| a556035 | Paul Hoffman | 19 October 2021, 17:18:24 UTC | Merge pull request #5203 from satijalab/develop Seurat v4.0.5 | 19 October 2021, 17:18:24 UTC |
| 4cba1fc | Paul Hoffman | 19 October 2021, 17:17:31 UTC | Merge branch 'master' into develop | 19 October 2021, 17:17:31 UTC |
| ff867a8 | Paul Hoffman | 19 October 2021, 17:15:04 UTC | Merge pull request #5161 from satijalab/release/4.0.5 Prep for release of 4.0.5 | 19 October 2021, 17:15:04 UTC |
| 90a9d66 | timoast | 07 October 2021, 18:21:01 UTC | Don't use suggested packages | 07 October 2021, 18:21:01 UTC |
| 565b0c8 | Paul Hoffman | 07 October 2021, 18:18:29 UTC | Only run cluster tree examples when ape is installed | 07 October 2021, 18:18:29 UTC |
| 9febef6 | Paul Hoffman | 05 October 2021, 14:41:06 UTC | Merge pull request #600 from satijalab/fix/condtest Add namespace checks to examples using ape | 05 October 2021, 14:41:06 UTC |
| 1f3bccd | Paul Hoffman | 05 October 2021, 14:40:28 UTC | Merge branch 'fix/condtest' of github.com:satijalab/seurat-private into fix/condtest | 05 October 2021, 14:40:28 UTC |
| 455a7c5 | timoast | 05 October 2021, 12:29:47 UTC | Wrap examples in namespace check | 05 October 2021, 12:29:47 UTC |
| 9344667 | Paul Hoffman | 04 October 2021, 17:52:29 UTC | Update CRAN comments | 04 October 2021, 17:52:29 UTC |
| fdbc8b2 | Paul Hoffman | 04 October 2021, 17:43:34 UTC | Update URLs | 04 October 2021, 17:43:34 UTC |
| 17503f1 | Paul Hoffman | 04 October 2021, 17:20:22 UTC | Prepare Seurat v4.0.5 | 04 October 2021, 17:20:22 UTC |
| eb8a9ff | Paul Hoffman | 04 October 2021, 14:32:41 UTC | Merge pull request #5160 from satijalab/fix/condtest Wrap examples/tests that use suggested packages in namespace guards | 04 October 2021, 14:32:41 UTC |
| f9fe181 | Paul Hoffman | 04 October 2021, 14:32:13 UTC | Bump deveop version | 04 October 2021, 14:32:13 UTC |
| b9f9478 | Paul Hoffman | 04 October 2021, 14:10:18 UTC | Wrap examples and tests that use suggested packages in namespace guards Includes: - example for `BuildClusterTree` (uses `ape`) - test for `Read10X_Spatial` (uses `hdf5r`) | 04 October 2021, 14:10:18 UTC |
| 4ffdad4 | Yuhan Hao | 10 September 2021, 18:22:56 UTC | Merge pull request #598 from satijalab/fix/uwot_correlation remove uwot correlation checking | 10 September 2021, 18:22:56 UTC |
| c8db88e | Paul Hoffman | 10 September 2021, 18:21:20 UTC | Update NEWS.md | 10 September 2021, 18:21:20 UTC |
| 616fabf | yuhanH | 10 September 2021, 18:18:44 UTC | bump version, update NEWS | 10 September 2021, 18:18:44 UTC |
| 23c0342 | yuhanH | 10 September 2021, 17:26:14 UTC | remove uwot correlation checking | 10 September 2021, 17:26:14 UTC |
| 1d8cb2b | Paul Hoffman | 03 September 2021, 18:01:09 UTC | Merge pull request #593 from satijalab/doc/sampletree Improve documentation for sample.tree | 03 September 2021, 18:01:09 UTC |
| da9018e | Saket Choudhary | 27 August 2021, 21:01:27 UTC | Merge pull request #596 from satijalab/docs/runspca Add concept to rdoc for RunSPCA | 27 August 2021, 21:01:27 UTC |
| 3c457f1 | timoast | 27 August 2021, 17:53:25 UTC | Merge branch 'develop' into doc/sampletree | 27 August 2021, 17:53:25 UTC |
| 8630876 | Saket Choudhary | 27 August 2021, 17:40:05 UTC | Update NEWS; bump version | 27 August 2021, 17:40:05 UTC |
| 1c1e761 | Tim Stuart | 27 August 2021, 17:32:29 UTC | Add concept tags | 27 August 2021, 17:32:29 UTC |
