f955bf4 | Denis Yuen | 10 January 2023, 23:20:04 UTC | hoverfly upgrade and powermock removal (#5302) * hoverfly upgrade and powermock removal * Update for bom release | 10 January 2023, 23:20:04 UTC |
9e599dd | Steve Von Worley | 10 January 2023, 22:35:49 UTC | update test for junit 5 | 10 January 2023, 22:35:49 UTC |
a558de0 | Steve Von Worley | 10 January 2023, 21:43:49 UTC | parse CWL language version https://ucsc-cgl.atlassian.net/browse/DOCK-2293 #5267 | 10 January 2023, 21:43:49 UTC |
af43825 | Denis Yuen | 10 January 2023, 19:53:32 UTC | Update Dockerfile (#5303) | 10 January 2023, 19:53:32 UTC |
84c62e2 | Denis Yuen | 09 January 2023, 15:38:05 UTC | convert dockstore-common, webservice, most integration tests to junit 5 (#5297) * convert dockstore-common to junit 5 * convert dockstore-webservice * migration for parts of integration tests * hook up tags on everything and try agai | 09 January 2023, 15:38:05 UTC |
3365556 | Kathy Tran | 09 January 2023, 15:30:51 UTC | Add language version to search (#5295) https://ucsc-cgl.atlassian.net/browse/SEAB-5052 | 09 January 2023, 15:30:51 UTC |
4a08953 | Denis Yuen | 06 January 2023, 18:08:35 UTC | rotate bundle (#5298) | 06 January 2023, 18:08:35 UTC |
591e861 | Steve Von Worley | 04 January 2023, 19:13:55 UTC | generate validation for missing nextflow main script https://ucsc-cgl.atlassian.net/browse/DOCK-2004 #4599 | 04 January 2023, 19:13:55 UTC |
7bb9cf8 | Denis Yuen | 04 January 2023, 18:31:58 UTC | junit 5 with compatibility (legacy) layer (#5292) * auto-migration pain * junit tags seems like worse than categories * more category, not sure why this doesn't happen locally * sonarcloud seems to really care about this for junit5 | 04 January 2023, 18:31:58 UTC |
72a4487 | Steve Von Worley | 28 December 2022, 01:06:25 UTC | improve handling of WDL with recursive remote import https://ucsc-cgl.atlassian.net/browse/DOCK-2299 #5274 | 28 December 2022, 01:06:25 UTC |
6ddbb0e | Denis Yuen | 21 December 2022, 19:15:26 UTC | catch runtime exceptions (#5288) * catch runtime * build issue with non-deterministic unit tests | 21 December 2022, 19:15:26 UTC |
f23c343 | Denis Yuen | 21 December 2022, 17:59:20 UTC | code coverage improvement (#5286) * curious * optimize test with our own repos * try different setting based on https://stackoverflow.com/questions/23190107/cannot-use-jacoco-jvm-args-and-surefire-jvm-args-together-in-maven | 21 December 2022, 17:59:20 UTC |
69e32cb | Charles Overbeck | 21 December 2022, 00:30:12 UTC | Update pull request template (#5289) https://ucsc-cgl.atlassian.net/browse/SEAB-5077 | 21 December 2022, 00:30:12 UTC |
fa76e2a | Denis Yuen | 16 December 2022, 16:30:50 UTC | Feature/language versions plugins and java 17 (#5279) * probably time for java 17 only * add file version metadata to plugin interface * need newer machine image for Java 17 | 16 December 2022, 16:30:50 UTC |
32170aa | Denis Yuen | 16 December 2022, 15:36:48 UTC | set install and deploy at end to avoid partial deploy (#5282) * set install and deploy at end to avoid partial deploy * oops * This worked locally ... again | 16 December 2022, 15:36:48 UTC |
