| 5f03221 | Andrew Butler | 09 July 2021, 18:15:26 UTC | Merge pull request #4719 from AustinHartman/ah-fix-typo fix typos in two preprocessing error messages | 09 July 2021, 18:15:26 UTC |
| bb02e8d | Andrew | 09 July 2021, 18:14:00 UTC | Merge branch 'develop' of github.com:satijalab/seurat into develop | 09 July 2021, 18:14:00 UTC |
| 4d185f8 | Andrew Butler | 09 July 2021, 18:13:19 UTC | Merge pull request #4718 from samuel-marsh/update_vignette_pbmc3k_slice Update pbmc3k vignette: replace `top_n` | 09 July 2021, 18:13:19 UTC |
| ca0a3a0 | Andrew Butler | 08 July 2021, 20:03:16 UTC | Merge pull request #577 from satijalab/fix/Integration_tool delete tools before integration | 08 July 2021, 20:03:16 UTC |
| 5ea5979 | Andrew | 08 July 2021, 17:34:04 UTC | bump version, update NEWS | 08 July 2021, 17:34:04 UTC |
| b3b5f6f | Andrew | 08 July 2021, 17:25:30 UTC | Merge branch 'develop' into fix/Integration_tool | 08 July 2021, 17:25:30 UTC |
| e2ea750 | Andrew Butler | 08 July 2021, 16:25:35 UTC | Merge pull request #576 from satijalab/fix/FSVF fixes to FSVF | 08 July 2021, 16:25:35 UTC |
| 644f233 | Andrew | 08 July 2021, 14:37:16 UTC | bump version, update NEWS | 08 July 2021, 14:37:16 UTC |
| 1ef2a4a | AustinHartman | 02 July 2021, 22:26:26 UTC | fix typos | 02 July 2021, 22:26:26 UTC |
| f02be30 | samuel-marsh | 02 July 2021, 14:12:35 UTC | Update vignette: replace top_n | 02 July 2021, 14:12:35 UTC |
| c888195 | torkencz | 01 July 2021, 19:27:40 UTC | update singlecellexperiment Removed scaledata as it creates an issue with unmatched number of rows. This in turn creates an issue with Summarized experiment | 01 July 2021, 19:27:40 UTC |
| c27bc2e | yuhanH | 25 June 2021, 18:46:33 UTC | delete tools before integration | 25 June 2021, 18:46:33 UTC |
| f0d4c39 | Paul Hoffman | 21 June 2021, 17:51:24 UTC | Merge pull request #575 from satijalab/docs/hto_clean clean up HTODemux output chunk | 21 June 2021, 17:51:24 UTC |
| 3d5d99e | Andrew Butler | 21 June 2021, 14:46:07 UTC | fix gene removal | 21 June 2021, 14:46:07 UTC |
| b86eb8f | Roy Francis | 16 June 2021, 16:35:29 UTC | Allow user to specify images to Load10X_Spatial | 16 June 2021, 16:35:29 UTC |
| a00ec76 | Andrew | 15 June 2021, 13:04:32 UTC | fixes to FSVF | 15 June 2021, 13:04:32 UTC |
| f5094aa | Lucille Delisle | 15 June 2021, 12:04:21 UTC | support densmap | 15 June 2021, 12:04:21 UTC |
| 340b348 | Tim Stuart | 14 June 2021, 21:08:34 UTC | Merge pull request #574 from satijalab/feat/clustree_reduction Add `reduction` parameter to `BuildClusterTree()` | 14 June 2021, 21:08:34 UTC |
| f122e17 | timoast | 14 June 2021, 21:08:04 UTC | Update release notes | 14 June 2021, 21:08:04 UTC |
| ab9510f | timoast | 14 June 2021, 21:06:40 UTC | Merge branch 'develop' into feat/clustree_reduction | 14 June 2021, 21:06:40 UTC |
| 77562be | Andrew | 14 June 2021, 14:20:12 UTC | add miQC to wrappers table | 14 June 2021, 14:20:12 UTC |
| 58538b1 | Andrew | 14 June 2021, 13:46:32 UTC | clean up HTODemux output chunk | 14 June 2021, 13:46:32 UTC |
| be828b6 | timoast | 11 June 2021, 20:12:04 UTC | Add reduction parameter; #4598 | 11 June 2021, 20:12:04 UTC |
| 9b38929 | Paul Hoffman | 11 June 2021, 19:17:45 UTC | Merge pull request #4608 from satijalab/develop Seurat v4.0.3 | 11 June 2021, 19:17:45 UTC |
