https://github.com/stamatak/standard-RAxML
Revision f5d0d44fd18253211379acea4cd96857369af844 authored by stamatak on 26 February 2016, 21:21:21 UTC, committed by stamatak on 26 February 2016, 21:21:21 UTC
2. small fix in LG4X model param optimization that will hopefully solve the issues with LG4X
1 parent 640b68a
Tip revision: f5d0d44fd18253211379acea4cd96857369af844 authored by stamatak on 26 February 2016, 21:21:21 UTC
1. changed BS replicate generation option -f j to refuse generating BS replicates if original alignment contains completely undetermined columns
1. changed BS replicate generation option -f j to refuse generating BS replicates if original alignment contains completely undetermined columns
Tip revision: f5d0d44
| File | Mode | Size |
|---|---|---|
| WindowsExecutables_v8.2.0 | ||
| WindowsExecutables_v8.2.4 | ||
| WindowsExecutables_v8.2.4_Alternate | ||
| manual | ||
| usefulScripts | ||
| Makefile.AVX.HYBRID.gcc | -rw-r--r-- | 2.3 KB |
| Makefile.AVX.MPI.gcc | -rw-r--r-- | 2.2 KB |
| Makefile.AVX.PTHREADS.gcc | -rw-r--r-- | 2.9 KB |
| Makefile.AVX.PTHREADS.mac | -rw-r--r-- | 2.9 KB |
| Makefile.AVX.gcc | -rw-r--r-- | 2.8 KB |
| Makefile.AVX.mac | -rw-r--r-- | 2.9 KB |
| Makefile.AVX2.HYBRID.gcc | -rw-r--r-- | 2.3 KB |
| Makefile.AVX2.MPI.gcc | -rw-r--r-- | 2.2 KB |
| Makefile.AVX2.PTHREADS.gcc | -rw-r--r-- | 3.0 KB |
| Makefile.AVX2.PTHREADS.mac | -rw-r--r-- | 3.0 KB |
| Makefile.AVX2.gcc | -rw-r--r-- | 2.8 KB |
| Makefile.AVX2.mac | -rw-r--r-- | 2.9 KB |
| Makefile.HYBRID.gcc | -rw-r--r-- | 2.0 KB |
| Makefile.MPI.gcc | -rw-r--r-- | 1.9 KB |
| Makefile.PTHREADS.gcc | -rw-r--r-- | 2.7 KB |
| Makefile.PTHREADS.mac | -rw-r--r-- | 2.7 KB |
| Makefile.QuartetMPI.gcc | -rw-r--r-- | 2.7 KB |
| Makefile.SSE3.HYBRID.gcc | -rw-r--r-- | 2.1 KB |
| Makefile.SSE3.MPI.gcc | -rw-r--r-- | 2.0 KB |
| Makefile.SSE3.PTHREADS.gcc | -rw-r--r-- | 2.8 KB |
| Makefile.SSE3.PTHREADS.mac | -rw-r--r-- | 2.8 KB |
| Makefile.SSE3.QuartetMPI.gcc | -rw-r--r-- | 2.7 KB |
| Makefile.SSE3.gcc | -rw-r--r-- | 2.6 KB |
| Makefile.SSE3.mac | -rw-r--r-- | 2.7 KB |
| Makefile.gcc | -rw-r--r-- | 2.6 KB |
| README | -rw-r--r-- | 1.9 KB |
| Release-Notes | -rw-r--r-- | 520 bytes |
| ancestralStates.c | -rw-r--r-- | 27.1 KB |
| avxLikelihood.c | -rw-r--r-- | 105.0 KB |
| axml.c | -rw-r--r-- | 381.6 KB |
| axml.h | -rw-r--r-- | 49.7 KB |
| bipartitionList.c | -rw-r--r-- | 168.7 KB |
| classify.c | -rw-r--r-- | 71.5 KB |
| eigen.c | -rw-r--r-- | 4.7 KB |
| evaluateGenericSpecial.c | -rw-r--r-- | 108.8 KB |
| evaluatePartialGenericSpecial.c | -rw-r--r-- | 36.8 KB |
| fastDNAparsimony.c | -rw-r--r-- | 59.3 KB |
| fastSearch.c | -rw-r--r-- | 34.3 KB |
| globalVariables.h | -rw-r--r-- | 9.9 KB |
| gpl-3.0.txt | -rw-r--r-- | 34.3 KB |
| leaveDropping.c | -rw-r--r-- | 39.9 KB |
| legacyCode.c | -rw-r--r-- | 22.9 KB |
| makenewzGenericSpecial.c | -rw-r--r-- | 133.5 KB |
| mem_alloc.c | -rw-r--r-- | 3.0 KB |
| models.c | -rw-r--r-- | 192.7 KB |
| multiple.c | -rw-r--r-- | 49.6 KB |
| newviewGenericSpecial.c | -rw-r--r-- | 230.6 KB |
| optimizeModel.c | -rw-r--r-- | 100.1 KB |
| parsePartitions.c | -rw-r--r-- | 44.9 KB |
| rapidBootstrap.c | -rw-r--r-- | 9.2 KB |
| rmq.h | -rw-r--r-- | 416 bytes |
| rmqs.c | -rw-r--r-- | 12.5 KB |
| rmqs.h | -rw-r--r-- | 2.0 KB |
| rogueEPA.c | -rw-r--r-- | 10.2 KB |
| searchAlgo.c | -rw-r--r-- | 37.2 KB |
| topologies.c | -rw-r--r-- | 17.1 KB |
| treeIO.c | -rw-r--r-- | 52.5 KB |
Computing file changes ...
