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https://github.com/ctlab/phantasus
21 July 2021, 18:39:27 UTC
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Revision Author Date Message Commit Date
f40fb80 Vladislav Kamenev 08 October 2018, 14:29:10 UTC Update JS. Export dataset to R 08 October 2018, 14:29:10 UTC
7bd6668 Vladislav Kamenev 08 October 2018, 14:23:26 UTC Export dataset history: finale 08 October 2018, 14:23:26 UTC
5d312a6 Vladislav Kamenev 08 October 2018, 13:22:27 UTC Export WIP: RDA 08 October 2018, 13:22:27 UTC
2f2045e Vladislav Kamenev 03 October 2018, 16:21:44 UTC Export WIP: deparse 03 October 2018, 16:21:44 UTC
138575a Vladislav Kamenev 02 October 2018, 14:13:01 UTC Complex arguments 02 October 2018, 14:13:01 UTC
44d9c73 Vladislav Kamenev 28 September 2018, 17:05:04 UTC JS updated. Export tool 28 September 2018, 17:05:04 UTC
ddfede5 Vladislav Kamenev 28 September 2018, 17:03:59 UTC exportDatasetHistory WIP 28 September 2018, 17:03:59 UTC
05cb2ad Vladislav Kamenev 17 September 2018, 14:55:56 UTC Update JS. Annotation dataset improvement 17 September 2018, 14:55:56 UTC
7679418 Vladislav Kamenev 17 September 2018, 13:05:51 UTC Collapse dataset fixes 17 September 2018, 13:27:22 UTC
be43626 Vladislav Kamenev 17 September 2018, 11:13:29 UTC Collapse dataset working candidate 17 September 2018, 11:13:29 UTC
deac377 petrovich 13 September 2018, 02:43:13 UTC CR collapseDataset 13 September 2018, 02:51:47 UTC
94e82b8 Vladislav Kamenev 12 September 2018, 12:45:32 UTC Removed junk 12 September 2018, 12:45:32 UTC
1993293 Vladislav Kamenev 12 September 2018, 12:39:01 UTC collapseDataset + tests implemented 12 September 2018, 12:39:01 UTC
f7a87c5 Alexey Sergushichev 11 September 2018, 15:30:01 UTC fixes read.gct missing last row/column annotations 11 September 2018, 15:30:01 UTC
1366c31 Alexey Sergushichev 11 September 2018, 14:58:16 UTC Merge branch 'develop' of github.com:ctlab/phantasus into develop 11 September 2018, 14:58:16 UTC
e93cb86 Alexey Sergushichev 11 September 2018, 14:57:51 UTC Adding quiet option for servePhantasus 11 September 2018, 14:57:51 UTC
cc1ee9d Vladislav Kamenev 10 September 2018, 16:43:35 UTC Collapse candidate 11 September 2018, 14:02:51 UTC
f0693d9 Vladislav Kamenev 10 September 2018, 12:24:36 UTC Update JS. New tutorial 10 September 2018, 12:24:36 UTC
27fbda8 Vladislav Kamenev 08 September 2018, 23:34:46 UTC Update tutorial 08 September 2018, 23:34:46 UTC
06931f9 petrovich 06 September 2018, 23:33:28 UTC Update JS. TCGA datasets 06 September 2018, 23:33:28 UTC
db005e4 Vladislav Kamenev 06 September 2018, 09:14:16 UTC Update JS 06 September 2018, 09:14:16 UTC
2c001b6 Vladislav Kamenev 03 September 2018, 14:04:01 UTC UpdateJS. Rename column 03 September 2018, 14:04:01 UTC
a3a0c44 Vladislav Kamenev 03 September 2018, 14:03:29 UTC Rename column implemented 03 September 2018, 14:03:29 UTC
4f0e68f Vladislav Kamenev 03 September 2018, 10:39:01 UTC Update JS 03 September 2018, 10:39:01 UTC
