swh:1:snp:0da231f3ffdb3226650880f1b61d5d5cdcbd749b
Tip revision: 656fc8b562d53e5d0cedda9e09d9dda81e8c00e9 authored by David Collins on 29 February 2024, 13:44:33 UTC
Merge pull request #8550 from satijalab/develop
Merge pull request #8550 from satijalab/develop
Tip revision: 656fc8b
ISpatialDimPlot.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/visualization.R
\name{ISpatialDimPlot}
\alias{ISpatialDimPlot}
\title{Visualize clusters spatially and interactively}
\usage{
ISpatialDimPlot(object, image = NULL, group.by = NULL, alpha = c(0.3, 1))
}
\arguments{
\item{object}{A Seurat object}
\item{image}{Name of the image to use in the plot}
\item{group.by}{Name of meta.data column to group the data by}
\item{alpha}{Controls opacity of spots. Provide as a vector specifying the
min and max for SpatialFeaturePlot. For SpatialDimPlot, provide a single
alpha value for each plot.}
}
\value{
Returns final plot as a ggplot object
}
\description{
Visualize clusters spatially and interactively
}
\concept{spatial}
\concept{visualization}