fb248e6 | dependabot[bot] | 16 December 2022, 15:28:16 UTC | Bump postgresql from 42.4.1 to 42.4.3 in /bom-internal (#5251) * Bump postgresql from 42.4.1 to 42.4.3 in /bom-internal Bumps [postgresql](https://github.com/pgjdbc/pgjdbc) from 42.4.1 to 42.4.3. - [Release notes](https://github.com/pgjdbc/pgjdbc/releases) - [Changelog](https://github.com/pgjdbc/pgjdbc/blob/master/CHANGELOG.md) - [Commits](https://github.com/pgjdbc/pgjdbc/compare/REL42.4.1...REL42.4.3) --- updated-dependencies: - dependency-name: org.postgresql:postgresql dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * license files Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 16 December 2022, 15:28:16 UTC |
847bb76 | David Steinberg | 15 December 2022, 19:51:23 UTC | Remove unused bom entry (#5278) | 15 December 2022, 19:51:23 UTC |
14b0629 | dependabot[bot] | 14 December 2022, 21:34:10 UTC | Bump commons-net from 3.3 to 3.9.0 in /bom-internal (#5265) Bumps commons-net from 3.3 to 3.9.0. --- updated-dependencies: - dependency-name: commons-net:commons-net dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 14 December 2022, 21:34:10 UTC |
447e351 | Nayeon Hyun | 14 December 2022, 19:52:56 UTC | SEAB-3978: check for null GitHub user input (#5277) * Started creating tests to check 500 errors * redirected 500 error for null input * Delete GarbageInputsIT.java * fixed codecy issue * change from pr review * checkstyle error fix * added test for invalid json * checkstyle fix * checkstyle fix * removed debug statement | 14 December 2022, 19:52:56 UTC |
63b2b21 | Denis Yuen | 14 December 2022, 19:50:25 UTC | fix trs 2.0.1 issues, hook up language version (#5275) * fix new issues with SEAB-4857 and #5260 * compile and test this * fix for wildcard content type | 14 December 2022, 19:50:25 UTC |
623a5cd | Steve Von Worley | 14 December 2022, 01:34:19 UTC | replace cwljava with cwlavro https://ucsc-cgl.atlassian.net/browse/DOCK-2281 #5245 | 14 December 2022, 01:34:19 UTC |
f98c64f | Denis Yuen | 12 December 2022, 19:54:35 UTC | Feature/user permissions cleanup (#5271) * censor emails in usernames * Fix test and add comment * spread out fix * lock down fluctuating Java version | 12 December 2022, 19:54:35 UTC |
e96c79d | Kathy Tran | 10 December 2022, 01:15:59 UTC | Add workflow language version for SourceFile and Version & implement it for WDL (#5266) https://github.com/dockstore/dockstore/issues/4320 https://ucsc-cgl.atlassian.net/browse/DOCK-1838 * Track workflow language string for SourceFile and a list of workflow language strings for Version * Parse and set language version for WDL files | 10 December 2022, 01:15:59 UTC |
5278de2 | Nayeon Hyun | 08 December 2022, 17:11:27 UTC | DOCK-2237: Reimplemented ignored integration test (#5264) * reimplemented ignored integration test * checkstyle error fix * pr review changes * pr review changes | 08 December 2022, 17:11:27 UTC |
86ba4b8 | Denis Yuen | 01 December 2022, 19:55:24 UTC | parallel circleci unit tests (#5259) * benchmark parallel unit tests * hook up test split infrastructure * hmmm, unit tests lack a workspace * run non-confidential tests in parallel as well | 01 December 2022, 19:55:24 UTC |
