UTC |
| 2389df8 | Da Zheng | 14 November 2018, 21:51:27 UTC | [API] Subgraph sampling API. (#138) * add neighbor sampler. * fix sampler. * handle non-existing nodes differently in MapParentIdToSubgraphId. * fix sampling tests. * parallelize sampling. * add more tests. * fix a bug in subgraph loader. * get number of sampled nodes directly. * load mxnet CSR to DGLGraph directly. * create graph from mxnet csr array directly. * use subgraph loader in SSE. * fix a bug in sampling. * output framework tensor. * fix. * remove unnecessary code. * fix tests. * add SSE README. * move to contrib. * address comments. * add tests. | 14 November 2018, 21:51:27 UTC |
| 048f6d7 | Minjie Wang | 14 November 2018, 03:12:38 UTC | [GraphIndex] refactor graph caching (#150) * refactor graph caching * fix mx test * fix typo | 14 November 2018, 03:12:38 UTC |
| a9ffb59 | Zihao Ye | 13 November 2018, 23:09:14 UTC | [DOC][Model] Tree-LSTM example and tutorial (#146) [DOC][Model] Tree-LSTM example and tutorial | 13 November 2018, 23:09:14 UTC |
| 0452cc3 | Gan Quan | 13 November 2018, 03:15:45 UTC | [Bug] Transpose adj is not correctly cached (#148) | 13 November 2018, 03:15:45 UTC |
| cd3e25a | Minjie Wang | 12 November 2018, 20:18:22 UTC | [CI] add graphviz (#147) | 12 November 2018, 20:18:22 UTC |
| 7cb5007 | VoVAllen | 12 November 2018, 17:43:13 UTC | [Doc][Model] New Capsule Tutorial & Example (#143) * new capsule tutorial * capsule for new API * fix deprecated API * New tutorial and example * investigate gc problem * add viz code * new capsule tutorial * remove ipynb * move u_hat * add link * add requirements.txt * remove ani.save * update ci to install requirements * add graphviz | 12 November 2018, 17:43:13 UTC |
| a95459e | Minjie Wang | 12 November 2018, 06:06:05 UTC | [CI] Improved CI (#141) * change ci * update ci * update ci * update ci * update ci * update ci * update ci * update ci * update ci * update ci * update ci * update ci * update ci * update ci * update ci * update ci * nx package * update ci * update ci * update ci * fix * mx dockerfile by zhengda * python3.6->3.5 * update ci image * add tutorial test * fix ci * fix ssl problem * minor change * small fix on traversal utest * fix syntax * add matplotlib in image * fix * update ci * update ci | 12 November 2018, 06:06:05 UTC |
| 7cbb83d | Gan Quan | 12 November 2018, 04:09:39 UTC | better bfs edge test (#142) | 12 November 2018, 04:09:39 UTC |
| d6c80e0 | Gan Quan | 11 November 2018, 22:19:55 UTC | [API] bfs with edges (#132) * bfs with edges * dfs toy test case * clean up * style fix * bugfix * updating docs for bfs_edges and readouts | 11 November 2018, 22:19:55 UTC |
| a36d084 | Gan Quan | 11 November 2018, 19:43:15 UTC | removing 3.6 f-string (#139) | 11 November 2018, 19:43:15 UTC |
| 66676a5 | Minjie Wang | 11 November 2018, 01:34:17 UTC | [Bugfix] Fix bug in bfs and topo (#135) * Fix bug in bfs and topo * remove legacy codes | 11 November 2018, 01:34:17 UTC |
| 6d96a97 | Minjie Wang | 10 November 2018, 16:59:55 UTC | [Doc] docstring for SST dataset (#133) | 10 November 2018, 16:59:55 UTC |
| 40ca5de | Gan Quan | 10 November 2018, 16:35:34 UTC | [API] Readout interfaces (#124) * fixing builtin src*edge shape mismatch * bundled function refactor (?) * fixing names * readout prototype * oops * more fixes * removing readout prototype * sum_on() with SPMV, fixing batching with 0 edges * readouts with segmented sum * typo (??????) * fixes NLTK dependency (#125) * misc fixes including #126 (pushing again) * sanity check for mxnet * fixes NLTK dependency (#125) and #126 * reverting to sum_nodes/edges | 10 November 2018, 16:35:34 UTC |