211f569 Vladislav Kamenev 03 September 2018, 10:38:19 UTC Annotation name implemented 03 September 2018, 10:38:19 UTC
c4ae3a7 petrovich 02 September 2018, 21:10:00 UTC Update JS 02 September 2018, 21:10:00 UTC
d79b9ae petrovich 02 September 2018, 21:08:51 UTC Implemented onePlusLog2 operation in adjustDataset 02 September 2018, 21:08:51 UTC
7ccb9f0 petrovich 31 August 2018, 01:43:13 UTC Update JS. Adjust mirroring disabled in datasets without session 31 August 2018, 01:43:13 UTC
93dc3bd petrovich 31 August 2018, 01:30:28 UTC Update JS. Adjust mirroring final 31 August 2018, 01:30:28 UTC
95ed673 petrovich 30 August 2018, 23:03:32 UTC Fixed and added test 30 August 2018, 23:03:32 UTC
b908239 petrovich 30 August 2018, 06:18:50 UTC Filter pData fix. Vector length conflict 30 August 2018, 06:18:50 UTC
9277ad4 petrovich 30 August 2018, 06:06:25 UTC Update JS. Adjust mirroring implemented 30 August 2018, 06:06:25 UTC
253a622 petrovich 30 August 2018, 06:04:26 UTC Adjust mirroring fix. Logarithm on negatives 30 August 2018, 06:04:26 UTC
26733f8 petrovich 30 August 2018, 03:44:23 UTC Fix phenoData filter 30 August 2018, 03:44:23 UTC
2172598 petrovich 26 August 2018, 18:10:06 UTC Adjust mirring 29 August 2018, 02:19:37 UTC
374e842 petrovich 21 August 2018, 13:45:55 UTC Update JS. Fix PhantomJS testing 21 August 2018, 13:45:55 UTC
f85260d petrovich 21 August 2018, 13:15:52 UTC Update JS. Fix PhantomJS test 21 August 2018, 13:15:52 UTC
540453c Vladislav Kamenev 20 August 2018, 16:02:19 UTC Merge branch 'develop' of https://github.com/ctlab/phantasus into develop 20 August 2018, 16:02:19 UTC
6f27642 Vladislav Kamenev 20 August 2018, 15:59:48 UTC New probe. New debug mode 20 August 2018, 15:59:48 UTC
b0d09e9 Vladislav Kamenev 13 August 2018, 18:00:29 UTC Update_static versioning FIX 13 August 2018, 19:01:41 UTC
102bcd1 Vladislav Kamenev 13 August 2018, 16:40:39 UTC Update JS. Adjust tool 13 August 2018, 16:40:39 UTC
d0d5b4d Vladislav Kamenev 13 August 2018, 16:23:49 UTC Fixed update_static.js versioning 13 August 2018, 16:23:49 UTC
c28b816 Vladislav Kamenev 13 August 2018, 16:17:45 UTC Update JS 13 August 2018, 16:17:45 UTC
28791c5 Vladislav Kamenev 13 August 2018, 16:14:13 UTC Calculated annotation full mirror implemented 13 August 2018, 16:14:13 UTC
6298a56 Vladislav Kamenev 13 August 2018, 14:20:47 UTC Another JS version report 13 August 2018, 14:20:47 UTC
94ca5d1 Vladislav Kamenev 13 August 2018, 13:07:10 UTC Calculated annotation mirror implemented 13 August 2018, 13:07:10 UTC
893b1c8 Vladislav Kamenev 13 August 2018, 09:40:50 UTC Travis JS versioning implemented 13 August 2018, 12:50:05 UTC
bc3f225 Alexey Sergushichev 07 August 2018, 12:34:59 UTC update static 07 August 2018, 12:34:59 UTC
9f7b6d4 Vladislav Kamenev 07 August 2018, 09:41:33 UTC Merge pull request #85 from ctlab/develop Develop 07 August 2018, 09:41:33 UTC
39a8be5 Vladislav Kamenev 06 August 2018, 15:13:35 UTC Update JS. PCA Plot performance fix 06 August 2018, 15:13:35 UTC