aa64a3a | Kathy Tran | 30 November 2022, 20:38:06 UTC | Allow organization admins to view pending and rejected invitations (#5243) https://github.com/dockstore/dockstore/issues/4226 https://ucsc-cgl.atlassian.net/browse/DOCK-1781 * Create a 'status' property that records the invitation status, including reject invites * Remove the accepted field in the OrganizationUser class. Note that the accepted DB column is kept! * Create DB triggers that keep the accepted and status columns in sync * Only return all organization members if the user is an org admin * Fix permissions so only accepted admins/maintainers can perform actions * Create a constant for common migrations | 30 November 2022, 20:38:06 UTC |
cb19917 | Nayeon Hyun | 30 November 2022, 18:23:37 UTC | DOCK-2228 Added apptools in RSS feed (#5241) * Started implemented apptools for RSS feed. * fixed whitespace typo * fixed bbuild error * build stylecheck error * Added tests * Code style fixes * Code style fixes * RSS fix * added RSSfeed and sitemap test * added RSSfeed and sitemap test * pr review changes * removed unneeded apptool if case | 30 November 2022, 18:23:37 UTC |
cefa5db | Denis Yuen | 29 November 2022, 15:19:00 UTC | TRS 2.0.1 (#5246) * redirect to openapi3, point at branch, and compile * hook up zip format and test it * pr feedback | 29 November 2022, 15:19:00 UTC |
61861c1 | Denis Yuen | 22 November 2022, 15:12:38 UTC | lgtm migration (#5244) * Create codeql.yml | 22 November 2022, 15:12:38 UTC |
eca1fba | Denis Yuen | 21 November 2022, 15:14:14 UTC | Feature/python deps (#5242) * only support two cli versions as with rest of Dockstore * update test * hook up swagger version into a requirements file | 21 November 2022, 15:14:14 UTC |
90b99bf | Denis Yuen | 16 November 2022, 21:20:17 UTC | add reviewers [skip ci] (#5240) | 16 November 2022, 21:20:17 UTC |
cd1146a | Denis Yuen | 16 November 2022, 20:55:05 UTC | Feature/reduce ci pin (#5239) * only pin github action major * restore validation version, not provided by github | 16 November 2022, 20:55:05 UTC |
05d01ca | Charles Overbeck | 15 November 2022, 23:02:08 UTC | Tidy up SAM sharing code (#5137) https://ucsc-cgl.atlassian.net/browse/SEAB-4848 Don't usually throw for SAM authz/authn errors | 15 November 2022, 23:02:08 UTC |
d066954 | Denis Yuen | 14 November 2022, 21:18:42 UTC | Reset version | 14 November 2022, 21:18:42 UTC |
cb25d3c | Denis Yuen | 14 November 2022, 21:16:26 UTC | Update artifacts | 14 November 2022, 21:16:26 UTC |
ce7cb2c | Steve Von Worley | 14 November 2022, 20:11:42 UTC | improve id parsing algorithms in getContent https://ucsc-cgl.atlassian.net/browse/DOCK-2170 #4906 | 14 November 2022, 20:11:42 UTC |
ba888a6 | Steve Von Worley | 14 November 2022, 18:11:46 UTC | improve .dockstore.yml validation https://ucsc-cgl.atlassian.net/browse/DOCK-2194 #4985 | 14 November 2022, 18:11:46 UTC |
67f4547 | Kathy Tran | 08 November 2022, 15:33:36 UTC | Remove code for refreshing GitHub tokens (#5230) https://ucsc-cgl.atlassian.net/browse/SEAB-4818 | 08 November 2022, 15:33:36 UTC |
4a45533 | Denis Yuen | 04 November 2022, 14:11:04 UTC | Remove 5 "the the" instances (#5225) Co-authored-by: aofarrel <aofarrel@ucsc.edu> | 04 November 2022, 14:11:04 UTC |