| d0cd778 | Paul Hoffman | 10 June 2021, 17:29:34 UTC | Merge pull request #573 from satijalab/release/4.0.3 Prep for release of 4.0.3 | 10 June 2021, 17:29:34 UTC |
| 7ffd355 | Paul Hoffman | 10 June 2021, 17:25:37 UTC | Update dates | 10 June 2021, 17:25:37 UTC |
| 599d8ba | Paul Hoffman | 09 June 2021, 13:56:51 UTC | Fix broken documentation | 09 June 2021, 13:56:51 UTC |
| 0714eb0 | Paul Hoffman | 09 June 2021, 13:30:57 UTC | Update CRAN comments | 09 June 2021, 13:30:57 UTC |
| fa10ca2 | Paul Hoffman | 09 June 2021, 13:30:49 UTC | Pin latest version of SeuratObject | 09 June 2021, 13:30:49 UTC |
| c3a2583 | Andrew | 08 June 2021, 20:27:26 UTC | replace v4preprint with paper | 08 June 2021, 20:27:26 UTC |
| 57217d8 | Andrew | 08 June 2021, 13:55:50 UTC | release prep | 08 June 2021, 13:55:50 UTC |
| 3ccb993 | Andrew Butler | 08 June 2021, 13:51:54 UTC | Merge pull request #571 from satijalab/feat/scatterJitter Add jitter option to FeatureScatter | 08 June 2021, 13:51:54 UTC |
| 04ba209 | Andrew | 08 June 2021, 13:41:31 UTC | bump version, update NEWS | 08 June 2021, 13:41:31 UTC |
| 5e4037e | Andrew | 08 June 2021, 02:30:01 UTC | Merge branch 'develop' into feat/scatterJitter | 08 June 2021, 02:30:01 UTC |
| ae27911 | Andrew Butler | 08 June 2021, 02:29:33 UTC | Merge pull request #572 from satijalab/fix/sce_conversion fix sce conversion when reducedDim is missing names | 08 June 2021, 02:29:33 UTC |
| 0ca5130 | Andrew | 07 June 2021, 23:39:19 UTC | update NEWS, bump version | 07 June 2021, 23:39:19 UTC |
| ec94c09 | Andrew Butler | 07 June 2021, 21:05:08 UTC | make roundtrip names consistent when possible | 07 June 2021, 21:05:08 UTC |
| 8482f75 | Andrew Butler | 07 June 2021, 18:51:00 UTC | fix altExp convert | 07 June 2021, 18:51:00 UTC |
| dfa68df | Andrew Butler | 07 June 2021, 15:57:18 UTC | Merge branch 'develop' into fix/sce_conversion | 07 June 2021, 15:57:18 UTC |
| 60230d6 | Andrew Butler | 07 June 2021, 15:55:33 UTC | Merge pull request #570 from satijalab/fix/SpatialPlot_alpha enable alpha parameter for SpatialDimPlot | 07 June 2021, 15:55:33 UTC |
| 8debeb1 | Andrew Butler | 07 June 2021, 15:07:16 UTC | fix colname dropping issue in feature metadata | 07 June 2021, 15:07:16 UTC |
| 53cc056 | Andrew Butler | 07 June 2021, 13:38:09 UTC | bump verion, update NEWS | 07 June 2021, 13:38:09 UTC |
| 2506757 | Andrew | 04 June 2021, 21:53:35 UTC | fix sce conversion when reducedDim is missing names | 04 June 2021, 21:53:35 UTC |
| aa18912 | Jaison Jain | 04 June 2021, 15:49:27 UTC | docs | 04 June 2021, 15:49:27 UTC |
| 29a6331 | Jaison Jain | 04 June 2021, 15:49:06 UTC | add jitter option to FeatureScatter + related fxns | 04 June 2021, 15:49:06 UTC |
| 7a0e25e | Andrew | 02 June 2021, 23:53:13 UTC | Merge branch 'develop' into fix/SpatialPlot_alpha | 02 June 2021, 23:53:13 UTC |
| 01a8a0c | Andrew Butler | 02 June 2021, 23:52:38 UTC | Merge pull request #569 from satijalab/feat/sce_scaledata transfer scale.data slot to assay in SCE conversion | 02 June 2021, 23:52:38 UTC |
| 7a996cf | Andrew | 02 June 2021, 20:01:25 UTC | bump version, update NEWS | 02 June 2021, 20:01:25 UTC |
| 42d4a01 | Andrew | 02 June 2021, 20:00:00 UTC | merge | 02 June 2021, 20:00:00 UTC |
| 8616d90 | Andrew Butler | 02 June 2021, 19:54:44 UTC | Merge pull request #568 from satijalab/fix/UpdateSymbolList UpdateSymbolList no longer searches aliases | 02 June 2021, 19:54:44 UTC |