| 8ea359d | Minjie Wang | 09 November 2018, 20:04:57 UTC | [API] Message propagation APIs (#127) * add examples in traversal.py * message propagate methods * use the new message propagation for tree-lstm * update to the new name * update propagate API doc * update doc * add propagate utest | 09 November 2018, 20:04:57 UTC |
| 72efb42 | Gan Quan | 09 November 2018, 19:16:52 UTC | [Bugfix] fixes NLTK dependency (#125) and #126 (#131) | 09 November 2018, 19:16:52 UTC |
| aa56835 | Minjie Wang | 09 November 2018, 07:18:23 UTC | [Hotfix] hotfix for clang (#130) | 09 November 2018, 07:18:23 UTC |
| 7fe6d0c | Minjie Wang | 09 November 2018, 03:57:16 UTC | [Doc] Refactor API doc (#128) * refactor API doc; add markup link in tutorials * fix readme | 09 November 2018, 03:57:16 UTC |
| 3e43d7b | Minjie Wang | 09 November 2018, 03:52:22 UTC | [Test] Lower allclose precision (#129) | 09 November 2018, 03:52:22 UTC |
| bd0e4fa | Da Zheng | 08 November 2018, 18:00:47 UTC | [MXNet][API] move to the new API (#123) * move gat to the new api. * fix gcn. * update sse. * fix dgl core. * update sse. * fix small bugs in dgl core. * fix mxnet tests. * retrigger * address comments and fix more bugs. * fix * fix tests. | 08 November 2018, 18:00:47 UTC |
| 1eb17bb | Zihao Ye | 08 November 2018, 15:31:55 UTC | [Model] Adapt Tree-LSTM to new interface (#122) * tree_lstm (new interface) * simplify pop | 08 November 2018, 15:31:55 UTC |
| 2319167 | GaiYu0 | 08 November 2018, 15:14:19 UTC | [API] Graph traversal (#103) * bfs, dfs and topological traversal * dfs and test cases * Conflicts: python/dgl/graph.py src/graph/graph.cc src/graph/graph_op.cc * documentation * requested changes * Conflicts: Jenkinsfile examples/pytorch/gcn/gcn.py examples/pytorch/gcn/gcn_spmv.py python/dgl/graph.py python/dgl/graph_index.py src/graph/graph.cc src/graph/graph_op.cc * Conflicts: Jenkinsfile python/dgl/graph_index.py * fix lint errors * fix lint errors * fix lint errors * fix test cases * requested changes * traversal interface * [Bug] fixed a typo that caused syntax error (#120) * WIP * bfs nodes generator works * topological traversal * WIP: dfs_edges * dfs edges * dfs labeled edges * utest for traversal * fix lint * fix utest * code clean * changes as requested | 08 November 2018, 15:14:19 UTC |
| 79cecce | Minjie Wang | 05 November 2018, 04:02:11 UTC | [Doc] Fix missing file (#119) | 05 November 2018, 04:02:11 UTC |
| 87ed21e | Gan Quan | 05 November 2018, 03:57:05 UTC | [Doc] Basic tutorials & two model tutorials (#118) [Doc] Basic tutorials & two model tutorials | 05 November 2018, 03:57:05 UTC |
| 7241a9c | Minjie Wang | 05 November 2018, 02:42:39 UTC | [Backend] backend interface (#109) * backend interface * small fix * more comments to the data type dict * WIP * convert_to and narrow * WIP * pytorch and numpy backend; WIP on mxnet backend * mxnet backend * narrow * Fix all usages * fix for mx * fix for mx * fix mx * fix mx * fix mx * fix mx * fix mx * fix mx * fix mx * revert jenkins * add sparse_matrix api * sparse matrix api * some fixme * Fix as requested | 05 November 2018, 02:42:39 UTC |
| b420a5b | GaiYu0 | 04 November 2018, 23:14:01 UTC | [Model] Fix broken CDGNN example (#111) * pretty printer * Conflicts: python/dgl/data/sbm.py * refined line_graph implementation * fix broken api calls * small fix to trigger CI * requested change | 04 November 2018, 23:14:01 UTC |
| b355d1e | Minjie Wang | 04 November 2018, 05:22:53 UTC | [API] Apply nodes & apply edges (#117) | 04 November 2018, 05:22:53 UTC |
