| d3bc49a | fenderglass | 22 June 2014, 15:21:31 UTC | fixed debug directory creation | 22 June 2014, 15:21:31 UTC |
| 848cefa | fenderglass | 22 June 2014, 11:18:27 UTC | mammals notice | 22 June 2014, 11:18:27 UTC |
| b0c4871 | fenderglass | 22 June 2014, 10:58:46 UTC | oups | 22 June 2014, 10:58:46 UTC |
| ac052d0 | fenderglass | 22 June 2014, 10:55:55 UTC | small fix | 22 June 2014, 10:55:55 UTC |
| bf19ec7 | fenderglass | 22 June 2014, 10:54:10 UTC | assemblers mentioned | 22 June 2014, 10:54:10 UTC |
| 00a9cf3 | fenderglass | 22 June 2014, 10:41:11 UTC | site name | 22 June 2014, 10:41:11 UTC |
| 2265950 | fenderglass | 22 June 2014, 10:39:31 UTC | version up | 22 June 2014, 10:39:31 UTC |
| 2e27c91 | fenderglass | 22 June 2014, 10:37:19 UTC | copyright notice + some comments | 22 June 2014, 10:37:19 UTC |
| 80c7799 | fenderglass | 22 June 2014, 09:40:57 UTC | some refactoring and improvements | 22 June 2014, 09:40:57 UTC |
| 55078f9 | fenderglass | 21 June 2014, 23:17:28 UTC | minor | 21 June 2014, 23:17:28 UTC |
| 93f1995 | fenderglass | 21 June 2014, 22:51:04 UTC | C++0x | 21 June 2014, 22:51:04 UTC |
| e26a6e8 | fenderglass | 21 June 2014, 22:47:47 UTC | Makefiles | 21 June 2014, 22:47:47 UTC |
| 0520321 | fenderglass | 21 June 2014, 21:59:27 UTC | minor changes, unneeded scripts removed | 21 June 2014, 21:59:27 UTC |
| 8da35dc | fenderglass | 21 June 2014, 09:20:51 UTC | oups | 21 June 2014, 09:20:51 UTC |
| 66fe2be | fenderglass | 21 June 2014, 09:17:16 UTC | newick parser | 21 June 2014, 09:17:16 UTC |
| 7059a3e | fenderglass | 21 June 2014, 09:11:58 UTC | installation script fix | 21 June 2014, 09:11:58 UTC |
| 9dbde54 | fenderglass | 20 June 2014, 20:38:22 UTC | usage improved | 20 June 2014, 20:38:22 UTC |
| ff7fe5d | fenderglass | 20 June 2014, 20:34:41 UTC | another one | 20 June 2014, 20:34:41 UTC |
| 96d75db | fenderglass | 20 June 2014, 20:32:52 UTC | small fix | 20 June 2014, 20:32:52 UTC |
| 5a278a3 | fenderglass | 20 June 2014, 20:27:38 UTC | installation script fix | 20 June 2014, 20:27:38 UTC |
| 4a8415c | fenderglass | 20 June 2014, 17:16:35 UTC | driver script changed a bt | 20 June 2014, 17:16:35 UTC |
| debf51a | fenderglass | 20 June 2014, 17:06:07 UTC | minor | 20 June 2014, 17:06:07 UTC |
| f82c6c7 | fenderglass | 20 June 2014, 16:23:54 UTC | fasta i/o without biopython | 20 June 2014, 16:23:54 UTC |
| 3cdebcc | fenderglass | 20 June 2014, 14:15:06 UTC | back to simple distribution, networkx incorporated | 20 June 2014, 14:15:06 UTC |
| 12f0675 | fenderglass | 19 June 2014, 09:16:47 UTC | minor things | 19 June 2014, 09:16:47 UTC |
| 021ea16 | fenderglass | 19 June 2014, 08:26:01 UTC | no more static linking | 19 June 2014, 08:26:01 UTC |
