fe732e4 | deren | 03 March 2016, 16:26:39 UTC | "Updating ipyrad/__init__.py to version - 0.1.71 | 03 March 2016, 16:26:39 UTC |
b39f38b | deren | 03 March 2016, 16:25:52 UTC | svd bootstrap beginnings. Fix to step6 local storage | 03 March 2016, 16:25:52 UTC |
585a498 | deren | 02 March 2016, 22:33:46 UTC | docs update | 02 March 2016, 22:33:46 UTC |
7deefd9 | isaacovercast | 02 March 2016, 22:08:32 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 02 March 2016, 22:08:32 UTC |
e4a0a11 | isaacovercast | 02 March 2016, 22:07:40 UTC | Actually fixed 2.5 | 02 March 2016, 22:07:40 UTC |
ce0dfe1 | iovercast | 02 March 2016, 21:55:23 UTC | "Updating ipyrad/__init__.py to version - 0.1.70 | 02 March 2016, 21:55:23 UTC |
6a5679d | iovercast | 02 March 2016, 21:54:25 UTC | "Updating ipyrad/__init__.py to version - 0.1.68 | 02 March 2016, 21:54:25 UTC |
a355f17 | isaacovercast | 02 March 2016, 21:50:54 UTC | "fixed" the effort i made to set samples to 2.5 if cluster_within gets interrupted | 02 March 2016, 21:50:54 UTC |
4a8d309 | isaacovercast | 02 March 2016, 21:26:21 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 02 March 2016, 21:26:21 UTC |
0036839 | isaacovercast | 02 March 2016, 21:25:37 UTC | Change max_fragment_length for 'gbs' to *2, since weird overlaps can make gbs frags very long | 02 March 2016, 21:25:37 UTC |
1f982db | Fishlab | 02 March 2016, 19:56:07 UTC | "Updating ipyrad/__init__.py to version - 0.1.67 | 02 March 2016, 19:56:07 UTC |
85fbef3 | Fishlab | 02 March 2016, 19:55:36 UTC | fix to edge trimming step7 | 02 March 2016, 19:55:36 UTC |
d3710b5 | isaacovercast | 02 March 2016, 19:47:06 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 02 March 2016, 19:47:06 UTC |
36bd32f | deren | 02 March 2016, 18:35:20 UTC | doc edits | 02 March 2016, 18:35:20 UTC |
0281d6b | deren | 02 March 2016, 18:31:49 UTC | doc edits | 02 March 2016, 18:31:49 UTC |
c1b91af | deren | 02 March 2016, 18:27:13 UTC | doc edits | 02 March 2016, 18:27:13 UTC |
b1dc1fd | deren | 02 March 2016, 17:53:18 UTC | docs updates | 02 March 2016, 17:53:18 UTC |
64d0bc6 | deren | 02 March 2016, 17:45:12 UTC | docs updates | 02 March 2016, 17:45:12 UTC |
f4fe46a | deren | 02 March 2016, 17:38:43 UTC | docs updates | 02 March 2016, 17:38:43 UTC |
1f715fb | deren | 02 March 2016, 17:34:13 UTC | docs updates | 02 March 2016, 17:34:13 UTC |
1a5f3ec | isaacovercast | 02 March 2016, 16:40:34 UTC | fixed orientation of read mapping. | 02 March 2016, 16:40:34 UTC |
dffdaf6 | deren | 02 March 2016, 16:27:16 UTC | docs updates | 02 March 2016, 16:27:16 UTC |
f09162a | deren | 02 March 2016, 16:23:44 UTC | docs updates | 02 March 2016, 16:23:44 UTC |
0d5f4f8 | deren | 02 March 2016, 16:17:12 UTC | docs updates | 02 March 2016, 16:17:12 UTC |
224d411 | deren | 02 March 2016, 16:14:53 UTC | docs updates | 02 March 2016, 16:14:53 UTC |
dfd9d5d | deren | 02 March 2016, 15:54:05 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 02 March 2016, 15:54:05 UTC |
b61c1ae | deren | 02 March 2016, 15:53:53 UTC | docs updates | 02 March 2016, 15:53:53 UTC |
