| 94343c4 | satijalab | 02 March 2020, 20:06:30 UTC | Merge pull request #2648 from satijalab/develop Seurat v3.1.4 | 02 March 2020, 20:06:30 UTC |
| dc0bd16 | Paul Hoffman | 02 March 2020, 17:05:20 UTC | Merge branch 'master' into develop | 02 March 2020, 17:05:20 UTC |
| 545c631 | Paul Hoffman | 02 March 2020, 17:02:49 UTC | Add exact install instructions for SDMTools | 02 March 2020, 17:02:49 UTC |
| 9648dd0 | Paul Hoffman | 21 February 2020, 22:31:18 UTC | Merge pull request #261 from satijalab/release/3.1.4 Prep for CRAN release of 3.1.4 | 21 February 2020, 22:31:18 UTC |
| 826bab0 | Paul Hoffman | 21 February 2020, 21:34:34 UTC | Update CRAN comments | 21 February 2020, 21:34:34 UTC |
| 556ca65 | Andrew Butler | 21 February 2020, 21:11:06 UTC | update release date | 21 February 2020, 21:11:06 UTC |
| 03fd948 | Andrew Butler | 21 February 2020, 15:40:07 UTC | fix to DimPlot faceting | 21 February 2020, 15:40:07 UTC |
| 5f35b69 | Paul Hoffman | 20 February 2020, 22:17:55 UTC | Fix multi-feature split FeaturePlots | 20 February 2020, 22:17:55 UTC |
| a2f3ff2 | Paul Hoffman | 20 February 2020, 21:16:47 UTC | Fix ylims for blended feature plot key | 20 February 2020, 21:16:47 UTC |
| fac062e | Paul Hoffman | 20 February 2020, 15:49:59 UTC | Fix ncol setting for DimPlot when using split.by | 20 February 2020, 15:49:59 UTC |
| db87d82 | Paul Hoffman | 20 February 2020, 15:35:45 UTC | Restore automatic legend removal with multi-feature Vln- and RidgePlots | 20 February 2020, 15:35:45 UTC |
| af5a9df | Paul Hoffman | 20 February 2020, 15:28:09 UTC | Update CRAN comments | 20 February 2020, 15:28:09 UTC |
| 611cbbe | Paul Hoffman | 20 February 2020, 15:21:23 UTC | Merge branch 'develop' into release/3.1.4 | 20 February 2020, 15:21:23 UTC |
| 31378a5 | Paul Hoffman | 20 February 2020, 15:17:40 UTC | Merge pull request #2620 from mfansler/patch-mf Consistent `FeaturePlot` axis limits | 20 February 2020, 15:17:40 UTC |
| a71bc51 | Andrew Butler | 20 February 2020, 14:45:17 UTC | merge | 20 February 2020, 14:45:17 UTC |
| c208359 | Paul Hoffman | 20 February 2020, 14:31:10 UTC | Bump develop version | 20 February 2020, 14:31:10 UTC |
| d2c052c | Paul Hoffman | 20 February 2020, 14:31:01 UTC | Minor fixes | 20 February 2020, 14:31:01 UTC |
| a49dbc2 | Paul Hoffman | 20 February 2020, 13:59:41 UTC | Merge branch 'develop' of github.com:satijalab/seurat into patch-mf | 20 February 2020, 13:59:41 UTC |
| ff6c015 | Paul Hoffman | 19 February 2020, 20:06:49 UTC | Update style | 19 February 2020, 20:06:49 UTC |
| 8b55a01 | Paul Hoffman | 19 February 2020, 19:58:59 UTC | Merge pull request #260 from satijalab/fix/SCTMerge Fix for multi-sct merges | 19 February 2020, 19:58:59 UTC |
| af4d106 | Paul Hoffman | 19 February 2020, 19:47:40 UTC | Bump develop version | 19 February 2020, 19:47:40 UTC |
| 1c282c3 | Andrew Butler | 18 February 2020, 16:07:59 UTC | update DESCRIPTION, NEWS, README for 3.1.4 | 18 February 2020, 16:07:59 UTC |
