b08f306 | Alexander G. de G. Matthews | 09 September 2016, 10:59:46 UTC | Tf wraps (#198) * Renaming tf_hacks to tf_wraps * Changing tf_hacks to tf_wraps in code. * adding a tf_hacks file that raises deprecationwarnings * release notes * bumpng version on docs * importing tf_hacks, tf_wraps | 09 September 2016, 10:59:46 UTC |
61b0659 | Mark van der Wilk | 09 September 2016, 10:42:54 UTC | Verbosity flags for optimisation and compilation now used (#202) * Verbosity flags for optimisation and compilation now used. * Jitter level now read from config. * Exclude testing print statements * Added missed jitter levels. * bugfix in gpmc.py | 09 September 2016, 10:42:54 UTC |
9fbdec8 | Alexander G. de G. Matthews | 09 September 2016, 09:03:11 UTC | Merge pull request #191 from GPflow/config Config | 09 September 2016, 09:03:11 UTC |
e1eb94e | James Hensman | 09 September 2016, 08:14:21 UTC | minor improvements to config parsing | 09 September 2016, 08:14:21 UTC |
5c110da | James Hensman | 09 September 2016, 08:06:22 UTC | parser tests | 09 September 2016, 08:06:22 UTC |
f436f52 | James Hensman | 08 September 2016, 20:37:20 UTC | adding tests for config | 08 September 2016, 20:37:20 UTC |
16a6a63 | James Hensman | 08 September 2016, 16:38:18 UTC | Merge branch 'config' of github.com:gpflow/GPflow into config | 08 September 2016, 16:38:18 UTC |
f501cbe | James Hensman | 08 September 2016, 16:38:05 UTC | config tests | 08 September 2016, 16:38:05 UTC |
d088d91 | James Hensman | 08 September 2016, 16:21:12 UTC | rejigging settings.py to be easier to test | 08 September 2016, 16:21:12 UTC |
8a1d6f0 | James Hensman | 08 September 2016, 16:11:30 UTC | Merge branch 'master' into config | 08 September 2016, 16:11:30 UTC |
bf0118d | Alexander G. de G. Matthews | 08 September 2016, 15:50:07 UTC | Correction to link. (#196) * Correction to link. * Correction to version. * Updating version in intro.rst | 08 September 2016, 15:50:07 UTC |
fa65f01 | Alexander G. de G. Matthews | 08 September 2016, 14:22:24 UTC | Merge branch 'master' into config | 08 September 2016, 14:22:24 UTC |
161846e | Alexander G. de G. Matthews | 08 September 2016, 14:07:04 UTC | Merge pull request #140 from GPflow/sphinx Making the documentation more official | 08 September 2016, 14:07:04 UTC |
273ea18 | alexggmatthews | 08 September 2016, 13:56:50 UTC | Manual merge of master into sphinx branch. | 08 September 2016, 13:56:50 UTC |
ddc5389 | James Hensman | 01 September 2016, 11:07:59 UTC | empty commit for codeship | 01 September 2016, 11:07:59 UTC |
bb33a65 | James Hensman | 01 September 2016, 10:57:16 UTC | typo | 01 September 2016, 10:57:16 UTC |
f2be449 | James Hensman | 01 September 2016, 10:54:51 UTC | a first attempt at settings | 01 September 2016, 10:54:51 UTC |
e974f46 | Alexander G. de G. Matthews | 30 August 2016, 10:40:24 UTC | Merge pull request #183 from GPflow/scoping Scoping | 30 August 2016, 10:40:24 UTC |
537c8cc | James Hensman | 30 August 2016, 09:59:21 UTC | Merge branch 'scoping' of github.com:gpflow/GPflow into scoping | 30 August 2016, 09:59:21 UTC |
4042e03 | James Hensman | 30 August 2016, 09:59:12 UTC | adding some simple tests for scopes | 30 August 2016, 09:59:12 UTC |
e297601 | Alexander G. de G. Matthews | 30 August 2016, 09:02:50 UTC | Merge branch 'master' into scoping | 30 August 2016, 09:02:50 UTC |
3b5ee9b | Alexander G. de G. Matthews | 30 August 2016, 09:02:36 UTC | Merge pull request #184 from GPflow/imports removing potential for circular import | 30 August 2016, 09:02:36 UTC |
456c710 | James Hensman | 30 August 2016, 08:27:45 UTC | slight refinement of automated scopes | 30 August 2016, 08:27:45 UTC |
98dc8e7 | James Hensman | 30 August 2016, 08:07:14 UTC | empty commit to try to trigger codecov | 30 August 2016, 08:07:14 UTC |