2bb7fe8 | isaacovercast | 02 March 2016, 15:00:16 UTC | Samples are set to state 2.5 at the end of clustall() so progress is recorded incrementally, makes restarting step3 smarter. | 02 March 2016, 15:00:16 UTC |
16d39a7 | deren | 02 March 2016, 14:34:54 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 02 March 2016, 14:34:54 UTC |
d7e23ea | deren | 02 March 2016, 14:34:48 UTC | svd updates. Prettier printing | 02 March 2016, 14:34:48 UTC |
77ddbe0 | Fishlab | 02 March 2016, 00:01:48 UTC | "Updating ipyrad/__init__.py to version - 0.1.66 | 02 March 2016, 00:01:48 UTC |
558342a | Fishlab | 02 March 2016, 00:01:29 UTC | gitignore update | 02 March 2016, 00:01:29 UTC |
989a5d3 | Fishlab | 02 March 2016, 00:00:24 UTC | fix to debugger in /tmp. and print to main if step1 is link_fastqs | 02 March 2016, 00:00:24 UTC |
cd903ef | isaacovercast | 27 February 2016, 03:06:36 UTC | "Updating ipyrad/__init__.py to version - 0.1.65 | 27 February 2016, 03:06:36 UTC |
478d319 | isaacovercast | 25 February 2016, 05:54:00 UTC | "Updating ipyrad/__init__.py to version - 0.1.64 | 25 February 2016, 05:54:00 UTC |
dfac14d | Isaac | 25 February 2016, 05:53:13 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 25 February 2016, 05:53:13 UTC |
724dae0 | Isaac | 25 February 2016, 05:52:07 UTC | Handle nasty gbs chunks where consensus sequence is all N's | 25 February 2016, 05:52:07 UTC |
25d2f1d | isaacovercast | 25 February 2016, 03:22:48 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 25 February 2016, 03:22:48 UTC |
a5afccd | isaacovercast | 25 February 2016, 03:22:29 UTC | versioner.py now pushes a new package to conda | 25 February 2016, 03:22:29 UTC |
f57527e | deren | 23 February 2016, 23:09:49 UTC | "Updating ipyrad/__init__.py to version - 0.1.63 | 23 February 2016, 23:09:49 UTC |
fda5112 | deren | 23 February 2016, 23:09:38 UTC | edits line 3 can only be '+', no other junk. little docs update | 23 February 2016, 23:09:38 UTC |
27a02d4 | deren | 23 February 2016, 21:30:38 UTC | docs edit | 23 February 2016, 21:30:38 UTC |
19281ae | deren | 23 February 2016, 21:23:21 UTC | simdata reset | 23 February 2016, 21:23:21 UTC |
9abbf34 | deren | 23 February 2016, 21:16:35 UTC | docs edit | 23 February 2016, 21:16:35 UTC |
a129473 | deren | 23 February 2016, 20:26:04 UTC | "Updating ipyrad/__init__.py to version - 0.1.62 | 23 February 2016, 20:26:04 UTC |
2f723ef | deren | 23 February 2016, 20:25:30 UTC | ip fix for parallel. missing 6 in run! | 23 February 2016, 20:25:30 UTC |
e151d02 | deren | 23 February 2016, 20:24:04 UTC | docs push | 23 February 2016, 20:24:04 UTC |
f971404 | deren | 23 February 2016, 20:17:32 UTC | docs push | 23 February 2016, 20:17:32 UTC |
9887268 | deren | 23 February 2016, 18:32:09 UTC | docs push | 23 February 2016, 18:32:09 UTC |
242750b | deren | 23 February 2016, 18:27:07 UTC | docs push | 23 February 2016, 18:27:07 UTC |
794b53a | deren | 23 February 2016, 18:26:34 UTC | docs push | 23 February 2016, 18:26:34 UTC |
5d8e120 | deren | 23 February 2016, 18:24:22 UTC | docs push | 23 February 2016, 18:24:22 UTC |