| d489b48 | Andrew Butler | 18 February 2020, 15:58:57 UTC | fix for multi-sct merges | 18 February 2020, 15:58:57 UTC |
| 57e90c4 | Mervin Fansler | 14 February 2020, 16:33:04 UTC | retain axis limits | 14 February 2020, 16:33:04 UTC |
| 6828853 | Andrew Butler | 13 February 2020, 20:13:56 UTC | Merge pull request #257 from satijalab/feat/CombineArg Re-add combine parameter for plots | 13 February 2020, 20:13:56 UTC |
| 377ffce | Andrew Butler | 13 February 2020, 20:06:20 UTC | bump develop version | 13 February 2020, 20:06:20 UTC |
| 25f7022 | Paul Hoffman | 13 February 2020, 19:16:48 UTC | Replace deleted code | 13 February 2020, 19:16:48 UTC |
| 099795f | Paul Hoffman | 13 February 2020, 18:41:21 UTC | Readd combine parameter for plots | 13 February 2020, 18:41:21 UTC |
| d7cd637 | Paul Hoffman | 12 February 2020, 17:53:57 UTC | Merge pull request #238 from satijalab/feat/patchwork Replace `CombinePlot` with patchwork | 12 February 2020, 17:53:57 UTC |
| c4440a3 | Paul Hoffman | 12 February 2020, 17:48:10 UTC | Merge branch 'develop' into feat/patchwork | 12 February 2020, 17:48:10 UTC |
| c302bd1 | Andrew Butler | 12 February 2020, 16:03:09 UTC | Merge pull request #2600 from rakarnik/develop Fix unsigned comparison warnings | 12 February 2020, 16:03:09 UTC |
| 483e8ef | Andrew Butler | 12 February 2020, 15:45:41 UTC | bump develop version | 12 February 2020, 15:45:41 UTC |
| e6630b2 | Andrew Butler | 12 February 2020, 15:44:48 UTC | Merge branch 'develop' of github.com:satijalab/seurat into develop | 12 February 2020, 15:44:48 UTC |
| aafadb6 | Paul Hoffman | 11 February 2020, 23:26:02 UTC | Bump develop version | 11 February 2020, 23:26:02 UTC |
| 12d75ed | Paul Hoffman | 11 February 2020, 22:43:15 UTC | Merge branch 'develop' into feat/patchwork | 11 February 2020, 22:43:15 UTC |
| d12ea1a | Paul Hoffman | 11 February 2020, 22:43:01 UTC | Fix missing argument for convenience DimPlots | 11 February 2020, 22:43:01 UTC |
| a718a8d | Paul Hoffman | 11 February 2020, 22:42:40 UTC | devtools::document updated this | 11 February 2020, 22:42:40 UTC |
| 211ce4d | Paul Hoffman | 11 February 2020, 22:41:47 UTC | Merge pull request #256 from satijalab/fix/ggplot3.3.0 [MERGE AFTER 3.1.3] - fix annotation bar for ggplot2 v3.3.0 | 11 February 2020, 22:41:47 UTC |
| 12ed8a0 | Paul Hoffman | 11 February 2020, 22:41:39 UTC | For some reason, there was a merge conflict on this file | 11 February 2020, 22:41:39 UTC |
| c842a5f | Paul Hoffman | 11 February 2020, 22:36:20 UTC | Bump develop version | 11 February 2020, 22:36:20 UTC |
| bea3691 | Paul Hoffman | 11 February 2020, 22:24:41 UTC | Merge branch 'develop' into feat/patchwork | 11 February 2020, 22:24:41 UTC |
| 1ad7f1e | Paul Hoffman | 11 February 2020, 22:23:55 UTC | Merge branch 'develop' into fix/ggplot3.3.0 | 11 February 2020, 22:23:55 UTC |
| 2ddfd0f | Paul Hoffman | 11 February 2020, 22:21:55 UTC | Add comment so we know what's going on when we invariably forget | 11 February 2020, 22:21:55 UTC |