| a4451b2 | fenderglass | 18 June 2014, 20:22:46 UTC | distance estimation with overlap graph | 18 June 2014, 20:22:46 UTC |
| 9671514 | fenderglass | 18 June 2014, 14:53:29 UTC | distance estimation | 18 June 2014, 14:53:29 UTC |
| 0399e58 | fenderglass | 17 June 2014, 21:43:47 UTC | -pypi | 17 June 2014, 21:43:47 UTC |
| b5f43a4 | fenderglass | 17 June 2014, 21:43:24 UTC | install docs | 17 June 2014, 21:43:24 UTC |
| 8b18060 | fenderglass | 17 June 2014, 21:30:58 UTC | changed exec name | 17 June 2014, 21:30:58 UTC |
| 3e09bf4 | fenderglass | 16 June 2014, 16:51:17 UTC | small fixes | 16 June 2014, 16:51:17 UTC |
| de4c0c0 | fenderglass | 02 June 2014, 13:36:38 UTC | scripts renamed | 02 June 2014, 13:36:38 UTC |
| b7d76f8 | fenderglass | 02 June 2014, 13:22:44 UTC | synteny blocks with coordinates | 02 June 2014, 13:22:44 UTC |
| b65f81b | fenderglass | 31 May 2014, 17:46:03 UTC | minor usage fix | 31 May 2014, 17:46:03 UTC |
| 9eada68 | fenderglass | 31 May 2014, 17:36:04 UTC | few fixes | 31 May 2014, 17:36:04 UTC |
| 4b163c5 | fenderglass | 30 May 2014, 21:47:05 UTC | fixed ecoli recipe | 30 May 2014, 21:47:05 UTC |
| ef9d49d | fenderglass | 28 May 2014, 20:40:13 UTC | site name | 28 May 2014, 20:40:13 UTC |
| 1fec816 | fenderglass | 28 May 2014, 12:38:26 UTC | documentation updated | 28 May 2014, 12:38:26 UTC |
| 821cb4e | fenderglass | 28 May 2014, 10:30:37 UTC | fix for str -> bool casting | 28 May 2014, 10:30:37 UTC |
| c1cf33b | fenderglass | 27 May 2014, 17:30:11 UTC | new recipe format | 27 May 2014, 17:30:11 UTC |
| e0e85ea | fenderglass | 27 May 2014, 15:42:46 UTC | small fixes in debug report | 27 May 2014, 15:42:46 UTC |
| eab6cb6 | fenderglass | 26 May 2014, 10:00:20 UTC | license added, small fixes | 26 May 2014, 10:00:20 UTC |
| 2c286df | fenderglass | 25 May 2014, 09:01:35 UTC | updated cholerae alignment | 25 May 2014, 09:01:35 UTC |
| 098e67b | fenderglass | 24 May 2014, 20:34:15 UTC | fixed bug with chr names containing dots | 24 May 2014, 20:34:15 UTC |
| 81c4077 | fenderglass | 24 May 2014, 10:51:06 UTC | Merge branch 'devel' of github.com:fenderglass/Ragout into devel | 24 May 2014, 10:51:06 UTC |
| 0db0909 | fenderglass | 24 May 2014, 10:49:41 UTC | fixed debug statistics | 24 May 2014, 10:49:41 UTC |
| 8910a6f | AvdeevPavel | 23 May 2014, 21:27:25 UTC | My fix debug report and add my_has_path function. Maybe modificate to return len path. | 23 May 2014, 21:27:25 UTC |
| c7cf686 | fenderglass | 23 May 2014, 20:36:19 UTC | infinity edges to correctly ork with chromosome ends | 23 May 2014, 20:36:19 UTC |
| 366f95a | fenderglass | 21 May 2014, 08:12:16 UTC | scripts updated | 21 May 2014, 08:12:16 UTC |