7fba647 | deren | 23 February 2016, 18:23:16 UTC | docs push | 23 February 2016, 18:23:16 UTC |
670a960 | deren | 23 February 2016, 18:19:06 UTC | docs push | 23 February 2016, 18:19:06 UTC |
cf37c76 | deren | 23 February 2016, 18:18:33 UTC | docs push | 23 February 2016, 18:18:33 UTC |
06af240 | deren | 23 February 2016, 18:14:21 UTC | docs push | 23 February 2016, 18:14:21 UTC |
b23478c | deren | 23 February 2016, 08:07:14 UTC | "Updating ipyrad/__init__.py to version - 0.1.61 | 23 February 2016, 08:07:14 UTC |
7d2d95f | deren | 23 February 2016, 08:06:58 UTC | improvements to filters and output s7 paired data | 23 February 2016, 08:06:58 UTC |
6b1ca08 | deren | 23 February 2016, 08:06:06 UTC | fix for when no permissions to use /tmp for logger | 23 February 2016, 08:06:06 UTC |
825df6f | deren | 23 February 2016, 04:51:37 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 23 February 2016, 04:51:37 UTC |
1e7da8f | deren | 23 February 2016, 04:51:34 UTC | fix to ./project_dir in parsing params | 23 February 2016, 04:51:34 UTC |
32a4ee5 | Isaac | 23 February 2016, 04:18:39 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 23 February 2016, 04:18:39 UTC |
f25db90 | Isaac | 23 February 2016, 04:18:00 UTC | simplified expander() | 23 February 2016, 04:18:00 UTC |
09b63ba | Isaac | 23 February 2016, 04:16:52 UTC | Moved debug info so it acutally logs before raising. | 23 February 2016, 04:16:52 UTC |
a1b4fcc | deren | 23 February 2016, 03:01:03 UTC | "Updating ipyrad/__init__.py to version - 0.1.60 | 23 February 2016, 03:01:03 UTC |
2c1febe | deren | 23 February 2016, 03:00:56 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 23 February 2016, 03:00:56 UTC |
3eb4446 | deren | 23 February 2016, 03:00:52 UTC | working svd4tet git add -A | 23 February 2016, 03:00:52 UTC |
865dc2d | deren | 23 February 2016, 03:00:24 UTC | allows ~ in load path | 23 February 2016, 03:00:24 UTC |
1842222 | deren | 23 February 2016, 03:00:02 UTC | reduced memory load on writing large chunks in step6 | 23 February 2016, 03:00:02 UTC |
a05fa00 | isaacovercast | 22 February 2016, 22:19:05 UTC | "Updating ipyrad/__init__.py to version - 0.1.59 | 22 February 2016, 22:19:05 UTC |
f7d78f3 | isaacovercast | 22 February 2016, 22:16:52 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 22 February 2016, 22:16:52 UTC |
cc64582 | isaacovercast | 22 February 2016, 22:15:56 UTC | Calculate max_fragment_length from the data, inside sample_cleanup. Only adds a couple cycles since this function is already spinning through the data to count coverage. | 22 February 2016, 22:15:56 UTC |
fbd7bd5 | deren | 22 February 2016, 21:24:25 UTC | "Updating ipyrad/__init__.py to version - 0.1.58 | 22 February 2016, 21:24:25 UTC |
dd40115 | deren | 22 February 2016, 21:24:21 UTC | hotfix for converting old assembly format to new | 22 February 2016, 21:24:21 UTC |
93e364c | deren | 22 February 2016, 21:10:01 UTC | "Updating ipyrad/__init__.py to version - 0.1.57 | 22 February 2016, 21:10:01 UTC |
b3be26c | deren | 22 February 2016, 21:09:56 UTC | loglevel fix? | 22 February 2016, 21:09:56 UTC |
