Revision fe9c3824eb3d9649de2d0c074c8896ae13c45f27 authored by Nitesh Turaga on 27 April 2020, 19:14:57 UTC, committed by Nitesh Turaga on 27 April 2020, 19:14:57 UTC
1 parent 59fd34f
testgseaPlot.R
context("GSEA plot")
library(jsonlite)
library(Biobase)
test_that("gseaPlot works", {
load(file = system.file("testdata/GSE27112-GPL6103.rda", package="phantasus"))
set.seed(42)
fData(es)$t <- rnorm(nrow(es))
f <- fromJSON(gseaPlot(es, rankBy = "t", selectedGenes = sample.int(nrow(es), 10),
width=6, height=4))
expect_true(file.exists(f))
f <- fromJSON(gseaPlot(es, rankBy = "t", selectedGenes = sample.int(nrow(es), 10),
width=6, height=4, vertical = TRUE))
expect_true(file.exists(f))
f <- fromJSON(gseaPlot(es, rankBy = "t", selectedGenes = sample.int(nrow(es), 10),
width=6, height=4, vertical = TRUE,
addHeatmap = TRUE, showAnnotation = "time"))
expect_true(file.exists(f))
f <- fromJSON(gseaPlot(es, rankBy = "t", selectedGenes = sample.int(nrow(es), 10),
width=6, height=4, vertical = FALSE,
addHeatmap = TRUE, showAnnotation = "time"))
expect_true(file.exists(f))
f <- fromJSON(gseaPlot(es, rankBy = "t", selectedGenes = sample.int(nrow(es), 10),
width=6, height=4, vertical = FALSE,
addHeatmap = TRUE))
expect_true(file.exists(f))
})
test_that("gseaPlot with heatmap works for single column", {
load(file = system.file("testdata/GSE27112-GPL6103.rda", package="phantasus"))
es <- es[, 1]
set.seed(42)
fData(es)$t <- rnorm(nrow(es))
f <- fromJSON(gseaPlot(es, rankBy = "t", selectedGenes = sample.int(nrow(es), 10),
width=6, height=4, addHeatmap = TRUE))
expect_true(file.exists(f))
})
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