ed14fd8 | James Hensman | 29 August 2016, 20:11:33 UTC | removing potential for circular import | 29 August 2016, 20:11:33 UTC |
54540ce | James Hensman | 29 August 2016, 18:02:21 UTC | some debugging | 29 August 2016, 18:02:21 UTC |
fdcaf94 | James Hensman | 29 August 2016, 17:29:51 UTC | adding a decorator for scoping with | 29 August 2016, 17:29:51 UTC |
dc746f3 | James Hensman | 29 August 2016, 17:19:00 UTC | adding simple scoping for KLs, conditionals | 29 August 2016, 17:19:00 UTC |
c89eb72 | Alexander G. de G. Matthews | 25 August 2016, 15:45:23 UTC | Merge pull request #182 from GPflow/revert-ltriang Remove default use of the LowerTriangular transform, for speed reasons | 25 August 2016, 15:45:23 UTC |
8295cef | Mark van der Wilk | 25 August 2016, 15:23:32 UTC | Remove default use of the LowerTriangular transform, for speed reasons. | 25 August 2016, 15:23:32 UTC |
23b47f5 | Alexander G. de G. Matthews | 24 August 2016, 12:06:47 UTC | Merge pull request #179 from GPflow/badge switching coverage badge to codecov | 24 August 2016, 12:06:47 UTC |
f5bc26e | James Hensman | 24 August 2016, 11:54:58 UTC | Merge branch 'master' into badge | 24 August 2016, 11:54:58 UTC |
ee40ad5 | James Hensman | 24 August 2016, 11:52:56 UTC | switching coverage badge to codecov | 24 August 2016, 11:52:56 UTC |
0f8e58c | Mark van der Wilk | 22 August 2016, 18:51:27 UTC | LowerTriangularTransform now also takes matrix, not just array of matrices (#176) * LowerTriangularTransform now also takes matrix, not just array of matrices. * Added docstring. | 22 August 2016, 18:51:27 UTC |
ae39349 | Mark van der Wilk | 22 August 2016, 14:58:04 UTC | Fixed compile bug when using gcc5. (#175) * Fixed compile bug when using gcc5. | 22 August 2016, 14:58:04 UTC |
67cfd5d | Alexander G. de G. Matthews | 19 August 2016, 11:52:31 UTC | Merge pull request #168 from GPflow/hmc_options adding optional Lmin to hmc procedure | 19 August 2016, 11:52:31 UTC |
689fe4b | James Hensman | 19 August 2016, 11:11:29 UTC | updated tests to pass Lmin argument | 19 August 2016, 11:11:29 UTC |
934e5d9 | Alexander G. de G. Matthews | 18 August 2016, 17:23:32 UTC | Merge branch 'master' into hmc_options | 18 August 2016, 17:23:32 UTC |
c2cda9e | James Hensman | 18 August 2016, 16:03:19 UTC | adding optional Lmin to hmc procedure | 18 August 2016, 16:03:19 UTC |
62472ea | Alexander G. de G. Matthews | 18 August 2016, 15:08:01 UTC | Merge pull request #167 from GPflow/hmc_options adding extra args to model.sample to pass through to hmc | 18 August 2016, 15:08:01 UTC |
cbc60d4 | James Hensman | 18 August 2016, 14:43:30 UTC | adding extra args to model.sample to pass through to hmc | 18 August 2016, 14:45:01 UTC |
40b13f5 | James Hensman | 16 August 2016, 07:36:44 UTC | Merge branch 'mathDR-pretty_plot' into sphinx | 16 August 2016, 07:36:44 UTC |
7058fb0 | James Hensman | 16 August 2016, 07:35:53 UTC | ipynb merge | 16 August 2016, 07:35:53 UTC |
bfacae6 | mathDR | 15 August 2016, 23:19:00 UTC | added fill_between plotting and maxiter | 15 August 2016, 23:19:00 UTC |
28b19a6 | James Hensman | 15 August 2016, 17:13:05 UTC | silly git, those are duplicated entries. re-merging setup.py | 15 August 2016, 17:13:05 UTC |
2635f31 | James Hensman | 15 August 2016, 16:44:11 UTC | Merge branch 'sphinx' of github.com:gpflow/GPflow into sphinx | 15 August 2016, 16:44:11 UTC |
3510670 | James Hensman | 15 August 2016, 16:43:58 UTC | simple merge in setup.py | 15 August 2016, 16:43:58 UTC |
63bb484 | Mark van der Wilk | 15 August 2016, 16:43:02 UTC | Fixed custom op test failing (#165) * Fixed custom op test failing. * Incrementing version number and adding description of new version. * Changes to make setup.py work correctly with tfops | 15 August 2016, 16:43:02 UTC |
5814d8d | Alexander G. de G. Matthews | 15 August 2016, 16:03:17 UTC | Merge branch 'master' into sphinx | 15 August 2016, 16:03:17 UTC |
