f8a900e | James Hensman | 11 August 2016, 15:59:09 UTC | some tidying in rst files | 11 August 2016, 15:59:09 UTC |
5dd6fc3 | James Hensman | 11 August 2016, 15:43:08 UTC | adding notes for VGP implementation | 11 August 2016, 15:43:08 UTC |
7baf773 | James Hensman | 11 August 2016, 13:46:46 UTC | autodoccing priors, likelihoods, etc | 11 August 2016, 13:46:46 UTC |
97626fb | James Hensman | 11 August 2016, 13:06:37 UTC | more docstring improvements | 11 August 2016, 13:06:37 UTC |
f45232e | James Hensman | 11 August 2016, 12:54:20 UTC | significant improvements to autodoccing | 11 August 2016, 12:54:20 UTC |
b498690 | James Hensman | 11 August 2016, 10:32:02 UTC | autodoc works better with autosummary | 11 August 2016, 10:32:02 UTC |
6f36c1a | James Hensman | 10 August 2016, 19:26:11 UTC | tf0.8 as minimum | 10 August 2016, 19:26:11 UTC |
1ad6ed4 | James Hensman | 10 August 2016, 19:05:57 UTC | spend a long time fiddling with an equation | 10 August 2016, 19:05:57 UTC |
414cd19 | James Hensman | 10 August 2016, 17:46:52 UTC | fiddling with setup.py | 10 August 2016, 17:46:52 UTC |
4c8c939 | James Hensman | 10 August 2016, 17:33:26 UTC | chanegd manifest | 10 August 2016, 17:33:26 UTC |
26f7f24 | James Hensman | 10 August 2016, 17:26:49 UTC | first attempt at a manifest file | 10 August 2016, 17:26:49 UTC |
847802d | James Hensman | 10 August 2016, 17:19:12 UTC | forcing absolute imports | 10 August 2016, 17:19:12 UTC |
e488d6f | James Hensman | 10 August 2016, 17:08:49 UTC | fixing import error | 10 August 2016, 17:08:49 UTC |
fafac6a | James Hensman | 10 August 2016, 17:03:50 UTC | adding pandas to docs-require | 10 August 2016, 17:03:50 UTC |
88fdb65 | James Hensman | 10 August 2016, 17:01:24 UTC | adding scipt to docs_require | 10 August 2016, 17:01:24 UTC |
ed2b401 | James Hensman | 10 August 2016, 16:36:16 UTC | using python 3.4 on readthedocs | 10 August 2016, 16:36:16 UTC |
915388a | James Hensman | 10 August 2016, 16:27:45 UTC | adding tensorflow to docs_require | 10 August 2016, 16:27:45 UTC |
b4188fe | James Hensman | 10 August 2016, 16:18:29 UTC | built an intro page based on the readme | 10 August 2016, 16:18:29 UTC |
dc6c830 | James Hensman | 10 August 2016, 13:55:50 UTC | adding docs_require.txt | 10 August 2016, 13:55:50 UTC |
f8b24a1 | James Hensman | 10 August 2016, 13:37:37 UTC | Merge branch 'master' into sphinx | 10 August 2016, 13:37:37 UTC |
c50f9c9 | James Hensman | 10 August 2016, 13:37:19 UTC | improved headings | 10 August 2016, 13:37:19 UTC |
f5e5303 | James Hensman | 10 August 2016, 13:33:46 UTC | Merge branch 'master' into sphinx | 10 August 2016, 13:33:46 UTC |
b3dab02 | James Hensman | 10 August 2016, 13:07:00 UTC | use batch ops in KLs and conditionals (#159) * adding a simple Uniform prior * fixed sign bug * removed python loops from KL code * removed python loop from conditionals * removing loops from conditionals.py * removed loops form vgp * removing dead code | 10 August 2016, 13:07:00 UTC |
3cc5604 | James Hensman | 10 August 2016, 09:59:44 UTC | adding coregion kernel (#139) * adding coregion kernel * tests for Coregino kernel * slight iprovements to Coregion docstring | 10 August 2016, 09:59:44 UTC |
57a6c69 | James Hensman | 10 August 2016, 09:38:35 UTC | adding a simple Uniform prior (#146) * adding a simple Uniform prior * fixed sign bug | 10 August 2016, 09:38:35 UTC |
