| 8da35ba | Paul Hoffman | 16 December 2021, 17:00:26 UTC | Merge pull request #5399 from satijalab/develop Seurat v4.0.6 | 16 December 2021, 17:00:26 UTC |
| 5a99976 | Paul Hoffman | 16 December 2021, 16:18:46 UTC | Merge pull request #5396 from satijalab/release/4.0.6 Prep release of 4.0.6 | 16 December 2021, 16:18:46 UTC |
| 288f5c0 | Paul Hoffman | 16 December 2021, 16:18:24 UTC | Update CRAN comments | 16 December 2021, 16:18:24 UTC |
| 85fbc29 | Paul Hoffman | 16 December 2021, 15:58:37 UTC | Bump version | 16 December 2021, 15:58:37 UTC |
| 9efc44d | Paul Hoffman | 14 December 2021, 20:25:06 UTC | Merge pull request #612 from satijalab/fix/ProjectUMAP_n_neighbors Fix ProjectUMAP num of neighbors error and warnings | 14 December 2021, 20:25:06 UTC |
| b42f1a1 | Paul Hoffman | 14 December 2021, 20:24:41 UTC | Update changelog Bump develop version | 14 December 2021, 20:24:41 UTC |
| 193ddc2 | Paul Hoffman | 14 December 2021, 20:22:57 UTC | Merge branch 'develop' into fix/ProjectUMAP_n_neighbors | 14 December 2021, 20:22:57 UTC |
| c720005 | Paul Hoffman | 14 December 2021, 19:27:37 UTC | Merge pull request #605 from satijalab/feat/sLSI supervised LSI | 14 December 2021, 19:27:37 UTC |
| 393ec7d | Paul Hoffman | 14 December 2021, 19:27:06 UTC | Update changelog Bump develop version | 14 December 2021, 19:27:06 UTC |
| 015a7dd | Paul Hoffman | 14 December 2021, 19:26:19 UTC | Merge branch 'develop' into feat/sLSI | 14 December 2021, 19:26:19 UTC |
| 8485f2a | Paul Hoffman | 14 December 2021, 19:25:06 UTC | Merge branch 'develop' of github.com:satijalab/seurat into develop | 14 December 2021, 19:25:06 UTC |
| 6a920f5 | yuhanH | 13 December 2021, 01:22:24 UTC | add ... in default | 13 December 2021, 01:22:24 UTC |
| 678c6d9 | yuhanH | 11 December 2021, 19:57:40 UTC | replace do.call with invoke | 11 December 2021, 19:57:40 UTC |
| 0eb44d8 | yuhanH | 11 December 2021, 19:33:33 UTC | set k.nn based on reference nn num | 11 December 2021, 19:33:33 UTC |
| 61cca80 | yuhanH | 11 December 2021, 19:25:46 UTC | add warning | 11 December 2021, 19:25:46 UTC |
| ea83c2d | yuhanH | 11 December 2021, 19:21:02 UTC | fix IntegrateEmbeddings.transfer warnings | 11 December 2021, 19:21:02 UTC |
| 9cb461b | yuhanH | 11 December 2021, 19:12:34 UTC | fix project umap assay warning | 11 December 2021, 19:12:34 UTC |
| e7b1fa8 | yuhanH | 11 December 2021, 18:29:01 UTC | change default k to 30 | 11 December 2021, 18:29:01 UTC |
| d6567ea | yuhanH | 11 December 2021, 06:03:55 UTC | fix some docu | 11 December 2021, 06:03:55 UTC |
| 6429767 | yuhanH | 11 December 2021, 05:57:09 UTC | remove sparseMatrixStats | 11 December 2021, 05:57:09 UTC |
| cd35c15 | yuhanH | 11 December 2021, 05:48:15 UTC | add sparse row warpper | 11 December 2021, 05:48:15 UTC |
| a3ea475 | timoast | 10 December 2021, 19:29:24 UTC | Update license | 10 December 2021, 19:29:24 UTC |
| db95fd7 | Avi Srivastava | 10 December 2021, 19:26:42 UTC | Update stats.cpp | 10 December 2021, 19:26:42 UTC |
| c50ff02 | yuhanH | 10 December 2021, 18:05:35 UTC | add c++ functions | 10 December 2021, 18:05:35 UTC |