4db3e99 | Charles Overbeck | 02 November 2022, 16:41:28 UTC | Correctly discover existing workflows (#5199) Also remove incorrectly discovered workflows. https://ucsc-cgl.atlassian.net/browse/SEAB-4674 | 02 November 2022, 16:41:28 UTC |
11ac500 | Denis Yuen | 27 October 2022, 20:18:05 UTC | Merge tag '1.13.1' into develop hotfix release | 27 October 2022, 20:18:05 UTC |
56bc180 | Denis Yuen | 27 October 2022, 20:10:39 UTC | Iterate versions | 27 October 2022, 20:10:39 UTC |
7fcab72 | Kathy Tran | 27 October 2022, 14:53:05 UTC | Create metadata health check endpoint (#5198) https://ucsc-cgl.atlassian.net/browse/SEAB-4900 | 27 October 2022, 14:53:05 UTC |
c8e969e | Charles Overbeck | 26 October 2022, 21:57:10 UTC | Add review instructions (#5196) https://ucsc-cgl.atlassian.net/browse/SEAB-4067 Build failed, but merging anyway given nature of change. | 26 October 2022, 21:57:10 UTC |
1c3ecfc | Charles Overbeck | 26 October 2022, 00:00:34 UTC | Always index only one version's source files (#5168) #5154 | 26 October 2022, 00:00:34 UTC |
f7086d9 | Denis Yuen | 25 October 2022, 21:24:52 UTC | Feature/even more dropwizard (#5206) * Update dropwizard to 2.1.3 (#5167) https://ucsc-cgl.atlassian.net/browse/SEAB-4867 * dropwizard update 2.1.4 * Update swagger annotations * THIRD-PARTY-LICENSES.txt from local build on Mac Co-authored-by: Kathy Tran <kathylevtran@gmail.com> Co-authored-by: Charles Overbeck <coverbec@ucsc.edu> | 25 October 2022, 21:24:52 UTC |
9774c5d | dependabot[bot] | 25 October 2022, 20:36:06 UTC | Bump actions/cache from 3.0.8 to 3.0.11 (#5177) Bumps [actions/cache](https://github.com/actions/cache) from 3.0.8 to 3.0.11. - [Release notes](https://github.com/actions/cache/releases) - [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md) - [Commits](https://github.com/actions/cache/compare/v3.0.8...v3.0.11) --- updated-dependencies: - dependency-name: actions/cache dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 25 October 2022, 20:36:06 UTC |
67b2d17 | Steve Von Worley | 25 October 2022, 19:51:50 UTC | include galaxy plugin in webservice docker image https://ucsc-cgl.atlassian.net/browse/SEAB-4880 | 25 October 2022, 19:51:50 UTC |
71e5ff9 | Kathy Tran | 25 October 2022, 17:22:37 UTC | Iterate CircleCI cache (#5209) https://ucsc-cgl.atlassian.net/browse/SEAB-4766 | 25 October 2022, 17:22:37 UTC |
33a7b90 | Kathy Tran | 24 October 2022, 14:02:51 UTC | Update Kohsuke GitHub library (#5176) https://ucsc-cgl.atlassian.net/browse/SEAB-4766 * Update GitHub kohsuke library to 1.313 * Use 30 seconds for cache max-age | 24 October 2022, 14:02:51 UTC |
d6838f9 | Steve Von Worley | 18 October 2022, 02:39:41 UTC | ORCID identifiers can end with 'X' https://ucsc-cgl.atlassian.net/browse/DOCK-2256 #5152 | 18 October 2022, 02:39:41 UTC |
69655e0 | Kathy Tran | 17 October 2022, 17:57:38 UTC | Update dropwizard to 2.1.3 (#5167) https://ucsc-cgl.atlassian.net/browse/SEAB-4867 | 17 October 2022, 17:57:38 UTC |
0e5e071 | Steve Von Worley | 10 October 2022, 23:30:17 UTC | update circleci setup_remote_docker docker version https://ucsc-cgl.atlassian.net/browse/SEAB-4903 | 10 October 2022, 23:30:17 UTC |
ac40a7e | Steve Von Worley | 10 October 2022, 20:10:20 UTC | update circleci setup_remote_docker docker version https://ucsc-cgl.atlassian.net/browse/SEAB-4903 | 10 October 2022, 20:10:20 UTC |