5726dd4 | Mark van der Wilk | 09 August 2016, 18:39:33 UTC | Fix covariance overparameterisation (#150) GPflow often optimizes positive-definite matrices. To maintain positive-definiteness without constrained optimization, a lower-triangular matrix is optimized. Sigma + L L ^T The previous approach to optimizing L was to ignore the upper half. The mean that there were some extra variables in the optimization vector, which did nothing. This PR implements a tensorflow op which transforms back-and-forth between triangular matrix L and a 'packed' vector representation. The result is that there are no redundant parameters in the optimization vector. | 09 August 2016, 18:39:33 UTC |
9c2faf6 | James Hensman | 09 August 2016, 09:41:58 UTC | add Apache headers (fix #135) (#157) | 09 August 2016, 09:41:58 UTC |
87dad9f | Mark van der Wilk | 09 August 2016, 09:21:08 UTC | Fixed optimiser options to be consistent with scipy (#153) * Fixed optimiser options to be consistent with scipy. * Bumped version & added deprecation warnings. | 09 August 2016, 09:21:08 UTC |
3f6f063 | Mark van der Wilk | 02 August 2016, 11:06:21 UTC | Get tests working with Python 3. (#152) - Added relative imports (.reference) - Changed all failIf/Unless to the non-deprecated assertTrue/False. | 02 August 2016, 11:06:21 UTC |
2d98580 | Mark van der Wilk | 01 August 2016, 16:53:36 UTC | Merge pull request #151 from GPflow/active_dims_pickle_bug make kernels with active_dims pickleable | 01 August 2016, 16:53:36 UTC |
a509447 | James Hensman | 31 July 2016, 19:17:53 UTC | adding some notes on structure (unfinished) | 31 July 2016, 19:17:53 UTC |
1da8382 | James Hensman | 29 July 2016, 19:38:40 UTC | Merge branch 'master' into active_dims_pickle_bug | 29 July 2016, 19:38:40 UTC |
bd0b423 | James Hensman | 29 July 2016, 19:27:15 UTC | make kernels with active_dims pickleable | 29 July 2016, 19:27:15 UTC |
18ec355 | James Hensman | 29 July 2016, 14:55:19 UTC | Merge branch 'master' into sphinx | 29 July 2016, 14:55:19 UTC |
e155d76 | James Hensman | 29 July 2016, 09:25:43 UTC | Track logprobs (#136) * added code for returning log-densities from HMC * added test code for log-prob tracking * adding access to logprobs from model class | 29 July 2016, 09:25:43 UTC |
6fa46bb | James Hensman | 28 July 2016, 16:30:51 UTC | enables pickling with fixed parameters (#141) | 28 July 2016, 16:30:51 UTC |
e0719ed | James Hensman | 28 July 2016, 16:12:19 UTC | some small edits to keep GPflow working with python 3 (#137) * python3.5 compat in test_likelihoods * py35 compatibility in autoflow | 28 July 2016, 16:12:19 UTC |
b4a8d1b | James Hensman | 27 July 2016, 14:40:51 UTC | made transforms all pickleable (#134) | 27 July 2016, 14:40:51 UTC |
47cdb8f | James Hensman | 27 July 2016, 11:34:20 UTC | latex related edits | 27 July 2016, 11:34:20 UTC |
ce59679 | James Hensman | 26 July 2016, 20:00:29 UTC | work on mcmc notebook | 26 July 2016, 20:00:29 UTC |
3438b29 | James Hensman | 26 July 2016, 16:49:37 UTC | minor kernels edits | 26 July 2016, 16:49:37 UTC |
9342d0c | James Hensman | 26 July 2016, 16:39:23 UTC | adding kernels intro notebook | 26 July 2016, 16:39:23 UTC |
e921bdd | James Hensman | 26 July 2016, 11:10:57 UTC | includgin classification notebook | 26 July 2016, 11:10:57 UTC |
bd9bbc6 | James Hensman | 26 July 2016, 11:07:12 UTC | more skeletoning of the docs | 26 July 2016, 11:07:12 UTC |
d06a29b | James Hensman | 26 July 2016, 09:18:45 UTC | adding empty kernels notebook | 26 July 2016, 09:18:45 UTC |
6ef136a | James Hensman | 26 July 2016, 07:50:37 UTC | modified banana notebook | 26 July 2016, 07:50:37 UTC |
9577e38 | James Hensman | 25 July 2016, 21:49:53 UTC | enabled syntax highlighting, following this bug: https://github.com/spatialaudio/nbsphinx/issues/24 | 25 July 2016, 21:49:53 UTC |
521dbcd | James Hensman | 25 July 2016, 14:58:12 UTC | improvements to regression notebook | 25 July 2016, 14:58:12 UTC |