| ba35630 | Saket Choudhary | 27 August 2021, 17:12:39 UTC | Merge branch 'develop' into docs/runspca | 27 August 2021, 17:12:39 UTC |
| 8af5ad9 | Saket Choudhary | 27 August 2021, 17:09:25 UTC | Add concept to rdoc for RunSPCA | 27 August 2021, 17:09:25 UTC |
| 09af635 | Tim Stuart | 27 August 2021, 17:07:37 UTC | Merge pull request #595 from satijalab/doc/toupper Update to.upper documentation | 27 August 2021, 17:07:37 UTC |
| dc5f4af | timoast | 27 August 2021, 17:07:04 UTC | Update release notes and dev version | 27 August 2021, 17:07:04 UTC |
| 1025edf | timoast | 27 August 2021, 16:50:07 UTC | Update to.upper documentation; #4576 | 27 August 2021, 16:50:07 UTC |
| 13b615c | Paul Hoffman | 27 August 2021, 13:33:47 UTC | Merge pull request #4966 from satijalab/develop Seurat v4.0.4 | 27 August 2021, 13:33:47 UTC |
| c1591c0 | Paul Hoffman | 20 August 2021, 13:11:24 UTC | Merge pull request #592 from satijalab/release/4.0.4 Prep for release of 4.0.4 | 20 August 2021, 13:11:24 UTC |
| 3c1dbf6 | Paul Hoffman | 19 August 2021, 20:15:19 UTC | Update dates | 19 August 2021, 20:15:19 UTC |
| 25000cc | timoast | 13 August 2021, 17:19:54 UTC | Improve documentation for sample.tree | 13 August 2021, 17:19:54 UTC |
| 03879ed | Tim Stuart | 13 August 2021, 16:40:44 UTC | Fix cluster number | 13 August 2021, 16:40:44 UTC |
| 235113a | Andrew Butler | 10 August 2021, 20:43:17 UTC | switch saving method | 10 August 2021, 20:43:17 UTC |
| 6c21601 | Paul Hoffman | 09 August 2021, 17:00:55 UTC | Update CRAN comments | 09 August 2021, 17:00:55 UTC |
| 8de9a83 | Paul Hoffman | 09 August 2021, 16:56:51 UTC | Fix to RunUMAP.Graph | 09 August 2021, 16:56:51 UTC |
| 19d635f | Andrew | 09 August 2021, 16:07:50 UTC | update DESCRIPTION and NEWS | 09 August 2021, 16:07:50 UTC |
| acadb5d | Andrew Butler | 09 August 2021, 16:06:07 UTC | Merge pull request #591 from satijalab/fix/VariablePlot_dispersion swab dispersion.scaled to dispersion | 09 August 2021, 16:06:07 UTC |
| 1976c22 | Andrew | 09 August 2021, 15:45:08 UTC | bump version, update NEWS | 09 August 2021, 15:45:08 UTC |
| aabc02d | Andrew | 09 August 2021, 15:43:18 UTC | Merge branch 'develop' into fix/VariablePlot_dispersion | 09 August 2021, 15:43:18 UTC |
| 9ef73e7 | yuhanH | 06 August 2021, 21:01:01 UTC | swab dispersion.scaled to dispersion | 06 August 2021, 21:01:01 UTC |
| 60b977c | Paul Hoffman | 06 August 2021, 21:00:37 UTC | Merge pull request #590 from satijalab/fix/SingleCellExperiment_assay Fix/single cell experiment assay | 06 August 2021, 21:00:37 UTC |
| 1ab3106 | Paul Hoffman | 06 August 2021, 20:49:32 UTC | Pin minimum version of Rcpp Bump develop version | 06 August 2021, 20:49:32 UTC |
| b7882d1 | Paul Hoffman | 06 August 2021, 20:49:01 UTC | Update NEWS | 06 August 2021, 20:49:01 UTC |
| 6287d8a | yuhanH | 05 August 2021, 17:29:23 UTC | put default assay to first | 05 August 2021, 17:29:23 UTC |
| 01b9599 | yuhanH | 05 August 2021, 17:27:36 UTC | fix dr swap exp | 05 August 2021, 17:27:36 UTC |
| 434d918 | Andrew Butler | 02 August 2021, 14:10:10 UTC | Merge pull request #588 from satijalab/feat/image_alpha propogate image.alpha to convenience fxns | 02 August 2021, 14:10:10 UTC |
| 53fe706 | Andrew | 30 July 2021, 21:12:37 UTC | bump version, update NEWS | 30 July 2021, 21:12:37 UTC |