| 5991ca0 | Andrew | 02 June 2021, 16:52:23 UTC | bump version, update NEWS | 02 June 2021, 16:52:23 UTC |
| 5f39ee9 | Andrew | 01 June 2021, 21:37:04 UTC | Merge branch 'develop' into fix/UpdateSymbolList | 01 June 2021, 21:37:04 UTC |
| a5cb5ed | Andrew | 01 June 2021, 21:33:46 UTC | bump version | 01 June 2021, 21:33:46 UTC |
| ff626fe | Paul Hoffman | 01 June 2021, 21:04:58 UTC | Merge pull request #567 from satijalab/fix/sce_convert fix assay metadata setting error | 01 June 2021, 21:04:58 UTC |
| 66cbaee | Andrew Butler | 01 June 2021, 13:22:31 UTC | fix multiassay in both versions | 01 June 2021, 13:22:31 UTC |
| 8d45e29 | Andrew | 01 June 2021, 03:48:55 UTC | altExp fix | 01 June 2021, 03:48:55 UTC |
| 75417fe | Andrew | 31 May 2021, 15:20:26 UTC | forgot quotes | 31 May 2021, 15:20:26 UTC |
| e1abe08 | Andrew | 31 May 2021, 13:07:16 UTC | another seuratdata fix | 31 May 2021, 13:07:16 UTC |
| 129920b | Andrew | 31 May 2021, 04:39:10 UTC | fix seuratdata | 31 May 2021, 04:39:10 UTC |
| 2287748 | Andrew | 31 May 2021, 01:20:53 UTC | fix DimReduc conversion | 31 May 2021, 01:20:53 UTC |
| b7ad561 | Andrew | 28 May 2021, 21:24:13 UTC | add doc entry | 28 May 2021, 21:24:13 UTC |
| 7b817c0 | Andrew | 28 May 2021, 21:21:16 UTC | enable alpha parameter for SpatialDimPlot | 28 May 2021, 21:21:16 UTC |
| 7990019 | Andrew | 28 May 2021, 19:46:58 UTC | transfer scale.data slot to assay in SCE conversion | 28 May 2021, 19:46:58 UTC |
| b2abc82 | Andrew | 28 May 2021, 19:38:35 UTC | Merge branch 'develop' into fix/sce_convert | 28 May 2021, 19:38:35 UTC |
| 892096f | Paul Hoffman | 28 May 2021, 19:25:34 UTC | UpdateSymbolList no longer searches aliases Currently, UpdateSymbolList will sometimes provide alternate names rather than simply updating old names This patch exposes the search types in GeneSymbolThesarus to the user and forces the search perfomed by UpdateSymbolList to only be updates | 28 May 2021, 19:25:34 UTC |
| 2d7beb5 | Andrew | 28 May 2021, 18:59:06 UTC | fix assay metadata setting error | 28 May 2021, 18:59:06 UTC |
| ec9dbe2 | Paul Hoffman | 28 May 2021, 17:36:12 UTC | Merge branch 'develop' of github.com:satijalab/seurat-private into develop | 28 May 2021, 17:36:12 UTC |
| b83acea | Paul Hoffman | 28 May 2021, 17:33:46 UTC | Merge pull request #4532 from bbimber/SingleCellExperiment Bugfix to as.SingleCellExperiment | 28 May 2021, 17:33:46 UTC |
| 410f968 | Paul Hoffman | 28 May 2021, 17:14:38 UTC | Bump develop version Update changelog | 28 May 2021, 17:14:38 UTC |
| b152aed | Paul Hoffman | 28 May 2021, 16:56:34 UTC | Skip SCE tests on CRAN Check if SingleCellExperiment is installed before checking Kill tests that require Bioc 3.13/R 4.1 | 28 May 2021, 16:56:34 UTC |
| 3a80651 | Paul Hoffman | 28 May 2021, 16:51:45 UTC | Minor style fixes | 28 May 2021, 16:51:45 UTC |
| 469dd48 | Andrew Butler | 28 May 2021, 13:17:08 UTC | Merge pull request #558 from satijalab/feat/store_ref.reduction check reference.reduction in FindTransferAnchors | 28 May 2021, 13:17:08 UTC |
| c93899a | Andrew | 27 May 2021, 21:59:00 UTC | minor style changes, update NEWS, bump version | 27 May 2021, 21:59:00 UTC |
| 586afba | Andrew | 27 May 2021, 21:52:28 UTC | Merge branch 'develop' into feat/store_ref.reduction | 27 May 2021, 21:52:28 UTC |
