Revision fc90b8ca7d43f10fd9acee4985b89446c87d1801 authored by Kathy Tran on 12 January 2024, 01:41:05 UTC, committed by Kathy Tran on 12 January 2024, 01:41:05 UTC
1 parent 0c6564c
pom.xml
<?xml version="1.0" encoding="UTF-8"?>
<!--
~ Copyright 2017 OICR
~
~ Licensed under the Apache License, Version 2.0 (the "License");
~ you may not use this file except in compliance with the License.
~ You may obtain a copy of the License at
~
~ http://www.apache.org/licenses/LICENSE-2.0
~
~ Unless required by applicable law or agreed to in writing, software
~ distributed under the License is distributed on an "AS IS" BASIS,
~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
~ See the License for the specific language governing permissions and
~ limitations under the License.
-->
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>io.dockstore</groupId>
<artifactId>dockstore</artifactId>
<version>${revision}${changelist}</version>
<relativePath>../pom.xml</relativePath>
</parent>
<artifactId>dockstore-common</artifactId>
<packaging>jar</packaging>
<dependencies>
<dependency>
<groupId>io.swagger.core.v3</groupId>
<artifactId>swagger-annotations-jakarta</artifactId>
</dependency>
<dependency>
<groupId>org.pf4j</groupId>
<artifactId>pf4j</artifactId>
</dependency>
<dependency>
<groupId>jakarta.annotation</groupId>
<artifactId>jakarta.annotation-api</artifactId>
</dependency>
<dependency>
<groupId>jakarta.ws.rs</groupId>
<artifactId>jakarta.ws.rs-api</artifactId>
</dependency>
<dependency>
<groupId>com.github.zafarkhaja</groupId>
<artifactId>java-semver</artifactId>
</dependency>
<dependency>
<groupId>org.postgresql</groupId>
<artifactId>postgresql</artifactId>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>org.yaml</groupId>
<artifactId>snakeyaml</artifactId>
</dependency>
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<type>jar</type>
</dependency>
<dependency>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter-api</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>io.dropwizard</groupId>
<artifactId>dropwizard-testing</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-configuration2</artifactId>
</dependency>
<dependency>
<groupId>com.google.code.gson</groupId>
<artifactId>gson</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-exec</artifactId>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-text</artifactId>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
</dependency>
<dependency>
<groupId>jakarta.validation</groupId>
<artifactId>jakarta.validation-api</artifactId>
</dependency>
<dependency>
<groupId>commons-beanutils</groupId>
<artifactId>commons-beanutils</artifactId>
</dependency>
<dependency>
<groupId>org.javamoney.moneta</groupId>
<artifactId>moneta-core</artifactId>
</dependency>
<dependency>
<groupId>javax.money</groupId>
<artifactId>money-api</artifactId>
</dependency>
<!-- broad - cromwell stuff -->
<dependency>
<groupId>org.broadinstitute</groupId>
<artifactId>wdl-draft3_2.13</artifactId>
<exclusions>
<exclusion>
<groupId>org.typelevel</groupId>
<artifactId>cats-effect_2.13</artifactId>
</exclusion>
<exclusion>
<groupId>org.typelevel</groupId>
<artifactId>cats-core_2.13</artifactId>
</exclusion>
<exclusion>
<groupId>org.typelevel</groupId>
<artifactId>alleycats-core_2.13</artifactId>
</exclusion>
<exclusion>
<groupId>eu.timepit</groupId>
<artifactId>refined_2.13</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.broadinstitute</groupId>
<artifactId>wdl-draft2_2.13</artifactId>
<exclusions>
<exclusion>
<groupId>org.typelevel</groupId>
<artifactId>cats-effect_2.13</artifactId>
</exclusion>
<exclusion>
<groupId>org.typelevel</groupId>
<artifactId>cats-core_2.13</artifactId>
</exclusion>
<exclusion>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
</exclusion>
<exclusion>
<groupId>org.typelevel</groupId>
<artifactId>alleycats-core_2.13</artifactId>
</exclusion>
<exclusion>
<groupId>eu.timepit</groupId>
<artifactId>refined_2.13</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.commons</groupId>
<artifactId>commons-text</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.broadinstitute</groupId>
<artifactId>wdl-biscayne_2.13</artifactId>
<exclusions>
<exclusion>
<groupId>org.typelevel</groupId>
<artifactId>cats-effect_2.13</artifactId>
</exclusion>
<exclusion>
<groupId>org.typelevel</groupId>
<artifactId>cats-core_2.13</artifactId>
</exclusion>
<exclusion>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
</exclusion>
<exclusion>
<groupId>org.typelevel</groupId>
<artifactId>alleycats-core_2.13</artifactId>
</exclusion>
<exclusion>
<groupId>eu.timepit</groupId>
<artifactId>refined_2.13</artifactId>
</exclusion>
<exclusion>
<groupId>org.apache.commons</groupId>
<artifactId>commons-text</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.broadinstitute</groupId>
<artifactId>language-factory-core_2.13</artifactId>
<exclusions>
<exclusion>
<groupId>org.typelevel</groupId>
<artifactId>cats-effect_2.13</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>com.typesafe</groupId>
<artifactId>config</artifactId>
</dependency>
<dependency>
<groupId>org.broadinstitute</groupId>
<artifactId>cromwell-core_2.13</artifactId>
<exclusions>
<exclusion>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
</exclusion>
<exclusion>
<groupId>com.readytalk</groupId>
<artifactId>metrics-statsd-common</artifactId>
</exclusion>
<exclusion>
<groupId>eu.timepit</groupId>
<artifactId>refined_2.13</artifactId>
</exclusion>
<exclusion>
