swh:1:snp:0c004a03453a29b80f921a24433f7e780b9ceb53
Tip revision: bcd9d807055b490961edbebb49afb0f967249245 authored by Alexey Sergushichev on 13 May 2020, 11:00:43 UTC
Merge branch 'master' of git.bioconductor.org:packages/phantasus
Merge branch 'master' of git.bioconductor.org:packages/phantasus
Tip revision: bcd9d80
collapseDataset.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/collapseDataset.R
\name{collapseDataset}
\alias{collapseDataset}
\title{Collapse dataset}
\usage{
collapseDataset(
es,
isRows = TRUE,
selectOne = FALSE,
fn,
fields,
removeEmpty = TRUE
)
}
\arguments{
\item{es}{Expression set}
\item{isRows}{Work with rows. False if columns (default True - row mode)}
\item{selectOne}{select best match or merge duplicates}
\item{fn}{select/merge function}
\item{fields}{fields to unique on}
\item{removeEmpty}{remove unannotated genes}
}
\value{
Nothing. Collapsed dataset will be assigned to es in environment
}
\description{
\code{collapseDataset} performs a collapse action on expression set
}
\examples{
\dontrun{
es <- getGSE('GSE53986')[[1]]
collapseDataset(es, isRows = TRUE, selectOne = TRUE,
fn = mean, fields = c('Gene ID', 'Gene symbol'))
}
}