| dc47ed0 | AvdeevPavel | 20 May 2014, 20:03:51 UTC | Add inversion scrypt | 20 May 2014, 20:03:51 UTC |
| 46ac790 | fenderglass | 19 May 2014, 22:46:54 UTC | manuals updated | 19 May 2014, 22:46:54 UTC |
| 59592d4 | fenderglass | 19 May 2014, 14:08:17 UTC | REFS removed from config | 19 May 2014, 14:08:17 UTC |
| 0805c25 | fenderglass | 19 May 2014, 11:57:22 UTC | only maximum overlaps | 19 May 2014, 11:57:22 UTC |
| 8e21fdb | fenderglass | 17 May 2014, 22:12:25 UTC | oups | 17 May 2014, 22:12:25 UTC |
| 0201cd2 | fenderglass | 17 May 2014, 22:03:12 UTC | faster merging | 17 May 2014, 22:03:12 UTC |
| a0406aa | fenderglass | 17 May 2014, 21:25:32 UTC | Merge with pavel_devel | 17 May 2014, 21:25:32 UTC |
| 682e0c3 | fenderglass | 17 May 2014, 21:13:36 UTC | examples updated | 17 May 2014, 21:13:36 UTC |
| 87591fa | fenderglass | 17 May 2014, 15:24:23 UTC | maf synteny backend | 17 May 2014, 15:24:23 UTC |
| 130f0e6 | fenderglass | 17 May 2014, 13:41:10 UTC | Dima's FM-index incorporated | 17 May 2014, 13:41:10 UTC |
| 4d6ff67 | AvdeevPavel | 16 May 2014, 20:15:26 UTC | Add my_all_simple_path function | 16 May 2014, 20:15:26 UTC |
| b81c52b | fenderglass | 16 May 2014, 16:58:08 UTC | new iterative version of m2s + new recipe format | 16 May 2014, 16:58:08 UTC |
| 5eeb464 | fenderglass | 15 May 2014, 13:09:00 UTC | guessing hidden edges | 15 May 2014, 13:09:00 UTC |
| 041ca77 | fenderglass | 14 May 2014, 15:23:53 UTC | small statistics improvement | 14 May 2014, 15:23:53 UTC |
| c7960ed | fenderglass | 14 May 2014, 11:23:09 UTC | breakpoint graph partitoning hs slightly changed | 14 May 2014, 11:23:09 UTC |
| 5046f8e | fenderglass | 14 May 2014, 09:56:13 UTC | manual slightly improved | 14 May 2014, 09:56:13 UTC |
| eba64ef | fenderglass | 13 May 2014, 13:30:14 UTC | small fix | 13 May 2014, 13:30:14 UTC |
| efed1df | fenderglass | 13 May 2014, 13:18:57 UTC | some statistics | 13 May 2014, 13:18:57 UTC |
| 2ff6eec | kolmogorov | 13 May 2014, 12:07:50 UTC | parser improved | 13 May 2014, 12:07:50 UTC |
| d68a0e0 | kolmogorov | 13 May 2014, 09:20:21 UTC | fatser fasta | 13 May 2014, 09:20:21 UTC |
| 0f7e508 | fenderglass | 13 May 2014, 08:57:50 UTC | some logging | 13 May 2014, 08:57:50 UTC |
| 5a9ef8f | fenderglass | 12 May 2014, 11:13:56 UTC | phylogeny checking before run | 12 May 2014, 11:13:56 UTC |
| 01de1ff | fenderglass | 12 May 2014, 09:24:02 UTC | config is now called recipe | 12 May 2014, 09:24:02 UTC |
| 3be102e | AvdeevPavel | 08 May 2014, 20:13:12 UTC | afte rmerge with good version | 08 May 2014, 20:13:12 UTC |
| d5d1f2c | AvdeevPavel | 08 May 2014, 20:01:16 UTC | experiment version with buldges | 08 May 2014, 20:01:16 UTC |
| 716081e | fenderglass | 08 May 2014, 13:57:17 UTC | new permutations naming convention: genome.chomosome | 08 May 2014, 13:57:17 UTC |
