@Article{Giorgino:2009,
  author        = {Toni Giorgino},
  title         = {Computing and Visualizing Dynamic Time Warping Alignments in \proglang{R}: The \pkg{dtw} Package},
  journal       = {Journal of Statistical Software},
  year          = {2009},
  volume        = {31},
  number        = {7},
  pages		= {1--24},
  url           = {http://www.jstatsoft.org/v31/i07/}
}


@ARTICLE{Hermans:2007:Bioinformatics:17237107,
  crossref = {Hermans2007}
}

@ARTICLE{Aach:2001:Bioinformatics:11395426,
  author = {Aach, J and Church, G M},
  title = {Aligning Gene Expression Time Series with Time Warping Algorithms},
  journal = {Bioinformatics},
  year = {2001},
  volume = {17},
  pages = {495-508},
  number = {6},
}

@ARTICLE{Faundez-Zanuy2007,
  author = {Faundez-Zanuy, Marcos},
  title = {On-Line Signature Recognition Based on {VQ-DTW}},
  journal = {Pattern Recognition},
  year = {2007},
  volume = {40},
  pages = {981--992},
  number = {3},
}

@Manual{DtwCran,
  author = {Toni Giorgino and Paolo Tormene},
  title = {\pkg{dtw}: Dynamic Time Warping Algorithms},
  year = {2009},
  note = {\proglang{R}~package version~1.13-1},
  url = {http://CRAN.R-project.org/package=dtw}
}

@Manual{proxy,
  title 	= {\pkg{proxy}: Distance and Similarity Measures},
  author 	= {David Meyer and Christian Buchta},
  year 		= {2009},
  note 		= {\proglang{R}~package version~0.4-3},
  url           = {http://CRAN.R-project.org/package=proxy}
}

@ARTICLE{Goldberger2000,
  author = {A. L. Goldberger and L. A. Amaral and L. Glass and J. M. Hausdorff
	and P. C. Ivanov and R. G. Mark and J. E. Mietus and G. B. Moody
	and C. K. Peng and H. E. Stanley},
  title = {PhysioBank, PhysioToolkit, and PhysioNet: Components of a new Research
	Resource for Complex Physiologic Signals},
  journal = {Circulation},
  year = {2000},
  volume = {101},
  pages = {E215--E220},
  number = {23},
}

@ARTICLE{Gollmer1996,
  author = {Gollmer, K. and Posten, C.},
  title = {Supervision of Bioprocesses Using a Dynamic Time Warping Algorithm},
  journal = {Control Engineering Practice},
  year = {1996},
  volume = {4},
  pages = {1287--1295},
  number = {9},
}

@ARTICLE{Hermans2007,
  author = {Hermans, F and Tsiporkova, E},
  title = {Merging Microarray Cell Synchronization Experiments Through Curve
	Alignment},
  journal = {Bioinformatics},
  year = {2007},
  volume = {23},
  pages = {64-70},
  number = {2},
  doi = {10.1093/bioinformatics/btl320},
}

@INPROCEEDINGS{Huang2002,
  author = {Huang, B. and Kinsner, W.},
  title = {{ECG} Frame Classification Using Dynamic Time Warping},
  booktitle = {Proceedings of the Canadian Conference on Electrical and Computer Engineering --
	IEEE CCECE 2002},
  year = {2002},
  editor = {W. Kinsner and A. Sebak and K. Ferens},
  volume = {2},
  pages = {1105--1110},
  address = {Los Alamitos, CA, USA},
  publisher = {IEEE Computer Society},
  doi = {10.1109/CCECE.2002.1013101},
}

@ARTICLE{Itakura1975,
  author = {Itakura, F.},
  title = {Minimum Prediction Residual Principle Applied to Speech Recognition},
  journal = {{IEEE} Transactions on Acoustics, Speech, and Signal Processing},
  year = {1975},
  volume = {23},
  pages = {67--72},
  number = {1},
}

@ARTICLE{Kartikeyan1989,
  author = {B. Kartikeyan and A. Sarkar},
  title = {Shape Description by Time Series},
  journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
  year = {1989},
  volume = {11},
  pages = {977--984},
  number = {9},
  address = {Washington, DC, USA},
  doi = {10.1109/34.35501},
  publisher = {IEEE Computer Society},
}

@ARTICLE{Keogh2005,
  author = {Keogh, Eamonn and Ratanamahatana, Chotirat Ann},
  title = {Exact Indexing of Dynamic Time Warping},
  journal = {Knowledge and Information Systems},
  year = {2005},
  volume = {7},
  pages = {358--386},
  number = {3},
  doi = {10.1007/s10115-004-0154-9}
}

@ARTICLE{Latecki2007,
  author = {Latecki, Longin Jan and Megalooikonomou, Vasileios and Wang, Qiang
	and Yu, Deguang},
  title = {An Elastic Partial Shape Matching Technique},
  journal = {Pattern Recognition},
  year = {2007},
  volume = {40},
  pages = {3069--3080},
  number = {11},
}