d161af9 Vladislav Kamenev 06 August 2018, 14:01:52 UTC Update JS. Filters with empty values 06 August 2018, 14:01:52 UTC
bc6f335 Vladislav Kamenev 06 August 2018, 12:16:59 UTC Typo in tutorial 06 August 2018, 12:16:59 UTC
a19fffe Vladislav Kamenev 06 August 2018, 11:11:02 UTC JS update. Filter hotfix 06 August 2018, 11:11:02 UTC
fd6158b Vladislav Kamenev 06 August 2018, 10:21:16 UTC Version bump to 1.1.3 in DESCRIPTION 06 August 2018, 10:21:16 UTC
ebfcedb Vladislav Kamenev 06 August 2018, 09:52:58 UTC Update JS. GSEA tool fixed 06 August 2018, 09:52:58 UTC
e41578d Vladislav Kamenev 03 August 2018, 05:15:55 UTC One docker for all 03 August 2018, 12:50:13 UTC
c0fa1e7 Alexey Sergushichev 01 August 2018, 20:31:01 UTC Preserving annotation order in GSEA heatmap 01 August 2018, 20:31:01 UTC
5006318 Alexey Sergushichev 01 August 2018, 18:18:39 UTC Fixed package check warnings 01 August 2018, 18:18:39 UTC
2f41a12 Alexey Sergushichev 01 August 2018, 17:25:49 UTC Updated JS for GSEA with heatmap 01 August 2018, 17:25:49 UTC
6a80938 Alexey Sergushichev 01 August 2018, 15:46:46 UTC gsea heatmap wip 01 August 2018, 15:46:46 UTC
4e1551c Vladislav Kamenev 31 July 2018, 16:11:10 UTC Update JS. New filters. Removed DevAPI 31 July 2018, 16:11:10 UTC
ae30336 Vladislav Kamenev 31 July 2018, 16:09:34 UTC Fixed man for subsetES function 31 July 2018, 16:09:34 UTC
590670e Vladislav Kamenev 31 July 2018, 11:06:16 UTC Update JS. Bootstrap-select size limited 31 July 2018, 11:06:16 UTC
cc5eb58 Vladislav Kamenev 31 July 2018, 10:30:22 UTC Fixed NA replacing in kmeans, pcaplot 31 July 2018, 10:30:22 UTC
0ba714f Vladislav Kamenev 31 July 2018, 10:06:58 UTC Update JS. Another fix for session inheritance 31 July 2018, 10:06:58 UTC
e6ce451 Vladislav Kamenev 31 July 2018, 10:04:24 UTC Added NA test to pcaPlot 31 July 2018, 10:04:24 UTC
c456f79 Vladislav Kamenev 31 July 2018, 09:51:51 UTC Revert "slight optimization for k-means and pca" This reverts commit 2c053b597041bf04e31de4e71dd22f31f0ec6b52. 31 July 2018, 09:51:51 UTC
b573534 Alexey Sergushichev 30 July 2018, 16:13:06 UTC gseaPlot fix after subset 30 July 2018, 16:13:06 UTC
2c053b5 Alexey Sergushichev 30 July 2018, 15:27:39 UTC slight optimization for k-means and pca 30 July 2018, 15:27:39 UTC
263ba68 Vladislav Kamenev 30 July 2018, 14:02:43 UTC Update JS. Sweep test implemented 30 July 2018, 14:02:43 UTC
af8e0ab Vladislav Kamenev 30 July 2018, 13:09:06 UTC Miscommit lower-case file 30 July 2018, 13:09:06 UTC
f494947 Vladislav Kamenev 30 July 2018, 12:52:05 UTC New heatmap revamped. Creating session by subsetting ES 30 July 2018, 12:52:05 UTC
6e64657 Vladislav Kamenev 30 July 2018, 11:54:39 UTC Update JS. Adjust test fix 30 July 2018, 11:54:39 UTC
bdd48bc Vladislav Kamenev 30 July 2018, 11:24:26 UTC Update JS. Sweep tool 30 July 2018, 11:24:26 UTC
78c6505 Alexey Sergushichev 27 July 2018, 14:27:58 UTC setting oepncpu master home 27 July 2018, 14:27:58 UTC