6f646c3 | deren | 22 February 2016, 18:12:07 UTC | merging | 22 February 2016, 18:12:07 UTC |
7cf87a9 | deren | 22 February 2016, 18:10:28 UTC | cosmetic changes | 22 February 2016, 18:10:28 UTC |
f75f154 | deren | 22 February 2016, 07:09:30 UTC | "Updating ipyrad/__init__.py to version - 0.1.56 | 22 February 2016, 07:09:30 UTC |
a18ffdc | deren | 22 February 2016, 07:03:43 UTC | merged reindexing fix | 22 February 2016, 07:03:43 UTC |
4be3591 | deren | 22 February 2016, 07:01:41 UTC | split stats into stats_dfs and stats_files | 22 February 2016, 07:01:41 UTC |
356d24d | deren | 22 February 2016, 07:01:20 UTC | added phy, snp, str outputs | 22 February 2016, 07:01:20 UTC |
a4230a1 | deren | 22 February 2016, 07:00:42 UTC | bug fix to indel filter, better chunking | 22 February 2016, 07:00:42 UTC |
fed0628 | deren | 22 February 2016, 07:00:02 UTC | removed load_assembly, prettier printing, and print stats_files on -r flag | 22 February 2016, 07:00:02 UTC |
f59d472 | isaacovercast | 22 February 2016, 00:42:59 UTC | Clean up CLI tutorial | 22 February 2016, 00:42:59 UTC |
0de0999 | isaacovercast | 21 February 2016, 00:20:42 UTC | Fixed ordering of data.statfiles.s* to reflect order of stats in samples.py | 21 February 2016, 00:20:42 UTC |
ce0f221 | isaacovercast | 20 February 2016, 23:59:25 UTC | Improved error message | 20 February 2016, 23:59:25 UTC |
5d4a8a9 | isaacovercast | 20 February 2016, 23:58:40 UTC | Improving usability of main(), and removed reference to old .assembly format | 20 February 2016, 23:58:40 UTC |
4ba12b9 | isaacovercast | 20 February 2016, 23:07:03 UTC | Reordered sample stats | 20 February 2016, 23:07:03 UTC |
883824a | isaacovercast | 20 February 2016, 22:36:19 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 20 February 2016, 22:36:19 UTC |
7e6f003 | isaacovercast | 20 February 2016, 22:35:38 UTC | Implemented __repr__() or ObjDict so it returns sorted results | 20 February 2016, 22:35:38 UTC |
da85d5f | deren | 20 February 2016, 22:23:58 UTC | "Updating ipyrad/__init__.py to version - 0.1.55 | 20 February 2016, 22:23:58 UTC |
645cb49 | deren | 20 February 2016, 22:23:47 UTC | s7 fixed assertion error on edge trimming | 20 February 2016, 22:23:47 UTC |
3b8116f | deren | 20 February 2016, 21:48:44 UTC | "Updating ipyrad/__init__.py to version - 0.1.54 | 20 February 2016, 21:48:44 UTC |
2e710a4 | deren | 20 February 2016, 21:48:31 UTC | merge fix | 20 February 2016, 21:48:31 UTC |
1bf1332 | deren | 20 February 2016, 21:45:50 UTC | some cleanup on preview mode. Step6 pass for paired data. | 20 February 2016, 21:45:50 UTC |
4f8fb35 | isaacovercast | 20 February 2016, 21:09:38 UTC | Bug in testing for force on step 1 | 20 February 2016, 21:09:38 UTC |
206dd03 | isaacovercast | 20 February 2016, 18:39:50 UTC | "Updating ipyrad/__init__.py to version - 0.1.53 | 20 February 2016, 18:39:50 UTC |
069502b | isaacovercast | 20 February 2016, 18:39:13 UTC | Address name change request of #104 | 20 February 2016, 18:39:13 UTC |
8f4ba64 | deren | 20 February 2016, 04:36:27 UTC | Merge branch 'master' of https://github.com/dereneaton/ipyrad | 20 February 2016, 04:36:27 UTC |