<groupId>io.circe</groupId>
<artifactId>circe-core_2.13</artifactId>
</exclusion>
<exclusion>
<groupId>org.typelevel</groupId>
<artifactId>cats-core_2.13</artifactId>
</exclusion>
<exclusion>
<groupId>org.typelevel</groupId>
<artifactId>alleycats-core_2.13</artifactId>
</exclusion>
<exclusion>
<groupId>org.typelevel</groupId>
<artifactId>jawn-parser_2.13</artifactId>
</exclusion>
<!-- probably don't need GCP stuff -->
<exclusion>
<groupId>com.google.cloud</groupId>
<artifactId>google-cloud-resourcemanager</artifactId>
</exclusion>
<exclusion>
<groupId>com.google.cloud</groupId>
<artifactId>google-cloud-monitoring</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.broadinstitute</groupId>
<artifactId>cromwell-wom_2.13</artifactId>
</dependency>
<dependency>
<groupId>org.broadinstitute</groupId>
<artifactId>cromwell-common_2.13</artifactId>
</dependency>
<dependency>
<groupId>org.broadinstitute</groupId>
<artifactId>cromwell-wdl-transforms-new-base_2.13</artifactId>
</dependency>
<dependency>
<groupId>org.broadinstitute</groupId>
<artifactId>cromwell-wdl-transforms-draft3_2.13</artifactId>
</dependency>
<dependency>
<groupId>org.broadinstitute</groupId>
<artifactId>cromwell-wdl-model-draft3_2.13</artifactId>
</dependency>
<dependency>
<groupId>org.broadinstitute</groupId>
<artifactId>cromwell-wdl-model-draft2_2.13</artifactId>
</dependency>
<dependency>
<groupId>com.chuusai</groupId>
<artifactId>shapeless_2.13</artifactId>
</dependency>
<dependency>
<groupId>org.typelevel</groupId>
<artifactId>cats-core_2.13</artifactId>
</dependency>
<dependency>
<groupId>io.spray</groupId>
<artifactId>spray-json_2.13</artifactId>
</dependency>
<dependency>
<groupId>org.scala-lang</groupId>
<artifactId>scala-library</artifactId>
</dependency>
<dependency>
<groupId>software.amazon.awssdk</groupId>
<artifactId>s3</artifactId>
</dependency>
<dependency>
<groupId>software.amazon.awssdk</groupId>
<artifactId>s3-transfer-manager</artifactId>
</dependency>
<dependency>
<groupId>software.amazon.awssdk.crt</groupId>
<artifactId>aws-crt</artifactId>
<version>0.29.6</version>
</dependency>
<dependency>
<groupId>software.amazon.awssdk</groupId>
<artifactId>regions</artifactId>
</dependency>
<dependency>
<groupId>software.amazon.awssdk</groupId>
<artifactId>auth</artifactId>
</dependency>
<dependency>
<groupId>software.amazon.awssdk</groupId>
<artifactId>sdk-core</artifactId>
</dependency>
<dependency>
<groupId>software.amazon.awssdk</groupId>
<artifactId>aws-core</artifactId>
</dependency>
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-inline</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>uk.org.webcompere</groupId>
<artifactId>system-stubs-core</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>uk.org.webcompere</groupId>
<artifactId>system-stubs-jupiter</artifactId>
<scope>test</scope>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>net.alchim31.maven</groupId>
<artifactId>scala-maven-plugin</artifactId>
<executions>
<execution>
<goals>
<goal>compile</goal>
<goal>testCompile</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-failsafe-plugin</artifactId>
<configuration>
<skipTests>${skipITs}</skipTests>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-checkstyle-plugin</artifactId>
<configuration>
<enableFilesSummary>true</enableFilesSummary>
<enableRulesSummary>true</enableRulesSummary>
</configuration>
<executions>
<execution>
<phase>
compile
</phase>
<goals>
<goal>check</goal>
</goals>
<configuration>
<failsOnError>false</failsOnError>
<consoleOutput>true</consoleOutput>
<excludes>**/cwl/**</excludes>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<artifactId>maven-dependency-plugin</artifactId>
<executions>
<execution>
<id>analyze</id>
<goals>
<goal>analyze-only</goal>
</goals>
<configuration>
<failOnWarning>true</failOnWarning>
<outputXML>true</outputXML>
<ignoreNonCompile>true</ignoreNonCompile>
<usedDependencies>
<usedDependency>jakarta.annotation:jakarta.annotation-api</usedDependency>
<usedDependency>org.javamoney.moneta:moneta-core</usedDependency>
<usedDependency>software.amazon.awssdk.crt:aws-crt</usedDependency>
</usedDependencies>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<executions>
<execution>
<id>test-jar</id>
<goals>
<goal>test-jar</goal>
</goals>
</execution>
</executions>
<configuration>
</configuration>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>build-helper-maven-plugin</artifactId>
<executions>
<execution>
<id>add_sources</id>
<phase>generate-sources</phase>
<goals>
<goal>add-source</goal>
</goals>
<configuration>
<sources>
<source>${basedir}/target/generated-sources/swagger/src/gen/java</source>
<source>${basedir}/src/main/java</source>
</sources>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<artifactId>maven-resources-plugin</artifactId>
<executions>
<execution>
<id>template-code</id>
<phase>generate-sources</phase>
<goals>
<goal>copy-resources</goal>
</goals>
<configuration>
<outputDirectory>${basedir}/target/generated-sources/swagger/src/gen/java/io/dockstore/common</outputDirectory>
<resources>
<resource>
<directory>${project.basedir}/src/main/templates/io/dockstore/common</directory>
<includes>
<include>GeneratedConstants.java</include>
<include>package-info.java</include>
</includes>
<filtering>true</filtering>
</resource>
</resources>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>flatten-maven-plugin</artifactId>
</plugin>
</plugins>
</build>
</project>
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