| 8ebb179 | yuhanH | 10 December 2021, 18:04:07 UTC | add row operations from avi | 10 December 2021, 18:04:07 UTC |
| 8e7e610 | timoast | 07 December 2021, 16:27:33 UTC | Update docs | 07 December 2021, 16:27:33 UTC |
| d81e5b2 | yuhanH | 06 December 2021, 17:50:47 UTC | remove project parameter | 06 December 2021, 17:50:47 UTC |
| e4d4539 | timoast | 05 December 2021, 18:21:30 UTC | Update SLSI generic | 05 December 2021, 18:21:30 UTC |
| 7ccd4c9 | timoast | 05 December 2021, 18:21:13 UTC | Update docs | 05 December 2021, 18:21:13 UTC |
| bbba8dc | timoast | 05 December 2021, 18:20:38 UTC | Clean up code and documentation | 05 December 2021, 18:20:38 UTC |
| 6126fa0 | Paul Hoffman | 04 December 2021, 17:41:40 UTC | Merge pull request #5083 from satijalab/feat/export Export utility functions | 04 December 2021, 17:41:40 UTC |
| a146d36 | Paul Hoffman | 03 December 2021, 23:25:22 UTC | Merge branch 'feat/export' of github.com:satijalab/seurat into feat/export | 03 December 2021, 23:25:22 UTC |
| 42a8023 | Paul Hoffman | 03 December 2021, 23:24:36 UTC | Add concepts to new docs | 03 December 2021, 23:24:36 UTC |
| 07ae97c | timoast | 03 December 2021, 23:19:22 UTC | remove extra line | 03 December 2021, 23:19:22 UTC |
| 24d51f8 | Paul Hoffman | 03 December 2021, 21:51:13 UTC | Adjust imports | 03 December 2021, 22:03:34 UTC |
| d7ac89b | Paul Hoffman | 03 December 2021, 21:52:14 UTC | Merge pull request #608 from satijalab/doc/extensions Update extensions page | 03 December 2021, 21:52:14 UTC |
| 780d935 | Paul Hoffman | 03 December 2021, 21:46:11 UTC | Update required SeuratObject version | 03 December 2021, 21:46:11 UTC |
| c32a5de | Paul Hoffman | 03 December 2021, 21:44:51 UTC | Merge branch 'develop' into feat/export | 03 December 2021, 21:44:51 UTC |
| 2ef0427 | Paul Hoffman | 03 December 2021, 21:40:04 UTC | Merge branch 'develop' of github.com:satijalab/seurat into develop | 03 December 2021, 21:40:04 UTC |
| 34de4f6 | Tim Stuart | 03 December 2021, 21:25:40 UTC | Merge pull request #607 from satijalab/doc/reexport Add reexported functions to website reference | 03 December 2021, 21:25:40 UTC |
| 60bee68 | Tim Stuart | 03 December 2021, 21:21:03 UTC | Merge pull request #599 from satijalab/feat/docsearch Add docsearch to website | 03 December 2021, 21:21:03 UTC |
| 0194fd4 | Paul Hoffman | 03 December 2021, 20:23:39 UTC | Merge pull request #5314 from samuel-marsh/featureplot_labelcolor `FeaturePlot` Add label.color param | 03 December 2021, 20:23:39 UTC |
| 3656475 | Paul Hoffman | 03 December 2021, 20:22:59 UTC | Bump develop version Update changelog | 03 December 2021, 20:22:59 UTC |
| dc83c3a | Paul Hoffman | 03 December 2021, 20:22:12 UTC | Merge branch 'develop' into featureplot_labelcolor | 03 December 2021, 20:22:12 UTC |
| 7018f6b | Paul Hoffman | 03 December 2021, 20:21:30 UTC | Update docs | 03 December 2021, 20:21:30 UTC |
| edef19a | Tim Stuart | 03 December 2021, 20:03:17 UTC | Merge pull request #610 from satijalab/doc/wnn Link to SeuratData repo | 03 December 2021, 20:03:17 UTC |