| 921924f | Andrew | 30 July 2021, 21:11:30 UTC | Merge branch 'develop' into feat/image_alpha | 30 July 2021, 21:11:30 UTC |
| 420bf90 | Andrew Butler | 30 July 2021, 21:08:59 UTC | Merge pull request #587 from satijalab/fix/heatmap Remove random characters from heatmap legend | 30 July 2021, 21:08:59 UTC |
| 56e3bf4 | Andrew | 30 July 2021, 18:48:46 UTC | bump version | 30 July 2021, 18:48:46 UTC |
| 6b3e1af | Andrew | 30 July 2021, 18:48:27 UTC | Merge branch 'develop' into fix/heatmap | 30 July 2021, 18:48:27 UTC |
| 421f472 | Andrew Butler | 16 July 2021, 21:33:20 UTC | Merge pull request #586 from satijalab/feat/ReadParseBio add ReadParseBio | 16 July 2021, 21:33:20 UTC |
| c78c39c | Andrew | 16 July 2021, 21:22:25 UTC | bump version | 16 July 2021, 21:22:25 UTC |
| 32f83c1 | Andrew | 16 July 2021, 21:22:14 UTC | merge | 16 July 2021, 21:22:14 UTC |
| 4658e44 | Andrew | 16 July 2021, 20:44:06 UTC | propogate image.alpha to convenience fxns | 16 July 2021, 20:44:06 UTC |
| 1baa39e | Tim Stuart | 16 July 2021, 20:24:06 UTC | Merge branch 'develop' into fix/heatmap | 16 July 2021, 20:24:06 UTC |
| fb0394a | Tim Stuart | 16 July 2021, 20:23:20 UTC | Merge pull request #584 from satijalab/fix/CCA_names fix cell name issue in RunCCA | 16 July 2021, 20:23:20 UTC |
| 2071066 | timoast | 16 July 2021, 20:22:59 UTC | Update release notes | 16 July 2021, 20:22:59 UTC |
| eeed8a0 | timoast | 16 July 2021, 20:20:23 UTC | update release notes | 16 July 2021, 20:20:23 UTC |
| 93527b5 | timoast | 16 July 2021, 20:11:25 UTC | Fix heatmap legend; #4660 | 16 July 2021, 20:11:25 UTC |
| dd80ff6 | Saket Choudhary | 15 July 2021, 20:12:16 UTC | bump version, update NEWS | 15 July 2021, 20:13:21 UTC |
| a1cc5ea | Andrew Butler | 15 July 2021, 17:09:56 UTC | add ReadParseBio | 15 July 2021, 17:09:56 UTC |
| 7c9a047 | Andrew Butler | 15 July 2021, 16:39:51 UTC | Merge branch 'master' into develop | 15 July 2021, 16:39:51 UTC |
| ee2cba1 | Andrew Butler | 15 July 2021, 13:25:54 UTC | Merge pull request #585 from satijalab/docs/tricycle add tricycle entry to wrappers table | 15 July 2021, 13:25:54 UTC |
| dabb0c4 | Andrew Butler | 14 July 2021, 21:10:43 UTC | add tricycle entry to wrappers table | 14 July 2021, 21:10:43 UTC |
| 1baabf2 | Andrew Butler | 14 July 2021, 19:18:53 UTC | fix cell name issue in RunCCA | 14 July 2021, 19:18:53 UTC |
| 62a43ef | Andrew Butler | 12 July 2021, 21:59:18 UTC | Merge pull request #583 from satijalab/feat/densify_DE Add densify option to FindMarkers | 12 July 2021, 21:59:18 UTC |
| eb45b35 | Andrew Butler | 12 July 2021, 18:44:34 UTC | bump version, update NEWS | 12 July 2021, 18:44:34 UTC |
| 0854a51 | Andrew Butler | 12 July 2021, 18:42:15 UTC | Merge branch 'develop' into feat/densify_DE | 12 July 2021, 18:42:15 UTC |
| 58dd5c7 | Andrew Butler | 12 July 2021, 18:41:30 UTC | Merge branch 'develop' into feat/densify_DE | 12 July 2021, 18:41:30 UTC |
| c5d1c9e | Saket Choudhary | 12 July 2021, 18:26:07 UTC | Merge pull request #582 from satijalab/feat/readstarsolor Add ReadSTARsolo | 12 July 2021, 18:26:07 UTC |
| 9a39388 | Andrew Butler | 12 July 2021, 13:30:39 UTC | bump version, update NEWS | 12 July 2021, 13:30:39 UTC |
| 5b8f1eb | Andrew Butler | 12 July 2021, 13:26:21 UTC | Merge branch 'develop' into feat/readstarsolor | 12 July 2021, 13:26:21 UTC |