| 87e2454 | Paul Hoffman | 11 February 2020, 21:52:16 UTC | Merge pull request #2605 from satijalab/develop Seurat v3.1.3 | 11 February 2020, 21:52:16 UTC |
| c772da1 | Paul Hoffman | 11 February 2020, 20:18:32 UTC | Fix tests | 11 February 2020, 20:18:32 UTC |
| 830e26f | Rahul Karnik | 10 February 2020, 22:48:29 UTC | Fix unsigned comparison warnings | 10 February 2020, 22:48:29 UTC |
| 14cfc8c | Andrew Butler | 10 February 2020, 15:55:27 UTC | fix annotation bar for ggplot2 v3.3.0 | 10 February 2020, 15:55:44 UTC |
| 0324e13 | Paul Hoffman | 08 February 2020, 22:21:50 UTC | Fix documentation errors | 08 February 2020, 22:21:50 UTC |
| 53e3f4c | Paul Hoffman | 08 February 2020, 04:02:06 UTC | Merge pull request #255 from satijalab/release/3.1.3 Prep for CRAN release of 3.1.3 | 08 February 2020, 04:02:06 UTC |
| de97da4 | Andrew Butler | 07 February 2020, 23:05:36 UTC | add SDMTools to NEWS, typo fix | 07 February 2020, 23:05:36 UTC |
| 7cc3aea | Paul Hoffman | 07 February 2020, 22:52:23 UTC | Update CRAN comments | 07 February 2020, 22:52:23 UTC |
| 277f18e | Paul Hoffman | 07 February 2020, 22:47:46 UTC | Make SDMTools a suggested package instead of an imported one | 07 February 2020, 22:47:46 UTC |
| 0fed831 | Paul Hoffman | 07 February 2020, 19:39:28 UTC | Fix documentation errors | 07 February 2020, 19:39:28 UTC |
| 6fc9820 | Andrew Butler | 07 February 2020, 15:31:46 UTC | there isn't a weighted argument to graph_from_adj_list | 07 February 2020, 15:33:29 UTC |
| f53a1cb | Andrew Butler | 07 February 2020, 15:01:59 UTC | update DESCRIPTION, NEWS, README for CRAN release | 07 February 2020, 15:01:59 UTC |
| e28e4b3 | Paul Hoffman | 06 February 2020, 20:19:12 UTC | Merge branch 'develop' into feat/patchwork | 06 February 2020, 20:19:12 UTC |
| 19e5d48 | Paul Hoffman | 06 February 2020, 20:11:54 UTC | Update docs with note about move to patchwork | 06 February 2020, 20:11:54 UTC |
| 007de78 | Andrew Butler | 06 February 2020, 19:16:30 UTC | doc fixes | 06 February 2020, 19:16:30 UTC |
| ec8746f | Andrew Butler | 06 February 2020, 16:12:32 UTC | use develop image for azure | 06 February 2020, 16:16:38 UTC |
| d4c5140 | Andrew Butler | 06 February 2020, 16:11:48 UTC | Merge branch 'develop' into feat/patchwork | 06 February 2020, 16:11:48 UTC |
| a9c939c | Paul Hoffman | 04 February 2020, 22:59:41 UTC | Merge pull request #2569 from amcdavid/master Link to sctransform methods that populate slots of SCTransform output | 04 February 2020, 22:59:41 UTC |
| 9ea819b | Paul Hoffman | 04 February 2020, 22:38:33 UTC | Style fixes | 04 February 2020, 22:38:33 UTC |
| 5553c76 | Paul Hoffman | 04 February 2020, 22:34:31 UTC | Merge branch 'develop' of github.com:satijalab/seurat | 04 February 2020, 22:34:31 UTC |
| 0d5e5e0 | Andrew Butler | 04 February 2020, 17:07:56 UTC | Merge pull request #253 from satijalab/feat/SCTtransfer_cca sct transfer cca | 04 February 2020, 17:07:56 UTC |