| 8b32544 | Andrew Butler | 27 May 2021, 21:49:57 UTC | Merge pull request #566 from satijalab/docs/mapping_vignette_update explicitly specify reference.reduction in mapping vignette | 27 May 2021, 21:49:57 UTC |
| 78c2c94 | Andrew Butler | 27 May 2021, 19:34:29 UTC | explicitly specify reference.reduction | 27 May 2021, 19:34:29 UTC |
| d40234c | Paul Hoffman | 27 May 2021, 18:12:54 UTC | Merge pull request #565 from satijalab/docs/add_cipr add CIPR to wrappers table | 27 May 2021, 18:12:54 UTC |
| 05edace | Andrew | 27 May 2021, 15:15:28 UTC | Merge branch 'develop' into feat/store_ref.reduction | 27 May 2021, 15:15:28 UTC |
| 85d5ea0 | Andrew | 26 May 2021, 17:45:47 UTC | add CIPR to wrappers table | 26 May 2021, 17:45:47 UTC |
| 0091105 | bbimber | 25 May 2021, 04:15:32 UTC | Bugfix to as.SingleCellExperiment | 25 May 2021, 04:15:32 UTC |
| af2925c | rsatija | 24 May 2021, 16:34:45 UTC | Merge pull request #4529 from satijalab/develop Seurat v4.0.2 | 24 May 2021, 16:34:45 UTC |
| 058325f | Paul Hoffman | 20 May 2021, 18:13:27 UTC | Fix typo in tests | 20 May 2021, 18:13:27 UTC |
| 114c5b9 | Paul Hoffman | 20 May 2021, 17:21:57 UTC | Merge pull request #563 from satijalab/release/4.0.2 Prep release 4.0.2 | 20 May 2021, 17:21:57 UTC |
| 6597b07 | Paul Hoffman | 20 May 2021, 16:43:31 UTC | Update CRAN comments | 20 May 2021, 16:43:31 UTC |
| c3b4a6b | Paul Hoffman | 20 May 2021, 16:43:22 UTC | Update maintainer email | 20 May 2021, 16:43:22 UTC |
| b197841 | Andrew Butler | 20 May 2021, 13:36:02 UTC | Merge branch 'develop' into release/4.0.2 | 20 May 2021, 13:36:02 UTC |
| 833a1ae | Andrew Butler | 19 May 2021, 22:13:32 UTC | Merge pull request #556 from satijalab/mix_fix PlotPerturbScore fix to account for multiple cell type sc pooled CRISPR screen datasets | 19 May 2021, 22:13:32 UTC |
| d794e8e | Andrew | 19 May 2021, 20:51:46 UTC | fix background for SpatialPlots | 19 May 2021, 20:51:46 UTC |
| 963a12a | Andrew | 19 May 2021, 20:18:22 UTC | update NEWS, bump version | 19 May 2021, 20:18:22 UTC |
| ef6833f | Andrew | 19 May 2021, 20:17:41 UTC | Merge branch 'develop' into mix_fix | 19 May 2021, 20:17:41 UTC |
| b28a089 | Andrew | 19 May 2021, 20:15:32 UTC | deprecate parameter, style tweaks | 19 May 2021, 20:15:32 UTC |
| 568aa65 | Andrew | 18 May 2021, 19:25:28 UTC | prep release 4.0.2 | 18 May 2021, 19:25:28 UTC |
| 46b9f0f | Andrew Butler | 18 May 2021, 01:34:37 UTC | Merge pull request #559 from satijalab/feat/AddAzimuthResults Add Azimuth Results to Seurat Object | 18 May 2021, 01:34:37 UTC |
| c977212 | Andrew Butler | 17 May 2021, 21:16:41 UTC | update NEWS, bump version | 17 May 2021, 21:16:41 UTC |
| 02205f2 | Andrew Butler | 17 May 2021, 21:14:35 UTC | minor style adjustments | 17 May 2021, 21:14:35 UTC |
| 3f09a32 | Andrew Butler | 17 May 2021, 20:48:04 UTC | Merge branch 'develop' into feat/AddAzimuthResults | 17 May 2021, 20:48:04 UTC |
| 9b082a5 | Paul Hoffman | 14 May 2021, 18:05:25 UTC | Merge pull request #562 from satijalab/fix/fcname Pass fc.name parameter in FindMarkers | 14 May 2021, 18:05:25 UTC |
| 71b834e | Paul Hoffman | 14 May 2021, 17:42:01 UTC | Bump develop version | 14 May 2021, 17:42:01 UTC |
| 0a4656f | Paul Hoffman | 14 May 2021, 17:41:50 UTC | Merge branch 'develop' into fix/fcname | 14 May 2021, 17:41:50 UTC |
| 7cd62d6 | timoast | 14 May 2021, 15:51:31 UTC | Pass fc.name parameter; #4474 | 14 May 2021, 15:51:31 UTC |