359150e | James Hensman | 25 July 2016, 14:24:23 UTC | most of the things to buuld the docs | 25 July 2016, 14:24:23 UTC |
9497d34 | James Hensman | 24 July 2016, 12:05:57 UTC | A dummy commit to trigger codecov.io | 24 July 2016, 12:05:57 UTC |
ddd0c3f | Alexander G. de G. Matthews | 13 July 2016, 08:04:12 UTC | Merge pull request #130 from GPflow/autokill_autoflow Autokill autoflow | 13 July 2016, 08:04:12 UTC |
985946b | James Hensman | 12 July 2016, 21:52:16 UTC | extending test to cover simplified autoflow killing | 12 July 2016, 21:52:16 UTC |
486775c | James Hensman | 12 July 2016, 21:45:01 UTC | some simplification of kill_autoflow | 12 July 2016, 21:45:01 UTC |
874957c | Alexander G. de G. Matthews | 11 July 2016, 11:01:08 UTC | Merge pull request #89 from GPflow/get_param_index a simple function to work out where a parameter is on the free_state | 11 July 2016, 11:01:08 UTC |
ce66d24 | Alexander G. de G. Matthews | 11 July 2016, 10:39:30 UTC | Merge branch 'master' into get_param_index | 11 July 2016, 10:39:30 UTC |
28fb48a | Alexander G. de G. Matthews | 11 July 2016, 10:38:58 UTC | Merge pull request #128 from GPflow/jitter_for_samples adding slight jitter to cholesky when computing samples | 11 July 2016, 10:38:58 UTC |
896ed83 | James Hensman | 11 July 2016, 08:36:00 UTC | Merge branch 'master' into get_param_index | 11 July 2016, 08:36:00 UTC |
31b48a1 | Alexander G. de G. Matthews | 11 July 2016, 08:27:39 UTC | Merge branch 'master' into jitter_for_samples | 11 July 2016, 08:27:39 UTC |
02286ca | Alexander G. de G. Matthews | 11 July 2016, 08:27:20 UTC | Merge pull request #127 from GPflow/softplus using the built-in softplus function for simplicity | 11 July 2016, 08:27:20 UTC |
30c2190 | James Hensman | 10 July 2016, 20:37:01 UTC | adding slight jitter to cholesky when computing samples | 10 July 2016, 20:37:01 UTC |
7172bd3 | James Hensman | 10 July 2016, 07:01:58 UTC | using the built-in softplu function for simplicity | 10 July 2016, 07:01:58 UTC |
691b20b | James Hensman | 09 July 2016, 13:25:40 UTC | minor edits to tests | 09 July 2016, 13:25:40 UTC |
3235b0d | James Hensman | 09 July 2016, 11:59:18 UTC | changes to regression ipynb | 09 July 2016, 11:59:18 UTC |
5ae3f60 | James Hensman | 09 July 2016, 11:57:35 UTC | minor edits in param.py - get_sample_dict became get_samples_df (since it retuns a datafram - set_parameter_dict no longer 'pops', resulting in an empty dict | 09 July 2016, 11:57:35 UTC |
1388d9f | James Hensman | 09 July 2016, 11:31:29 UTC | Merge branch 'master' into get_param_index | 09 July 2016, 11:31:29 UTC |
dc5ac86 | James Hensman | 09 July 2016, 10:54:46 UTC | Correction to VGP from @fujiisoup (#126) Correction to VGP from @fujiisoup. See also #125 | 09 July 2016, 10:54:46 UTC |
e0b2217 | Mark van der Wilk | 09 July 2016, 09:09:55 UTC | Merge pull request #123 from GPflow/lognormal Lognormal | 09 July 2016, 09:09:55 UTC |
73488dc | Mark van der Wilk | 09 July 2016, 08:59:24 UTC | Merge branch 'master' into lognormal | 09 July 2016, 08:59:24 UTC |
9d005bc | James Hensman | 08 July 2016, 15:18:59 UTC | Merge pull request #122 from GPflow/svi-example Extended svi_test.ipynb to show how to use the stochastic optimizer | 08 July 2016, 15:18:59 UTC |
f959f29 | James Hensman | 08 July 2016, 12:00:29 UTC | improvements to svi notebook | 08 July 2016, 12:00:29 UTC |
3722e10 | James Hensman | 08 July 2016, 11:28:26 UTC | correction to lognormal test | 08 July 2016, 11:28:26 UTC |
4f21e67 | James Hensman | 08 July 2016, 11:27:14 UTC | adding a lognormal prior | 08 July 2016, 11:27:14 UTC |