b897a79 petrovich 25 July 2018, 07:59:14 UTC Update JS. New GSEA. Some fixes for SlicedDataset ESSessions 25 July 2018, 07:59:14 UTC
a46bc6c Vladislav Kamenev 20 July 2018, 01:43:40 UTC Latest docker -> develop docker 20 July 2018, 11:15:27 UTC
9954ebf Vladislav Kamenev 19 July 2018, 23:53:46 UTC Merge pull request #84 from ctlab/kamenv Kamenv to develop 19 July 2018, 23:53:46 UTC
c7f158d petrovich 19 July 2018, 21:23:57 UTC Update JS. Rebase fixed 19 July 2018, 23:02:52 UTC
0b99be8 petrovich 19 July 2018, 14:16:34 UTC Rebased on master with Vertical GSEA R fixes 19 July 2018, 21:03:48 UTC
5621e8a Alexey Sergushichev 19 July 2018, 06:49:38 UTC updated js 19 July 2018, 21:03:48 UTC
0306436 petrovich 01 July 2018, 05:13:24 UTC Reworked limma. Reworked k-means. Reworked gseaPlot. Reworked shinyGAM. Reworked PCAplot. Fixed mans. Probe dataset implemented 19 July 2018, 21:03:48 UTC
d144ef5 Alexey Sergushichev 19 July 2018, 16:08:31 UTC Merge pull request #83 from ctlab/vertical-gsea-hotfix Vertical GSEA in R 19 July 2018, 16:08:31 UTC
cb73613 petrovich 19 July 2018, 13:41:12 UTC Vertical GSEA in R 19 July 2018, 13:54:09 UTC
343aff8 Alexey Sergushichev 10 July 2018, 13:03:13 UTC Vertical GSEA plot 10 July 2018, 13:03:13 UTC
9d243ab Alexey Sergushichev 09 July 2018, 14:31:19 UTC pushed js changes to phantasus.js 09 July 2018, 14:31:19 UTC
74cabe3 Alexey Sergushichev 07 July 2018, 17:25:33 UTC 240 seconds timeout for phantomjs 07 July 2018, 17:25:33 UTC
fea33c8 Alexey Sergushichev 07 July 2018, 17:05:56 UTC 240 seconds for geo_reader_test 07 July 2018, 17:05:56 UTC
e658f83 Alexey Sergushichev 07 July 2018, 16:52:44 UTC timeout of 240 seconds 07 July 2018, 16:52:44 UTC
8f2cc74 Alexey Sergushichev 07 July 2018, 15:45:46 UTC changed timeout in test 07 July 2018, 15:45:46 UTC
eec4329 Alexey Sergushichev 07 July 2018, 12:05:59 UTC More robust loading from ARCHS4 (no need to provide GPLs) 07 July 2018, 12:05:59 UTC
7860af3 Alexey Sergushichev 02 June 2018, 09:13:22 UTC JS: fixed double createES for TCGA data 02 June 2018, 09:13:22 UTC
df7331d Alexey Sergushichev 01 June 2018, 21:42:05 UTC Fixing docker - 3 01 June 2018, 21:42:05 UTC
17d3930 Alexey Sergushichev 26 May 2018, 17:50:43 UTC fixing dockerfile 2 26 May 2018, 17:50:43 UTC
7279392 Alexey Sergushichev 26 May 2018, 17:21:56 UTC Fixing dockerfile 26 May 2018, 17:21:56 UTC
e2cc211 Alexey Sergushichev 26 May 2018, 16:54:29 UTC missed R-3.5 dependency 26 May 2018, 16:54:29 UTC
5bbbc4a Alexey Sergushichev 26 May 2018, 16:53:09 UTC Merge branch 'master' of github.com:ctlab/phantasus 26 May 2018, 16:53:09 UTC
de106a7 Alexey Sergushichev 26 May 2018, 16:52:13 UTC Switch to r-3.5 and protobuf-3.5 in docker 26 May 2018, 16:52:13 UTC
339174c Alexey Sergushichev 24 May 2018, 20:18:13 UTC Switch back to r-release in appveyor 24 May 2018, 20:18:13 UTC
ee7962c Alexey Sergushichev 24 May 2018, 19:58:27 UTC forcing libcurl and better handling for downloading errors 24 May 2018, 19:58:27 UTC
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