1076e47 | Alexander G. de G. Matthews | 15 August 2016, 11:10:45 UTC | Fixes #161 (#164) * Fixes #161 * pep8ified test_likelihoods | 15 August 2016, 11:10:45 UTC |
d9707b8 | James Hensman | 15 August 2016, 09:37:12 UTC | adding docs badge | 15 August 2016, 09:37:12 UTC |
0cb1ebb | James Hensman | 13 August 2016, 15:30:35 UTC | minor edits in milticlass notebook | 13 August 2016, 15:30:35 UTC |
dd454d4 | James Hensman | 12 August 2016, 21:05:42 UTC | added DM's suggestions of vgp notes | 12 August 2016, 21:05:42 UTC |
4874915 | James Hensman | 12 August 2016, 16:56:00 UTC | minor edits in vgp notebook | 12 August 2016, 16:56:00 UTC |
ae9e306 | James Hensman | 12 August 2016, 16:40:33 UTC | fixing some signs in VGP_notes | 12 August 2016, 16:40:33 UTC |
55cd0f4 | James Hensman | 12 August 2016, 07:28:15 UTC | slight updates to VGP notes | 12 August 2016, 07:28:15 UTC |
b413037 | James Hensman | 11 August 2016, 16:01:11 UTC | minor edits | 11 August 2016, 16:01:11 UTC |
f8a900e | James Hensman | 11 August 2016, 15:59:09 UTC | some tidying in rst files | 11 August 2016, 15:59:09 UTC |
5dd6fc3 | James Hensman | 11 August 2016, 15:43:08 UTC | adding notes for VGP implementation | 11 August 2016, 15:43:08 UTC |
7baf773 | James Hensman | 11 August 2016, 13:46:46 UTC | autodoccing priors, likelihoods, etc | 11 August 2016, 13:46:46 UTC |
97626fb | James Hensman | 11 August 2016, 13:06:37 UTC | more docstring improvements | 11 August 2016, 13:06:37 UTC |
f45232e | James Hensman | 11 August 2016, 12:54:20 UTC | significant improvements to autodoccing | 11 August 2016, 12:54:20 UTC |
b498690 | James Hensman | 11 August 2016, 10:32:02 UTC | autodoc works better with autosummary | 11 August 2016, 10:32:02 UTC |
6f36c1a | James Hensman | 10 August 2016, 19:26:11 UTC | tf0.8 as minimum | 10 August 2016, 19:26:11 UTC |
1ad6ed4 | James Hensman | 10 August 2016, 19:05:57 UTC | spend a long time fiddling with an equation | 10 August 2016, 19:05:57 UTC |
414cd19 | James Hensman | 10 August 2016, 17:46:52 UTC | fiddling with setup.py | 10 August 2016, 17:46:52 UTC |
4c8c939 | James Hensman | 10 August 2016, 17:33:26 UTC | chanegd manifest | 10 August 2016, 17:33:26 UTC |
26f7f24 | James Hensman | 10 August 2016, 17:26:49 UTC | first attempt at a manifest file | 10 August 2016, 17:26:49 UTC |
847802d | James Hensman | 10 August 2016, 17:19:12 UTC | forcing absolute imports | 10 August 2016, 17:19:12 UTC |
e488d6f | James Hensman | 10 August 2016, 17:08:49 UTC | fixing import error | 10 August 2016, 17:08:49 UTC |
fafac6a | James Hensman | 10 August 2016, 17:03:50 UTC | adding pandas to docs-require | 10 August 2016, 17:03:50 UTC |
88fdb65 | James Hensman | 10 August 2016, 17:01:24 UTC | adding scipt to docs_require | 10 August 2016, 17:01:24 UTC |
ed2b401 | James Hensman | 10 August 2016, 16:36:16 UTC | using python 3.4 on readthedocs | 10 August 2016, 16:36:16 UTC |
915388a | James Hensman | 10 August 2016, 16:27:45 UTC | adding tensorflow to docs_require | 10 August 2016, 16:27:45 UTC |
b4188fe | James Hensman | 10 August 2016, 16:18:29 UTC | built an intro page based on the readme | 10 August 2016, 16:18:29 UTC |
dc6c830 | James Hensman | 10 August 2016, 13:55:50 UTC | adding docs_require.txt | 10 August 2016, 13:55:50 UTC |
f8b24a1 | James Hensman | 10 August 2016, 13:37:37 UTC | Merge branch 'master' into sphinx | 10 August 2016, 13:37:37 UTC |
c50f9c9 | James Hensman | 10 August 2016, 13:37:19 UTC | improved headings | 10 August 2016, 13:37:19 UTC |
f5e5303 | James Hensman | 10 August 2016, 13:33:46 UTC | Merge branch 'master' into sphinx | 10 August 2016, 13:33:46 UTC |
b3dab02 | James Hensman | 10 August 2016, 13:07:00 UTC | use batch ops in KLs and conditionals (#159) * adding a simple Uniform prior * fixed sign bug * removed python loops from KL code * removed python loop from conditionals * removing loops from conditionals.py * removed loops form vgp * removing dead code | 10 August 2016, 13:07:00 UTC |
