https://github.com/maartenpaul/DBD_tracking
Revision fe1884d1a8f83faa68c789c30a839b3874986713 authored by Maarten Paul on 24 November 2022, 07:54:07 UTC, committed by GitHub on 24 November 2022, 07:54:07 UTC
fix hard coded variable for track length
1 parent 36f032f
Tip revision: fe1884d1a8f83faa68c789c30a839b3874986713 authored by Maarten Paul on 24 November 2022, 07:54:07 UTC
Update MSD_fit.R
Update MSD_fit.R
Tip revision: fe1884d
Load_Rdata.py
# Set pixelsize [um] and time step [s] corresponding to acquisition parameters
pixSize = 0.100
t = 0.032
##########################################################################################################################
# Feature extraction (in principle, parameters never need to be changed)
addFeat = ['meanMSD', 'xy']
maxOrder = 2
shift = 2
nClasses = 2
min1state = 1
d = getDist(x, y)
featVec = getFeatVec(d, x, y, addFeat, maxOrder, shift)
print('Data loaded and features extracted')
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