| 34dbfe1 | fenderglass | 07 May 2014, 16:15:26 UTC | executable name changed | 07 May 2014, 16:15:26 UTC |
| 83507dc | fenderglass | 07 May 2014, 12:28:12 UTC | small change | 07 May 2014, 12:28:12 UTC |
| 1db8c46 | fenderglass | 07 May 2014, 11:41:52 UTC | installation script without wget | 07 May 2014, 11:41:52 UTC |
| 458e299 | fenderglass | 04 May 2014, 17:39:58 UTC | fixed bug + debug-report noew works with assembly graph | 04 May 2014, 17:39:58 UTC |
| dbbae63 | fenderglass | 04 May 2014, 17:14:09 UTC | debrujn graph changed to overlap | 04 May 2014, 17:14:09 UTC |
| 219b1f7 | fenderglass | 01 May 2014, 10:02:21 UTC | debug-report outputs edges from assembly graph | 01 May 2014, 10:02:21 UTC |
| fdd51a3 | AvdeevPavel | 29 April 2014, 13:28:34 UTC | Add new breakpoint graph output | 29 April 2014, 13:28:34 UTC |
| c0ff991 | fenderglass | 26 April 2014, 15:48:55 UTC | guessing kmer size | 26 April 2014, 15:48:55 UTC |
| 4b42dde | fenderglass | 26 April 2014, 05:29:56 UTC | instal | 26 April 2014, 05:29:56 UTC |
| c88cc53 | fenderglass | 26 April 2014, 05:18:40 UTC | docs updated | 26 April 2014, 05:18:40 UTC |
| b9c0c95 | fenderglass | 17 April 2014, 12:48:24 UTC | oups | 17 April 2014, 12:48:24 UTC |
| fb0a2ea | fenderglass | 17 April 2014, 12:47:54 UTC | cross-ilnks | 17 April 2014, 12:47:54 UTC |
| 6e2322e | fenderglass | 17 April 2014, 11:45:31 UTC | added link to install-sibelia.py | 17 April 2014, 11:45:31 UTC |
| 78d31da | fenderglass | 17 April 2014, 11:35:23 UTC | uploading to PyPI | 17 April 2014, 11:35:23 UTC |
| 89136a4 | fenderglass | 17 April 2014, 09:34:17 UTC | added setuptools bootstrap, installation script improved | 17 April 2014, 09:34:17 UTC |
| fbf60af | fenderglass | 16 April 2014, 15:20:14 UTC | oups | 16 April 2014, 15:20:14 UTC |
| 0feea83 | fenderglass | 16 April 2014, 15:18:29 UTC | compilation under gcc46 | 16 April 2014, 15:18:29 UTC |
| 4a5248c | fenderglass | 16 April 2014, 12:39:29 UTC | some fixes | 16 April 2014, 12:39:29 UTC |
| 2ae2282 | fenderglass | 15 April 2014, 15:09:40 UTC | v0.2b | 15 April 2014, 15:09:40 UTC |
| 15e9dbf | fenderglass | 15 April 2014, 14:18:41 UTC | removed deprecated code | 15 April 2014, 14:18:41 UTC |
| 0672c97 | fenderglass | 15 April 2014, 12:18:59 UTC | inplace usage option | 15 April 2014, 12:18:59 UTC |
| 368a7d8 | fenderglass | 15 April 2014, 10:49:28 UTC | package fix | 15 April 2014, 10:49:28 UTC |
| fc81a29 | fenderglass | 14 April 2014, 20:38:07 UTC | python package | 14 April 2014, 20:38:07 UTC |
| fe7d04c | fenderglass | 14 April 2014, 17:10:42 UTC | c++ extensions catch Ctr-C; an attemt to create setup script | 14 April 2014, 17:10:42 UTC |