c5f3510 | David Steinberg | 07 October 2022, 16:49:34 UTC | Add basic file integrity verification (#5148) * Add basic file integrity verification Sends log messages daily to the csp-security lambda * Temporarily add docker push * Changed compose_setup, reverted entrypoint * Revert docker push * Rearrange comment * Add back in docker push * Omit more directories * Remove omissions * Omit more directories * Fix error in config * Remove docker push | 07 October 2022, 16:49:34 UTC |
7c4c08b | Steve Von Worley | 07 October 2022, 16:06:58 UTC | fix staging discuss entry backlinks https://ucsc-cgl.atlassian.net/browse/SEAB-4042 | 07 October 2022, 16:06:58 UTC |
ac357d1 | Steve Von Worley | 07 October 2022, 16:04:01 UTC | optimize integration test database migrations https://ucsc-cgl.atlassian.net/browse/SEAB-4499 | 07 October 2022, 16:04:01 UTC |
69fd259 | Kathy Tran | 05 October 2022, 16:14:33 UTC | Update cromwell and WDL bindings (#5153) https://ucsc-cgl.atlassian.net/browse/SEAB-4850 | 05 October 2022, 16:14:33 UTC |
273cd85 | dependabot[bot] | 28 September 2022, 13:43:03 UTC | Bump char0n/swagger-editor-validate from 1.3.1 to 1.3.2 (#5147) Bumps [char0n/swagger-editor-validate](https://github.com/char0n/swagger-editor-validate) from 1.3.1 to 1.3.2. - [Release notes](https://github.com/char0n/swagger-editor-validate/releases) - [Commits](https://github.com/char0n/swagger-editor-validate/compare/v1.3.1...v1.3.2) --- updated-dependencies: - dependency-name: char0n/swagger-editor-validate dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 28 September 2022, 13:43:03 UTC |
cff1cb1 | Steve Von Worley | 26 September 2022, 19:30:01 UTC | replace cwlavro by cwljava https://ucsc-cgl.atlassian.net/browse/DOCK-2170 #4906 | 26 September 2022, 19:30:01 UTC |
3a7a538 | Denis Yuen | 19 September 2022, 15:38:57 UTC | Update PR template [skip ci] (#5134) | 19 September 2022, 15:38:57 UTC |
9de3f43 | Denis Yuen | 14 September 2022, 21:55:49 UTC | :xMerge tag '1.13.0' into develop Release 1.13.0 | 14 September 2022, 21:55:49 UTC |
e3618a5 | Denis Yuen | 14 September 2022, 21:53:42 UTC | Merge branch 'release/1.13.0' | 14 September 2022, 21:53:42 UTC |
be6ca39 | Charles Overbeck | 09 September 2022, 18:17:04 UTC | 1.13 generated artifacts | 09 September 2022, 18:17:04 UTC |
c4f86a7 | Steve Von Worley | 09 September 2022, 15:33:58 UTC | fix SAM access to hosted workflows https://ucsc-cgl.atlassian.net/browse/SEAB-4849 | 09 September 2022, 15:33:58 UTC |
3c3f5c1 | Denis Yuen | 08 September 2022, 14:07:17 UTC | update regression test requirements (#5126) | 08 September 2022, 14:07:17 UTC |
c2f90a9 | Denis Yuen | 07 September 2022, 18:20:53 UTC | reset versions | 07 September 2022, 18:20:53 UTC |
eb8d632 | Denis Yuen | 07 September 2022, 18:18:39 UTC | tagging release | 07 September 2022, 18:18:39 UTC |
301d57c | Kathy Tran | 07 September 2022, 15:10:38 UTC | Fix failing workflow snapshot (#5120) https://ucsc-cgl.atlassian.net/browse/SEAB-4832 * Handle images in galaxy workflows * Null check CWL workflow outputs | 07 September 2022, 15:10:38 UTC |
43c3a05 | Steve Von Worley | 06 September 2022, 23:23:04 UTC | fix sourcefile + sam permissions + google token bug https://ucsc-cgl.atlassian.net/browse/SEAB-4837 | 06 September 2022, 23:23:04 UTC |