5faf578 | Mark van der Wilk | 08 July 2016, 10:54:18 UTC | Extended svi_test.ipynb to show how to use the stochastic optimizer. | 08 July 2016, 10:54:18 UTC |
b331313 | Mark van der Wilk | 08 July 2016, 10:02:43 UTC | Merge branch 'master' of github.com:GPflow/GPflow into get_param_index | 08 July 2016, 10:02:43 UTC |
62972a2 | Mark van der Wilk | 07 July 2016, 11:49:10 UTC | Fixed tests and small bug. | 07 July 2016, 11:49:10 UTC |
57876ab | Alexander G. de G. Matthews | 07 July 2016, 06:52:26 UTC | Merge pull request #120 from GPflow/lower_bound_transforms improvements to transforms | 07 July 2016, 06:52:26 UTC |
3f71351 | James Hensman | 06 July 2016, 17:33:24 UTC | improvements to transforms | 06 July 2016, 17:33:24 UTC |
dea3e94 | Mark van der Wilk | 06 July 2016, 12:55:46 UTC | get_samples_dict now returns a pandas DataFrame object. | 06 July 2016, 12:55:46 UTC |
6253621 | Mark van der Wilk | 06 July 2016, 11:11:16 UTC | Merge branch 'master' of github.com:GPflow/GPflow into get_param_index | 06 July 2016, 11:11:16 UTC |
de38ef7 | Alexander G. de G. Matthews | 01 July 2016, 12:31:40 UTC | Merge pull request #108 from GPflow/Placeholder Placeholder | 01 July 2016, 12:31:40 UTC |
ab157e8 | James Hensman | 30 June 2016, 09:27:22 UTC | testing samples_dict with fixed param | 30 June 2016, 09:27:22 UTC |
e8d7432 | James Hensman | 30 June 2016, 09:24:52 UTC | a simple test for get_samples_dict | 30 June 2016, 09:24:52 UTC |
45bcb9c | James Hensman | 30 June 2016, 09:13:42 UTC | improvements to the regression notebook | 30 June 2016, 09:13:42 UTC |
8a58c57 | James Hensman | 30 June 2016, 08:53:56 UTC | a new function to make an array of samples into a dictionary of the same form as get_param_dict | 30 June 2016, 08:53:56 UTC |
5be1aa6 | James Hensman | 30 June 2016, 08:31:26 UTC | improved docstring | 30 June 2016, 08:31:26 UTC |
6a0dc6e | James Hensman | 30 June 2016, 08:27:26 UTC | trivial merge | 30 June 2016, 08:27:26 UTC |
deaab00 | James Hensman | 29 June 2016, 19:53:31 UTC | some improvements to update_data notebook | 29 June 2016, 19:53:31 UTC |
e425bbc | James Hensman | 29 June 2016, 19:20:47 UTC | removing more notebooks | 29 June 2016, 19:20:47 UTC |
d2c16d9 | James Hensman | 29 June 2016, 19:15:38 UTC | removing ipynb_checkpoints | 29 June 2016, 19:15:38 UTC |
ca32ff2 | James Hensman | 29 June 2016, 17:06:04 UTC | small improvements to test_param | 29 June 2016, 17:06:04 UTC |
e8b04bc | James Hensman | 29 June 2016, 16:11:29 UTC | trivial merge | 29 June 2016, 16:11:29 UTC |
804435b | Alexander G. de G. Matthews | 29 June 2016, 15:24:25 UTC | Merge pull request #112 from GPflow/to_dict `to_dict` | 29 June 2016, 15:24:25 UTC |
86a4ac5 | James Hensman | 29 June 2016, 14:12:23 UTC | Merge branch 'master' into to_dict | 29 June 2016, 14:12:23 UTC |
70ca464 | James Hensman | 29 June 2016, 14:11:40 UTC | Merge pull request #114 from GPflow/PabloLeon-readmeTypos Update README.md. Thanks @PabloLeon | 29 June 2016, 14:11:40 UTC |
8a32f66 | PabloLeon | 29 June 2016, 13:55:34 UTC | Update README.md | 29 June 2016, 13:55:34 UTC |
1a5fba1 | James Hensman | 29 June 2016, 13:50:05 UTC | improving tests for models that should recompile | 29 June 2016, 13:50:05 UTC |
c140477 | James Hensman | 29 June 2016, 13:45:31 UTC | correcting no-cover statement | 29 June 2016, 13:45:31 UTC |
4505df2 | James Hensman | 29 June 2016, 13:28:33 UTC | removing exectuable bit for test_data_object | 29 June 2016, 13:28:33 UTC |
c050115 | James Hensman | 29 June 2016, 12:51:49 UTC | removing debug statements | 29 June 2016, 12:51:49 UTC |
0e1aa36 | James Hensman | 29 June 2016, 12:08:16 UTC | removing remnanat of calc_feed_dict | 29 June 2016, 12:48:27 UTC |