| 693bc8e | Andrew Butler | 04 February 2020, 16:59:22 UTC | bump develop version | 04 February 2020, 16:59:22 UTC |
| 9c8e1d6 | Andrew Butler | 04 February 2020, 16:41:35 UTC | avoid scaling in another LogNorm case for FindTransferAnchors | 04 February 2020, 16:41:35 UTC |
| 9df3ebc | Andrew Butler | 04 February 2020, 15:28:15 UTC | Merge branch 'develop' into feat/SCTtransfer_cca | 04 February 2020, 15:28:15 UTC |
| c9da7c2 | Paul Hoffman | 03 February 2020, 21:40:15 UTC | Merge pull request #250 from satijalab/fix/UnderscoreKeys bug fixes for keys with underscores | 03 February 2020, 21:40:15 UTC |
| 996dcaa | Andrew Butler | 03 February 2020, 21:25:15 UTC | bump develop version | 03 February 2020, 21:25:15 UTC |
| 58c2b14 | yuhanH | 03 February 2020, 18:35:34 UTC | sct transfer cca | 03 February 2020, 18:35:34 UTC |
| 6c854c3 | Paul Hoffman | 03 February 2020, 18:06:56 UTC | Merge branch 'develop' into fix/UnderscoreKeys | 03 February 2020, 18:06:56 UTC |
| 74e4a57 | Paul Hoffman | 03 February 2020, 18:05:41 UTC | Move fix from CreateDimReducObject to UpdateKey | 03 February 2020, 18:05:41 UTC |
| be561fd | Andrew Butler | 03 February 2020, 18:03:47 UTC | merge sync | 03 February 2020, 18:03:47 UTC |
| 0cd79ba | Andrew Butler | 03 February 2020, 17:54:12 UTC | Merge pull request #251 from satijalab/feat/UMAPInputChecks Better input checking for RunUMAP | 03 February 2020, 17:54:12 UTC |
| 2be8a58 | Andrew Butler | 03 February 2020, 17:48:21 UTC | bump develop version | 03 February 2020, 17:48:21 UTC |
| cd360a3 | Paul Hoffman | 03 February 2020, 16:49:28 UTC | Minor style fixes | 03 February 2020, 16:49:28 UTC |
| 549926f | Andrew McDavid | 03 February 2020, 16:14:30 UTC | Add links to sctransform methods that population slots of new object in SCTransform docs | 03 February 2020, 16:14:30 UTC |
| 9727d24 | Andrew Butler | 30 January 2020, 21:57:28 UTC | Better input checking for RunUMAP If fewer features (or reduced dimensions) than the number of UMAP components to compute are passed, stop and display more informative error message. For example, hopefully prevents confusion in cases like RunUMAP(object, dims = 10) | 30 January 2020, 21:57:28 UTC |
| 525798e | Andrew Butler | 30 January 2020, 21:29:57 UTC | bug fixes for keys with underscores When a key name with an underscore in the middle is passed to functions that generate DimReducs (e.g RunUMAP), the key gets truncated at the first underscore. Additionally, if it ends with a number (e.g. key.name = "umap_test2"), this causes bugs as the number at the end can get appended to the dimension number (e.g. dimension 1 becomes dimension 21). | 30 January 2020, 21:29:57 UTC |
| 187dbbf | Andrew Butler | 27 January 2020, 22:04:39 UTC | Merge branch 'develop' into feat/patchwork | 27 January 2020, 22:04:39 UTC |
| 45944a7 | Paul Hoffman | 23 January 2020, 21:55:11 UTC | Merge pull request #2538 from satijalab/fix/Sweep4 Add new Sweep internal function | 23 January 2020, 21:55:11 UTC |
