swh:1:snp:0da231f3ffdb3226650880f1b61d5d5cdcbd749b
Tip revision: 7618ac8798e2aefc509529f07af9d2836b96a1be authored by Paul Hoffman on 12 June 2018, 15:33:31 UTC
Update cran-comments
Update cran-comments
Tip revision: 7618ac8
travis_setup.sh
#!/bin/bash
if [ "$TRAVIS_OS_NAME" != "osx" ]; then #
cd ..
wget "$HDF5_RELEASE_URL/hdf5-${HDF5_VERSION%.*}/hdf5-$HDF5_VERSION/src/hdf5-$HDF5_VERSION.tar.gz"
tar -xzf "hdf5-$HDF5_VERSION.tar.gz"
cd "hdf5-$HDF5_VERSION"
./configure --prefix=/usr/local
sudo make install
cd ../seurat
fi
# install python
if [[ $TRAVIS_OS_NAME == "linux" ]]; then
wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh -O miniconda.sh
elif [[ $TRAVIS_OS_NAME == "osx" ]]; then
wget https://repo.continuum.io/miniconda/Miniconda2-latest-MacOSX-x86_64.sh -O miniconda.sh
fi
bash miniconda.sh -b -p $HOME/miniconda
export PATH="$HOME/miniconda/bin:$PATH"
export RETICULATE_PYTHON="$HOME/miniconda/bin/python"
hash -r
conda config --set always_yes yes --set changeps1 no
conda update -q conda
conda info -a
pip install --upgrade pip
pip install phate