| 647344b | timoast | 03 December 2021, 19:02:14 UTC | Link to SeuratData repo | 03 December 2021, 19:02:14 UTC |
| 4f713af | yuhanH | 22 November 2021, 13:55:49 UTC | update slsi | 22 November 2021, 13:55:49 UTC |
| b995f48 | Tim Stuart | 19 November 2021, 19:29:14 UTC | Merge branch 'master' into feat/docsearch | 19 November 2021, 19:29:14 UTC |
| c2941a1 | timoast | 19 November 2021, 19:23:30 UTC | Update extensions page | 19 November 2021, 19:23:30 UTC |
| dea33bb | timoast | 19 November 2021, 19:00:03 UTC | Add reexports to website | 19 November 2021, 19:00:03 UTC |
| eab3ed7 | samuel-marsh | 19 November 2021, 15:05:27 UTC | add label.color param | 19 November 2021, 15:05:27 UTC |
| b8ff4f8 | Saket Choudhary | 03 November 2021, 01:50:04 UTC | Merge pull request #5076 from samuel-marsh/violin_raster add violin raster | 03 November 2021, 01:50:04 UTC |
| b11c89a | Saket Choudhary | 03 November 2021, 01:49:23 UTC | Update NEWS; bump version | 03 November 2021, 01:49:23 UTC |
| 04cdde6 | Saket Choudhary | 03 November 2021, 01:46:20 UTC | Merge remote-tracking branch 'upstream/develop' into violin_raster | 03 November 2021, 01:46:20 UTC |
| 7845be2 | Saket Choudhary | 03 November 2021, 01:44:04 UTC | Suggests: ggrastr | 03 November 2021, 01:44:04 UTC |
| 7f3612c | yuhanH | 02 November 2021, 15:36:47 UTC | supervised LSI | 02 November 2021, 15:36:47 UTC |
| f192912 | Saket Choudhary | 28 October 2021, 16:59:27 UTC | Make ggrastr based rasterization optional | 28 October 2021, 16:59:27 UTC |
| 13617d3 | Saket Choudhary | 28 October 2021, 16:36:39 UTC | Merge pull request #5079 from yamanq/yamanq/conserved_min_cells Skip groups with fewer than default min.cells.group (Fixes #1971) | 28 October 2021, 16:36:39 UTC |
| f7677c2 | Saket Choudhary | 28 October 2021, 14:44:33 UTC | Merge remote-tracking branch 'upstream/develop' into violin_raster | 28 October 2021, 14:44:33 UTC |
| 22b29ff | Saket Choudhary | 28 October 2021, 14:37:51 UTC | Update NEWS; document | 28 October 2021, 14:37:51 UTC |
| fef67b0 | Saket Choudhary | 28 October 2021, 14:29:24 UTC | Merge remote-tracking branch 'upstream/develop' into yamanq/conserved_min_cells | 28 October 2021, 14:29:24 UTC |
| 826d547 | Tim Stuart | 22 October 2021, 18:34:45 UTC | Merge pull request #603 from satijalab/fix/umap_random Fix random state in umap-learn | 22 October 2021, 18:34:45 UTC |
| 3bcc0ed | timoast | 22 October 2021, 18:21:59 UTC | Update release notes | 22 October 2021, 18:21:59 UTC |
| 025b4c0 | timoast | 22 October 2021, 18:20:18 UTC | Set random state in umap-learn method; #5194 | 22 October 2021, 18:20:18 UTC |
| 7cf4c13 | Tim Stuart | 22 October 2021, 16:27:00 UTC | Merge pull request #602 from satijalab/fix/readmtx fix message in readmtx | 22 October 2021, 16:27:00 UTC |
| 675e20b | timoast | 22 October 2021, 16:25:37 UTC | Fix version history | 22 October 2021, 16:25:37 UTC |
| 9a36cff | Tim Stuart | 22 October 2021, 16:24:23 UTC | Merge branch 'develop' into fix/readmtx | 22 October 2021, 16:24:23 UTC |
| 9740698 | Paul Hoffman | 19 October 2021, 17:22:56 UTC | Merge branch 'develop' of github.com:satijalab/seurat-private into develop | 19 October 2021, 17:22:56 UTC |