@INPROCEEDINGS{Mori2006,
  author = {Mori, A. and Uchida, S. and Kurazume, R. and Taniguchi, R. and Hasegawa,
	T. and Sakoe, H.},
  title = {Early Recognition and Prediction of Gestures},
  booktitle = {Proceedings of the 18th International Conference on Pattern Recognition -- ICPR 2006},
  year = {2006},
  editor = {Bob Werner},
  volume = {3},
  pages = {560--563},
  address = {Los Alamitos, CA, USA},
  publisher = {IEEE Computer Society},
  doi = {10.1109/ICPR.2006.467},
}

@ARTICLE{Myers1980,
  author = {Myers, C. and Rabiner, L. and Rosenberg, A.},
  title = {Performance Tradeoffs in Dynamic Time Warping Algorithms for Isolated
	Word Recognition},
  journal = {{IEEE} Transactions on Acoustics, Speech, and Signal Processing},
  year = {1980},
  volume = {28},
  pages = {623--635},
  number = {6},
}

@ARTICLE{Oka1998,
  author = {Oka, R.},
  title = {Spotting Method for Classification of Real World Data},
  journal = {The Computer Journal},
  year = {1998},
  volume = {41},
  pages = {559-565},
  number = {8},
  doi = {10.1093/comjnl/41.8.559},
}

@MANUAL{R,
  title		= {\proglang{R}: {A} Language and Environment for Statistical Computing},
  author	= {{\proglang{R} Development Core Team}},
  organization	= {\proglang{R} Foundation for Statistical Computing},
  address	= {Vienna, Austria},
  year		= {2009},
  note          = {{ISBN} 3-900051-07-0},
  url		= {http://www.R-project.org/}
}

@BOOK{Rabiner1993,
  title = {Fundamentals of Speech Recognition},
  publisher = {Prentice-Hall},
  year = {1993},
  author = {Lawrence Rabiner and Biing-Hwang Juang},
  address = {Upper Saddle River, NJ, USA},
}

@ARTICLE{Rabiner1978,
  author = {Rabiner, L. and Rosenberg, A. and Levinson, S.},
  title = {Considerations in Dynamic Time Warping Algorithms for Discrete Word
	Recognition},
  journal = {{IEEE} Transactions on Acoustics, Speech, and Signal Processing},
  year = {1978},
  volume = {26},
  pages = {575--582},
  number = {6},
}

@INPROCEEDINGS{Rath2003,
  author = {Rath, T. M. and Manmatha, R.},
  title = {Word Image Matching Using Dynamic Time Warping},
  booktitle = {Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern
	Recognition},
  year = {2003},
  editor = {Manmatha, R.},
  volume = {2},
  pages = {II-521--II-527},
  address = {Los Alamitos, CA, USA},
  publisher = {IEEE Computer Society},
}

@ARTICLE{Sakoe1979,
  author = {Sakoe, H.},
  title = {Two-Level {DP}-matching -- {A} Dynamic Programming-Based Pattern
	Matching Algorithm for Connected Word Recognition},
  journal = {IEEE Transactions on Acoustics, Speech, and Signal Processing},
  year = {1979},
  volume = {27},
  pages = {588--595},
  number = {6},
}

@ARTICLE{Sakoe1978,
  author = {Sakoe, H. and Chiba, S.},
  title = {DynaMic Programming Algorithm Optimization for Spoken Word Recognition},
  journal = {{IEEE} Transactions on Acoustics, Speech, and Signal Processing},
  year = {1978},
  volume = {26},
  pages = {43--49},
  number = {1},
}

@INPROCEEDINGS{Sakoe1971,
  author = {Hiroaki Sakoe and Seibi Chiba},
  title = {A Dynamic Programming Approach to Continuous Speech Recognition},
  booktitle = {Proceedings of the Seventh International Congress on Acoustics},
  year = {1971},
  volume = {3},
  pages = {65--69},
  address = {Budapest},
  publisher = {{Akad\'{e}miai} {Kiad\'{o}}},
}

@INPROCEEDINGS{Sakurai2007,
  author = {Sakurai, Y. and Faloutsos, C. and Yamamuro, M.},
  title = {Stream Monitoring Under the Time Warping Distance},
  booktitle = {Proceedings of the IEEE 23rd International Conference on Data Engineering -- ICDE
	2007},
  year = {2007},
  editor = {Ling Liu and Adnan Yazici and Rada Chirkova and Vincent Oria},
  pages = {1046--1055},
  address = {Los Alamitos, CA, USA},
  month = {15--20 April},
  publisher = {IEEE Computer Society},
  doi = {10.1109/ICDE.2007.368963},
}

@INPROCEEDINGS{Salvador2004,
  author = {Salvador, S. and Chan, P.},
  title = {{FastDTW}: Toward Accurate Dynamic Time Warping in Linear Time and
	Space},
  booktitle = {KDD Workshop on Mining Temporal and Sequential Data},
  year = {2004},
  editor = {K. P. Unnikrishnan and Ramasamy Uthurusamy and Jiawei Han},
  pages = {70-80},
  address = {New York, NY, USA},
  organization = {ACM},
}

