swh:1:snp:0da231f3ffdb3226650880f1b61d5d5cdcbd749b
Tip revision: 41d19a8a55350bff444340d6ae7d7e03417d4173 authored by Gesmira on 20 November 2023, 15:50:22 UTC
Merge remote-tracking branch 'private/release/5.0.1'
Merge remote-tracking branch 'private/release/5.0.1'
Tip revision: 41d19a8
integration.h
#ifndef CORRECT_EXPRESSION
#define CORRECT_EXPRESSION
#include <RcppEigen.h>
#include <unordered_map>
using namespace Rcpp;
//----------------------------------------------------
Eigen::SparseMatrix<double> FindWeightsC(
NumericVector cells2,
Eigen::MatrixXd distances,
std::vector<std::string> anchor_cells2,
std::vector<std::string> integration_matrix_rownames,
Eigen::MatrixXd cell_index,
Eigen::VectorXd anchor_score,
double min_dist,
double sd,
bool display_progress
);
Eigen::SparseMatrix<double> IntegrateDataC(
Eigen::SparseMatrix<double> integration_matrix,
Eigen::SparseMatrix<double> weights,
Eigen::SparseMatrix<double> expression_cells2
);
std::vector<double> ScoreHelper(
Eigen::SparseMatrix<double> snn,
Eigen::MatrixXd query_pca,
Eigen::MatrixXd query_dists,
Eigen::MatrixXd corrected_nns,
int k_snn,
bool subtract_first_nn,
bool display_progress
);
//----------------------------------------------------
#endif//CORRECT_EXPRESSION