https://github.com/fenderglass/Ragout

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Revision Author Date Message Commit Date
44c0494 merge master 09 October 2019, 17:18:44 UTC
bd2fba7 specifying networkx version 2.2 19 August 2019, 19:26:42 UTC
2d93fe7 Update README.md 08 April 2019, 22:51:35 UTC
ec749b9 deleted old unneeded scripts, fix #37 and #36 08 April 2019, 22:38:40 UTC
5159e50 fix #38 08 April 2019, 22:34:47 UTC
54a864f remove debug print 08 April 2019, 22:12:04 UTC
a9d35f7 setup file update 08 April 2019, 21:24:40 UTC
3b50427 2.2 08 April 2019, 21:15:29 UTC
5292c29 Newick module moved to ragout root, installation instructions update 08 April 2019, 21:14:14 UTC
d30f5ce Merge pull request #41 from latticetower/master Make everything work with networkx >= 2.2. 08 April 2019, 19:55:07 UTC
b32c173 fix another permission error during travis-ci run 26 March 2019, 15:23:10 UTC
c3bc4cc fix permission error during travis-ci run 26 March 2019, 14:51:44 UTC
9e0e4e5 add networkx dependency to travis-ci script 26 March 2019, 14:46:01 UTC
ae9e1d1 remove redundant round brackets: edges() -> edges, nodes() -> nodes 26 March 2019, 14:26:56 UTC
f4d4e22 fix AttributeError: 'set' object has no attribute 'items' 25 March 2019, 14:08:08 UTC
e3a06ef fix TypeError: object of type 'dictionary-keyiterator' has no len() 25 March 2019, 13:32:22 UTC
d49a5c4 replace edges_iter iterator with edges iterator in networkx graphs 25 March 2019, 13:09:30 UTC
f865c3e remove networkx from lib dir 25 March 2019, 13:04:12 UTC
758500e Merge branch 'devel' 17 March 2019, 01:49:37 UTC
1637fbf Merge branch 'master' into devel 16 March 2019, 00:05:00 UTC
fbffe40 gff parser for maf2synteny 16 March 2019, 00:04:27 UTC
c21e237 Citations update 31 October 2018, 01:34:43 UTC
9b706fa version update 30 July 2018, 20:00:30 UTC
2b3e6d5 installation script + repository reorganisation 28 July 2018, 00:03:15 UTC
a68b9db bioconda badge 27 July 2018, 01:48:58 UTC
51ecff3 docs update 2 27 July 2018, 01:39:47 UTC
2300e45 docs update 27 July 2018, 00:03:16 UTC
67a513a a fix for sorting leaves by distance function 26 July 2018, 23:06:30 UTC
da193f0 updated newick packages source, now consistent with Bioconda version 26 July 2018, 20:31:49 UTC
119e6dc some auxialary scipts changes 18 July 2018, 20:14:16 UTC
2c85472 non-recursive dfs implementation + some logging improvements 18 July 2018, 20:12:54 UTC
626d759 some changes 09 July 2018, 19:18:39 UTC
0cb7679 custom block sizes 08 July 2018, 04:15:09 UTC
f453881 minimap verification script 06 July 2018, 02:36:51 UTC
71562fc a fix for empty parent scaffold during merging 20 December 2016, 19:41:37 UTC
0543d6d more informative message for empty permutation file 20 December 2016, 19:41:06 UTC
78e959d a fix for genomes with dots 03 December 2016, 01:15:25 UTC
70de692 centered logo 28 November 2016, 21:11:23 UTC
766b2ec figure fix 28 November 2016, 21:07:05 UTC
8322e1d logo 28 November 2016, 21:05:37 UTC
a603106 typo 28 November 2016, 20:39:26 UTC
c9b5d38 minor docs update 28 November 2016, 20:31:55 UTC
6eed507 news 28 November 2016, 20:22:31 UTC
a75e60e typo 28 November 2016, 20:19:24 UTC
26d4aac refinement disabled by default 28 November 2016, 20:18:42 UTC
4559980 documentation update 28 November 2016, 20:05:29 UTC
a7b6644 error if no unique synteny blocks 14 November 2016, 19:10:13 UTC
83789c3 Merge branch 'master' into devel 09 November 2016, 23:35:46 UTC