3186c66 | Denis Yuen | 02 September 2022, 16:40:20 UTC | ensure token refresh before checking repo validity (#5114) | 02 September 2022, 16:45:05 UTC |
e1de82d | Denis Yuen | 02 September 2022, 16:40:20 UTC | ensure token refresh before checking repo validity (#5114) | 02 September 2022, 16:40:20 UTC |
ec6a84e | Denis Yuen | 31 August 2022, 20:31:17 UTC | reset versions | 31 August 2022, 20:31:17 UTC |
b0c2ea0 | Denis Yuen | 31 August 2022, 20:28:47 UTC | release for ui testing | 31 August 2022, 20:28:47 UTC |
ec5b72a | Denis Yuen | 31 August 2022, 20:24:35 UTC | iterate versions for 1.14 | 31 August 2022, 20:24:35 UTC |
d70b474 | Denis Yuen | 31 August 2022, 20:20:34 UTC | Merge tag '1.12.3' into develop 1.12.3 | 31 August 2022, 20:20:34 UTC |
5c7c4c6 | Denis Yuen | 31 August 2022, 20:06:47 UTC | Merge branch 'hotfix/1.12.3' | 31 August 2022, 20:06:47 UTC |
a178667 | Steve Von Worley | 31 August 2022, 20:04:59 UTC | throw a nicer exception when parent path in conversion method is relative https://ucsc-cgl.atlassian.net/browse/DOCK-2058 #4715 | 31 August 2022, 20:04:59 UTC |
a115571 | Kathy Tran | 31 August 2022, 20:00:49 UTC | Add connection pool health check (#5112) https://ucsc-cgl.atlassian.net/browse/SEAB-4508 | 31 August 2022, 20:00:49 UTC |
b878a35 | Denis Yuen | 30 August 2022, 14:38:01 UTC | Automatically regenerate github tokens in old style on start-up (#5102) * new encrypted bundle with updated github token format * add automatic token reset for new github token format * PR feedback | 30 August 2022, 14:38:01 UTC |
995c2c8 | Kathy Tran | 29 August 2022, 12:39:03 UTC | Sync GitHub app entry metadata with default version (#5101) https://github.com/dockstore/dockstore/issues/4729 https://ucsc-cgl.atlassian.net/browse/DOCK-2065 | 29 August 2022, 12:39:03 UTC |
2bc1866 | Denis Yuen | 26 August 2022, 15:47:31 UTC | check whether a manual tool repo is valid (#5096) * check whether a manual tool repo is valid | 26 August 2022, 15:47:31 UTC |
19e0ec8 | Kathy Tran | 26 August 2022, 12:48:29 UTC | Fix multi-arch Quay images (#5093) https://ucsc-cgl.atlassian.net/browse/SEAB-3928 * Create an image for each multi arch manifest for a quay tag * Reuse methods from QuayImageRegistry for workflow images | 26 August 2022, 12:48:29 UTC |
4aae4e2 | Steve Von Worley | 25 August 2022, 22:17:28 UTC | harmonize EntryVersionHelper "sourcefiles" methods https://ucsc-cgl.atlassian.net/browse/SEAB-4625 | 25 August 2022, 22:17:28 UTC |
ffc9d00 | Steve Von Worley | 25 August 2022, 22:15:10 UTC | better .dockstore.yml error message on missing author name+orcid https://ucsc-cgl.atlassian.net/browse/DOCK-2166 #4893 | 25 August 2022, 22:15:10 UTC |
3dfcb13 | Steve Von Worley | 25 August 2022, 16:19:02 UTC | handle push of conflicting descriptor languages gracefully https://ucsc-cgl.atlassian.net/browse/DOCK-2167 #4894 | 25 August 2022, 16:19:02 UTC |
1b9b860 | Denis Yuen | 25 August 2022, 14:36:00 UTC | add git permissions check for workflows (#5094) * add check for workflows * Update WorkflowResource.java * may as well add test | 25 August 2022, 14:36:00 UTC |