| f6e9523 | Andrew Butler | 12 July 2021, 13:26:17 UTC | add missing doc entry | 12 July 2021, 13:26:17 UTC |
| 65e5167 | Andrew Butler | 12 July 2021, 13:19:15 UTC | Merge pull request #580 from satijalab/fix/binning Fix bug in FVF with selection.method='mvp' | 12 July 2021, 13:19:15 UTC |
| 361c688 | Andrew | 12 July 2021, 00:33:09 UTC | bump version, update NEWS | 12 July 2021, 00:33:09 UTC |
| c249bd2 | Andrew | 12 July 2021, 00:31:19 UTC | Merge branch 'develop' into fix/binning | 12 July 2021, 00:31:19 UTC |
| 70163be | Andrew Butler | 11 July 2021, 23:11:37 UTC | Merge pull request #579 from satijalab/issue_4633 update singlecellexperiment | 11 July 2021, 23:11:37 UTC |
| 3341626 | Andrew | 11 July 2021, 21:20:35 UTC | bump version, update NEWS | 11 July 2021, 21:20:35 UTC |
| 14bca76 | Andrew | 11 July 2021, 21:17:59 UTC | Merge branch 'develop' into issue_4633 | 11 July 2021, 21:17:59 UTC |
| 6781439 | Andrew | 11 July 2021, 21:17:56 UTC | minor style tweaks | 11 July 2021, 21:17:56 UTC |
| 2428b0d | Andrew Butler | 11 July 2021, 02:06:55 UTC | Merge pull request #581 from satijalab/fix/readmtx Fix ReadMtx to read absolute paths | 11 July 2021, 02:06:55 UTC |
| 77e6c19 | Andrew | 11 July 2021, 01:57:37 UTC | bump version | 11 July 2021, 01:57:37 UTC |
| 8dc3ee0 | Saket Choudhary | 09 July 2021, 22:38:52 UTC | Add densify option to FindMarkers | 09 July 2021, 22:38:52 UTC |
| 736a951 | Saket Choudhary | 09 July 2021, 22:26:04 UTC | Add ReadSTARsolo function | 09 July 2021, 22:26:04 UTC |
| aaded10 | Saket Choudhary | 09 July 2021, 22:10:19 UTC | Update NEWS.md | 09 July 2021, 22:10:19 UTC |
| 9e62d82 | Saket Choudhary | 09 July 2021, 22:05:33 UTC | Update NEWS | 09 July 2021, 22:05:33 UTC |
| 0a06935 | Saket Choudhary | 09 July 2021, 22:01:11 UTC | silence warning on normalize path | 09 July 2021, 22:01:11 UTC |
| 0b2af87 | Saket Choudhary | 09 July 2021, 21:54:08 UTC | Fix ReadMtx to read both realtive and absolute paths | 09 July 2021, 21:54:08 UTC |
| 7189e1d | Andrew Butler | 09 July 2021, 21:03:13 UTC | Merge pull request #4641 from royfrancis/spatial-read-custom-image Allow user to specify images to Load10X_Spatial | 09 July 2021, 21:03:13 UTC |
| 69a3ae3 | Andrew | 09 July 2021, 20:34:41 UTC | bump version, update NEWS | 09 July 2021, 20:34:41 UTC |
| 2f4c7c6 | Andrew | 09 July 2021, 20:33:23 UTC | Merge branch 'develop' of github.com:satijalab/seurat into spatial-read-custom-image | 09 July 2021, 20:33:23 UTC |
| 1d123b1 | Andrew | 09 July 2021, 20:33:00 UTC | run docs, minor style tweaks | 09 July 2021, 20:33:00 UTC |
| fa3f30a | torkencz | 09 July 2021, 20:26:13 UTC | scaledata added back Now makes scaledata if feature number check is passed. | 09 July 2021, 20:26:13 UTC |
| 5d67d73 | Andrew Butler | 09 July 2021, 19:27:48 UTC | Merge pull request #4630 from lldelisle/densMAP support densmap | 09 July 2021, 19:27:48 UTC |
| 8ee9ace | timoast | 09 July 2021, 19:25:34 UTC | Fix bug in FVF with selection.method='mvp' | 09 July 2021, 19:25:34 UTC |
| ca11f5c | Andrew | 09 July 2021, 18:37:51 UTC | bump version, update NEWS | 09 July 2021, 18:37:51 UTC |
| 426951c | Andrew | 09 July 2021, 18:35:51 UTC | Merge branch 'develop' of github.com:satijalab/seurat into densMAP | 09 July 2021, 18:35:51 UTC |
| bb62c2f | Andrew | 09 July 2021, 18:35:16 UTC | run docs | 09 July 2021, 18:35:16 UTC |