3cc5604 | James Hensman | 10 August 2016, 09:59:44 UTC | adding coregion kernel (#139) * adding coregion kernel * tests for Coregino kernel * slight iprovements to Coregion docstring | 10 August 2016, 09:59:44 UTC |
57a6c69 | James Hensman | 10 August 2016, 09:38:35 UTC | adding a simple Uniform prior (#146) * adding a simple Uniform prior * fixed sign bug | 10 August 2016, 09:38:35 UTC |
5726dd4 | Mark van der Wilk | 09 August 2016, 18:39:33 UTC | Fix covariance overparameterisation (#150) GPflow often optimizes positive-definite matrices. To maintain positive-definiteness without constrained optimization, a lower-triangular matrix is optimized. Sigma + L L ^T The previous approach to optimizing L was to ignore the upper half. The mean that there were some extra variables in the optimization vector, which did nothing. This PR implements a tensorflow op which transforms back-and-forth between triangular matrix L and a 'packed' vector representation. The result is that there are no redundant parameters in the optimization vector. | 09 August 2016, 18:39:33 UTC |
9c2faf6 | James Hensman | 09 August 2016, 09:41:58 UTC | add Apache headers (fix #135) (#157) | 09 August 2016, 09:41:58 UTC |
87dad9f | Mark van der Wilk | 09 August 2016, 09:21:08 UTC | Fixed optimiser options to be consistent with scipy (#153) * Fixed optimiser options to be consistent with scipy. * Bumped version & added deprecation warnings. | 09 August 2016, 09:21:08 UTC |
3f6f063 | Mark van der Wilk | 02 August 2016, 11:06:21 UTC | Get tests working with Python 3. (#152) - Added relative imports (.reference) - Changed all failIf/Unless to the non-deprecated assertTrue/False. | 02 August 2016, 11:06:21 UTC |
2d98580 | Mark van der Wilk | 01 August 2016, 16:53:36 UTC | Merge pull request #151 from GPflow/active_dims_pickle_bug make kernels with active_dims pickleable | 01 August 2016, 16:53:36 UTC |
a509447 | James Hensman | 31 July 2016, 19:17:53 UTC | adding some notes on structure (unfinished) | 31 July 2016, 19:17:53 UTC |
1da8382 | James Hensman | 29 July 2016, 19:38:40 UTC | Merge branch 'master' into active_dims_pickle_bug | 29 July 2016, 19:38:40 UTC |
bd0b423 | James Hensman | 29 July 2016, 19:27:15 UTC | make kernels with active_dims pickleable | 29 July 2016, 19:27:15 UTC |
18ec355 | James Hensman | 29 July 2016, 14:55:19 UTC | Merge branch 'master' into sphinx | 29 July 2016, 14:55:19 UTC |
e155d76 | James Hensman | 29 July 2016, 09:25:43 UTC | Track logprobs (#136) * added code for returning log-densities from HMC * added test code for log-prob tracking * adding access to logprobs from model class | 29 July 2016, 09:25:43 UTC |
6fa46bb | James Hensman | 28 July 2016, 16:30:51 UTC | enables pickling with fixed parameters (#141) | 28 July 2016, 16:30:51 UTC |
e0719ed | James Hensman | 28 July 2016, 16:12:19 UTC | some small edits to keep GPflow working with python 3 (#137) * python3.5 compat in test_likelihoods * py35 compatibility in autoflow | 28 July 2016, 16:12:19 UTC |
b4a8d1b | James Hensman | 27 July 2016, 14:40:51 UTC | made transforms all pickleable (#134) | 27 July 2016, 14:40:51 UTC |
47cdb8f | James Hensman | 27 July 2016, 11:34:20 UTC | latex related edits | 27 July 2016, 11:34:20 UTC |
ce59679 | James Hensman | 26 July 2016, 20:00:29 UTC | work on mcmc notebook | 26 July 2016, 20:00:29 UTC |
3438b29 | James Hensman | 26 July 2016, 16:49:37 UTC | minor kernels edits | 26 July 2016, 16:49:37 UTC |
9342d0c | James Hensman | 26 July 2016, 16:39:23 UTC | adding kernels intro notebook | 26 July 2016, 16:39:23 UTC |
e921bdd | James Hensman | 26 July 2016, 11:10:57 UTC | includgin classification notebook | 26 July 2016, 11:10:57 UTC |