swh:1:snp:0da231f3ffdb3226650880f1b61d5d5cdcbd749b
Tip revision: 656fc8b562d53e5d0cedda9e09d9dda81e8c00e9 authored by David Collins on 29 February 2024, 13:44:33 UTC
Merge pull request #8550 from satijalab/develop
Merge pull request #8550 from satijalab/develop
Tip revision: 656fc8b
IntegrateLayers.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/integration5.R
\name{IntegrateLayers}
\alias{IntegrateLayers}
\title{Integrate Layers}
\usage{
IntegrateLayers(
object,
method,
orig.reduction = "pca",
assay = NULL,
features = NULL,
layers = NULL,
scale.layer = "scale.data",
...
)
}
\arguments{
\item{object}{A \code{\link[SeuratObject]{Seurat}} object}
\item{method}{Integration method function}
\item{orig.reduction}{Name of dimensional reduction for correction}
\item{assay}{Name of assay for integration}
\item{features}{A vector of features to use for integration}
\item{layers}{Names of normalized layers in \code{assay}}
\item{scale.layer}{Name(s) of scaled layer(s) in \code{assay}}
\item{...}{Arguments passed on to \code{method}}
}
\value{
\code{object} with integration data added to it
}
\description{
Integrate Layers
}
\section{Integration Method Functions}{
The following integration method functions are available:
\Sexpr[stage=render,results=rd]{Seurat:::.rd_methods("integration")}
}
\seealso{
\link[Seurat:writing-integration]{Writing integration method functions}
}
\concept{integration}