| 950d661 | Andrew Butler | 23 January 2020, 21:30:28 UTC | bump develop version | 23 January 2020, 21:30:28 UTC |
| ea76245 | Andrew Butler | 23 January 2020, 21:29:59 UTC | Merge branch 'develop' into fix/Sweep4 | 23 January 2020, 21:29:59 UTC |
| 2f0bb6a | Paul Hoffman | 23 January 2020, 20:30:54 UTC | Add new Sweep internal function R v4 changes sweep to use captial X instead of lowercase x New wrapper function allows compatability with both R v3 sweep and v4 sweep | 23 January 2020, 20:30:54 UTC |
| c2c5bba | Andrew Butler | 22 January 2020, 19:02:40 UTC | Merge pull request #2440 from chlee-tabin/master Bug-fix of FindClusters Leiden algorithm | 22 January 2020, 19:02:40 UTC |
| 9800c3f | Andrew Butler | 22 January 2020, 17:55:01 UTC | bump develop version | 22 January 2020, 17:55:01 UTC |
| 3bbf89c | Andrew Butler | 22 January 2020, 17:03:12 UTC | Merge branch 'develop' of github.com:satijalab/seurat | 22 January 2020, 17:03:12 UTC |
| dbd5e60 | Paul Hoffman | 17 January 2020, 18:12:32 UTC | Merge pull request #240 from satijalab/fix/win_fast_tsne Add new system-agnostic Which function | 17 January 2020, 18:12:32 UTC |
| 9ea46bb | Andrew Butler | 17 January 2020, 18:00:46 UTC | bump develop version | 17 January 2020, 18:00:46 UTC |
| e9c4172 | Paul Hoffman | 17 January 2020, 17:36:50 UTC | Rename Which to SysExec | 17 January 2020, 17:36:50 UTC |
| 26d6d56 | Paul Hoffman | 17 January 2020, 17:25:14 UTC | Merge branch 'develop' into fix/win_fast_tsne | 17 January 2020, 17:25:14 UTC |
| b12ed36 | Paul Hoffman | 17 January 2020, 17:24:31 UTC | Fixes to Which | 17 January 2020, 17:24:31 UTC |
| 878e3f7 | Andrew Butler | 17 January 2020, 17:23:34 UTC | Merge pull request #246 from satijalab/fix/UpdateMetaData fill nFeature/nCount when converting 2 to 3 | 17 January 2020, 17:23:34 UTC |
| c17a08c | Paul Hoffman | 17 January 2020, 17:12:57 UTC | Bump develop version | 17 January 2020, 17:12:57 UTC |
| 3b89457 | Andrew Butler | 17 January 2020, 17:04:56 UTC | fill nFeature/nCount when converting 2 to 3 | 17 January 2020, 17:04:56 UTC |
| 7213e39 | chlee-tabin | 16 January 2020, 20:01:54 UTC | Merge pull request #1 from TomKellyGenetics/pr Changes to correct passing weights for Leiden | 16 January 2020, 20:01:54 UTC |
| 53f0ea8 | TomKellyGenetics | 16 January 2020, 02:58:50 UTC | add support for passing weight graphs to Leiden | 16 January 2020, 02:58:50 UTC |
| 1551108 | TomKellyGenetics | 16 January 2020, 02:52:46 UTC | Merge branch 'master' of https://github.com/chlee-tabin/seurat into pr | 16 January 2020, 02:52:46 UTC |
| 721a970 | Andrew Butler | 14 January 2020, 15:55:58 UTC | small refactor, make sure adj mat is weighted | 14 January 2020, 15:55:58 UTC |
| 518804f | Paul Hoffman | 10 January 2020, 23:00:07 UTC | Merge pull request #206 from satijalab/feat/Vlnplot_multigroup add multiple group in violin split plot | 10 January 2020, 23:00:07 UTC |