@INPROCEEDINGS{dtw-ecg,
  author = {Syeda-Mahmood, T. and Beymer, D. and Wang, Fei},
  title = {Shape-Based Matching of {ECG} Recordings},
  booktitle = {Engineering in Medicine and Biology Society, 2007. EMBS 2007. 29th
	Annual International Conference of the IEEE},
  year = {2007},
  editor = {Andr\'e Dittmar and John Clark and Eric McAdams and Nigel Lovell},
  pages = {2012--2018},
  address = {Los Alamitos, CA, USA},
  publisher = {IEEE Computer Society},
  doi = {10.1109/IEMBS.2007.4352714},
}

@INPROCEEDINGS{Tak2007,
  author = {Tak, Yoon-Sik},
  title = {A Leaf Image Retrieval Scheme Based on Partial Dynamic Time Warping
	and Two-Level Filtering},
  booktitle = {Proceedings of the 7th IEEE International Conference on Computer and Information
	Technology -- CIT 2007},
  year = {2007},
  editor = {Daming Wei and Toshiaki Miyazaki and Incheon Paik},
  pages = {633--638},
  address = {Los Alamitos, CA, USA},
  publisher = {IEEE Computer Society},
  doi = {10.1109/CIT.2007.158},
}

@ARTICLE{Tormene2008,
  author = {Paolo Tormene and Toni Giorgino and Silvana Quaglini and Mario Stefanelli},
  title = {Matching Incomplete Time Series with Dynamic Time Warping: An Algorithm
	and an Application to Post-Stroke Rehabilitation},
  journal = {Artificial Intelligence in Medicine},
  year = {2009},
  volume = {45},
  pages = {11--34},
  number = {1},
  doi = {10.1016/j.artmed.2008.11.007},
  institution = {Laboratory for Biomedical Informatics, Computer Engineering and Systems
	Science, Universitŕ di Pavia, Via Ferrata 1, Pavia, Italy},
}

@INPROCEEDINGS{Tuzcu2005,
  author = {Tuzcu, V. and Nas, S.},
  title = {Dynamic Time Warping as a Novel Tool in Pattern Recognition of {ECG}
	Changes in Heart Rhythm Disturbances},
  booktitle = {Proceedings of the IEEE International Conference on Systems, Man and Cybernetics},
  year = {2005},
  editor = {Mo Jamshidi and Mark Johnson and Philip Chen},
  volume = {1},
  pages = {182--186 Vol. 1},
  address = {Los Alamitos, CA, USA},
  publisher = {IEEE Computer Society},
  doi = {10.1109/ICSMC.2005.1571142},
}

@ARTICLE{Velichko1970,
  author = {V. M. Velichko and N. G. Zagoruyko},
  title = {Automatic Recognition of 200 Words},
  journal = {International Journal of Man-Machine Studies},
  year = {1970},
  volume = {2},
  pages = {223--234},
}

@INPROCEEDINGS{WeiKX06,
  author = {Li Wei and Eamonn Keogh and Xiaopeng Xi},
  title = {{SAX}ually Explicit Images: Finding Unusual Shapes},
  booktitle = {Sixth International Conference on Data Mining 2006 -- {ICDM} '06},
  year = {2006},
  editor = {Christopher W. Clifton and Ning Zhong and Jiming Liu and Benjamin
	W. Wah and Xindong Wu},
  pages = {711--720},
  address = {Los Alamitos, CA, USA},
  publisher = {IEEE Computer Society},
  doi = {10.1109/ICDM.2006.138},
}

@Article{Bioconductor,
 author        = {Robert C. Gentleman and Vincent J. Carey and Douglas M.
                  Bates and Ben Bolstad and Marcel Dettling and Sandrine
                  Dudoit and Byron Ellis and Laurent Gautier and Yongchao
                  Ge and Jeff Gentry and Kurt Hornik and Torsten Hothorn
                  and Wolfgang Huber and Stefano Iacus and  Rafael
                  Irizarry and Friedrich Leisch and Cheng Li and Martin
                  Maechler and Anthony J. Rossini and Gunther Sawitzki
                  and Colin Smith and Gordon Smyth and Luke Tierney
                  and Jean Y. H. Yang and  Jianhua Zhang},
 title         = {\pkg{Bioconductor}: Open Software Development for
                  Computational Biology and Bioinformatics},
 journal       = {Genome Biology},
 volume        = {5},
 year          = {2004},
 pages         = {R80},
 url           = {http://genomebiology.com/2004/5/10/R80}
}

@TechReport{TraMineR,
 title         = {Mining Sequence Data in \proglang{R} with
                  \pkg{TraMineR}: {A} User's Guide},
 author        = {Alexis Gabadinho and Gilbert Ritschard and Matthias
                  Studer and Nicolas S. M\"uller},
 institution   = {Department of Econometrics and Laboratory of
                  Demography, University of Geneva},
 year          = {2009},
 address       = {Geneva},
 url           = {http://mephisto.unige.ch/TraMineR/}
}