de73f0a | Denis Yuen | 24 August 2022, 21:35:15 UTC | Feature/debug GitHub action (#5098) * are both java versions having issues? * looks like issue with unpinned java version | 24 August 2022, 21:35:15 UTC |
4bde527 | dependabot[bot] | 23 August 2022, 15:08:30 UTC | Bump actions/cache from 3.0.7 to 3.0.8 (#5095) Bumps [actions/cache](https://github.com/actions/cache) from 3.0.7 to 3.0.8. - [Release notes](https://github.com/actions/cache/releases) - [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md) - [Commits](https://github.com/actions/cache/compare/v3.0.7...v3.0.8) --- updated-dependencies: - dependency-name: actions/cache dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> | 23 August 2022, 15:08:30 UTC |
a271ce7 | Denis Yuen | 23 August 2022, 14:09:27 UTC | once more unto (#5092) | 23 August 2022, 14:09:27 UTC |
852f21b | Kathy Tran | 19 August 2022, 20:49:45 UTC | Index Elasticsearch if mappings don't exist (#5081) https://ucsc-cgl.atlassian.net/browse/SEAB-4598 | 19 August 2022, 20:49:45 UTC |
7a7b6bf | Charles Overbeck | 19 August 2022, 19:56:06 UTC | Missed new param in merge (#5090) | 19 August 2022, 19:56:06 UTC |
7ad9e6d | Charles Overbeck | 19 August 2022, 17:38:46 UTC | Improved Github app handling for logs (#5070) https://ucsc-cgl.atlassian.net/browse/SEAB-4304 #4845 | 19 August 2022, 17:38:46 UTC |
ff101f7 | Steve Von Worley | 19 August 2022, 17:00:19 UTC | tighten some authorization checks https://ucsc-cgl.atlassian.net/browse/SEAB-4403 | 19 August 2022, 17:00:19 UTC |
aabfe70 | Denis Yuen | 18 August 2022, 20:58:53 UTC | turn on pgp signature checks (#5087) * how is it now? * expand list | 18 August 2022, 20:58:53 UTC |
6647331 | Denis Yuen | 18 August 2022, 18:20:46 UTC | Feature/fix for paths maybe (#5083) * been here for a while, curious what tests break * this should not reverse | 18 August 2022, 18:20:46 UTC |
c8ab72a | Charles Overbeck | 18 August 2022, 16:09:04 UTC | Add a type query parameter to fetch user entries. (#5084) Noticed that the endpoint wasn't returning app tools, fixed that also. https://ucsc-cgl.atlassian.net/browse/SEAB-4699 | 18 August 2022, 16:09:04 UTC |
dbbe1ff | dependabot[bot] | 16 August 2022, 21:15:55 UTC | Bump postgresql from 42.3.3 to 42.4.1 in /bom-internal (#5064) * Bump postgresql from 42.3.3 to 42.4.1 in /bom-internal Bumps [postgresql](https://github.com/pgjdbc/pgjdbc) from 42.3.3 to 42.4.1. - [Release notes](https://github.com/pgjdbc/pgjdbc/releases) - [Changelog](https://github.com/pgjdbc/pgjdbc/blob/master/CHANGELOG.md) - [Commits](https://github.com/pgjdbc/pgjdbc/compare/REL42.3.3...REL42.4.1) --- updated-dependencies: - dependency-name: org.postgresql:postgresql dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> * update generated Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Denis Yuen <denis.yuen@oicr.on.ca> | 16 August 2022, 21:15:55 UTC |
55c5598 | Denis Yuen | 15 August 2022, 14:47:11 UTC | Revert "thrilling (#5079)" (#5080) This reverts commit 8106ab39b9c63eafa7e9db6feca8f6e78dd2b710. | 15 August 2022, 14:47:11 UTC |
672bf09 | Denis Yuen | 15 August 2022, 14:38:10 UTC | allow topic update on hosted (#5071) * allow topic update on hosted * fix bedmas type bug * why we link strings to tests * sonarcloud happiness | 15 August 2022, 14:38:10 UTC |