7ec4e12 counting target-specific breakpoints, --inMemory option for hal removed 09 November 2016, 23:35:13 UTC
ebd9205 Update README.md 07 November 2016, 01:04:53 UTC
83f232f Merge branch 'master' into devel 19 August 2016, 23:50:55 UTC
4bfbda6 fix negative gaps after assebly refinement 19 August 2016, 19:44:37 UTC
343c077 oups 09 August 2016, 01:25:37 UTC
4674e03 some refactoring and logging improvement 09 August 2016, 01:14:00 UTC
27e6ef3 readme 17 February 2016, 20:49:21 UTC
3bbd6c9 an option to disable chimera detection module + sorting output fasta 17 February 2016, 20:30:17 UTC
b3bf289 Merge branch 'master' into devel 17 February 2016, 19:29:27 UTC
024d279 tests fixed 23 January 2016, 02:49:25 UTC
8283a58 small improvement 23 January 2016, 02:13:28 UTC
73def46 a small fix in verify-order 23 January 2016, 02:11:45 UTC
b4ec394 test fix 19 January 2016, 02:30:05 UTC
f2e21cd a small fix for verification script 19 January 2016, 02:23:37 UTC
e1cc723 maf2synteny update 18 November 2015, 03:26:21 UTC
f95ea61 Update README.md 12 November 2015, 22:16:22 UTC
be8d780 Update README.md 12 November 2015, 22:14:48 UTC
4441312 chromosome renaming 07 November 2015, 02:40:53 UTC
f0f5d82 Merge branch 'devel' into chr_map 06 November 2015, 00:27:47 UTC
2c599db gaps without upper limit 05 November 2015, 22:52:41 UTC
8d58eaf minor refactoring 04 November 2015, 22:33:06 UTC
245b80c Merge branch 'devel' into chr_map 04 November 2015, 04:10:23 UTC
246ddba a fix for gap estimation 04 November 2015, 03:56:48 UTC
2f3b5c4 joins from chromosome map 02 November 2015, 19:38:37 UTC
eb471cf a small improvement 01 November 2015, 02:51:52 UTC
7e640fe chromosome map support 01 November 2015, 02:41:09 UTC
596d7c0 some refactoring 01 November 2015, 02:40:24 UTC
1a3ae32 Update README.md 30 October 2015, 21:37:12 UTC
f37511c minor docs change 29 September 2015, 00:25:49 UTC
19d3ad4 wrong date 29 September 2015, 00:08:17 UTC
2284233 1.2 29 September 2015, 00:07:33 UTC
bdcccea Merge branch 'devel' 28 September 2015, 23:46:25 UTC
fd9b35c minor 28 September 2015, 23:46:14 UTC
fa6f861 Merge branch 'devel' of https://github.com/fenderglass/Ragout into devel 28 September 2015, 23:31:21 UTC
0a93120 a fix for empty links information 28 September 2015, 23:31:02 UTC
eb1692c documantation improved 28 September 2015, 18:38:57 UTC
04bb6e1 priority queue removed 25 September 2015, 20:57:32 UTC
2861ecb a fix in rearrangement projection 25 September 2015, 20:44:56 UTC
a3bd4e5 output generator refactoring 25 September 2015, 01:00:30 UTC
1338e4b partially unplaced contigs 24 September 2015, 02:04:50 UTC
581be6b deterministic tree construction + fix in sorting by tree distance 24 September 2015, 01:43:37 UTC
545c417 script renaming 24 September 2015, 01:42:03 UTC
061828f chromosome names in support fields 12 September 2015, 14:18:04 UTC
03e5624 ragout version in log 12 September 2015, 12:15:21 UTC
be33c34 small fix for merge algorithm 09 September 2015, 16:55:11 UTC
3c142fd a fix for one-contig scaffolds 09 September 2015, 16:40:21 UTC
610f222 beta version notice 25 August 2015, 17:46:15 UTC
11c2a94 Merge branch 'devel' into path_cover Syncronizing branches 25 August 2015, 17:29:16 UTC
9780da0 minor documentation change 25 August 2015, 17:17:56 UTC
3b9522a fixed one-contig scaffolds 20 August 2015, 11:49:14 UTC
8a30ee7 handling scaffolds from a single fragment 19 August 2015, 10:33:47 UTC
500b10e documentation improved 18 August 2015, 10:55:51 UTC
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