swh:1:snp:0da231f3ffdb3226650880f1b61d5d5cdcbd749b
Tip revision: 656fc8b562d53e5d0cedda9e09d9dda81e8c00e9 authored by David Collins on 29 February 2024, 13:44:33 UTC
Merge pull request #8550 from satijalab/develop
Merge pull request #8550 from satijalab/develop
Tip revision: 656fc8b
IntegrationData-class.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/objects.R
\docType{class}
\name{IntegrationData-class}
\alias{IntegrationData-class}
\alias{IntegrationData}
\title{The IntegrationData Class}
\description{
The IntegrationData object is an intermediate storage container used internally throughout the
integration procedure to hold bits of data that are useful downstream.
}
\section{Slots}{
\describe{
\item{\code{neighbors}}{List of neighborhood information for cells (outputs of \code{RANN::nn2})}
\item{\code{weights}}{Anchor weight matrix}
\item{\code{integration.matrix}}{Integration matrix}
\item{\code{anchors}}{Anchor matrix}
\item{\code{offsets}}{The offsets used to enable cell look up in downstream functions}
\item{\code{objects.ncell}}{Number of cells in each object in the object.list}
\item{\code{sample.tree}}{Sample tree used for ordering multi-dataset integration}
}}
\concept{objects}