| 1843511 | Paul Hoffman | 19 October 2021, 17:21:21 UTC | Merge branch 'master' of github.com:satijalab/seurat-private | 19 October 2021, 17:21:21 UTC |
| a556035 | Paul Hoffman | 19 October 2021, 17:18:24 UTC | Merge pull request #5203 from satijalab/develop Seurat v4.0.5 | 19 October 2021, 17:18:24 UTC |
| 4cba1fc | Paul Hoffman | 19 October 2021, 17:17:31 UTC | Merge branch 'master' into develop | 19 October 2021, 17:17:31 UTC |
| ff867a8 | Paul Hoffman | 19 October 2021, 17:15:04 UTC | Merge pull request #5161 from satijalab/release/4.0.5 Prep for release of 4.0.5 | 19 October 2021, 17:15:04 UTC |
| 43a0469 | Saket Choudhary | 08 October 2021, 16:29:21 UTC | Fix news | 08 October 2021, 16:29:21 UTC |
| 8b74700 | Saket Choudhary | 08 October 2021, 16:27:49 UTC | Fix readmtx error message | 08 October 2021, 16:27:49 UTC |
| 1d1b139 | Yuhan Hao | 08 October 2021, 15:24:20 UTC | Merge pull request #601 from satijalab/fix/lsiproject_center not center query lsi embeddings | 08 October 2021, 15:24:20 UTC |
| 90a9d66 | timoast | 07 October 2021, 18:21:01 UTC | Don't use suggested packages | 07 October 2021, 18:21:01 UTC |
| 565b0c8 | Paul Hoffman | 07 October 2021, 18:18:29 UTC | Only run cluster tree examples when ape is installed | 07 October 2021, 18:18:29 UTC |
| 297764c | timoast | 07 October 2021, 18:14:14 UTC | Update dev version | 07 October 2021, 18:14:14 UTC |
| 07383a0 | yuhanH | 07 October 2021, 15:51:55 UTC | add News | 07 October 2021, 15:51:55 UTC |
| b1db6d8 | yuhanH | 07 October 2021, 15:43:09 UTC | not center query lsi embeddings | 07 October 2021, 15:43:09 UTC |
| 9febef6 | Paul Hoffman | 05 October 2021, 14:41:06 UTC | Merge pull request #600 from satijalab/fix/condtest Add namespace checks to examples using ape | 05 October 2021, 14:41:06 UTC |
| 1f3bccd | Paul Hoffman | 05 October 2021, 14:40:28 UTC | Merge branch 'fix/condtest' of github.com:satijalab/seurat-private into fix/condtest | 05 October 2021, 14:40:28 UTC |
| 455a7c5 | timoast | 05 October 2021, 12:29:47 UTC | Wrap examples in namespace check | 05 October 2021, 12:29:47 UTC |
| 9344667 | Paul Hoffman | 04 October 2021, 17:52:29 UTC | Update CRAN comments | 04 October 2021, 17:52:29 UTC |
| fdbc8b2 | Paul Hoffman | 04 October 2021, 17:43:34 UTC | Update URLs | 04 October 2021, 17:43:34 UTC |
| 17503f1 | Paul Hoffman | 04 October 2021, 17:20:22 UTC | Prepare Seurat v4.0.5 | 04 October 2021, 17:20:22 UTC |
| eb8a9ff | Paul Hoffman | 04 October 2021, 14:32:41 UTC | Merge pull request #5160 from satijalab/fix/condtest Wrap examples/tests that use suggested packages in namespace guards | 04 October 2021, 14:32:41 UTC |
| f9fe181 | Paul Hoffman | 04 October 2021, 14:32:13 UTC | Bump deveop version | 04 October 2021, 14:32:13 UTC |
| b9f9478 | Paul Hoffman | 04 October 2021, 14:10:18 UTC | Wrap examples and tests that use suggested packages in namespace guards Includes: - example for `BuildClusterTree` (uses `ape`) - test for `Read10X_Spatial` (uses `hdf5r`) | 04 October 2021, 14:10:18 UTC |
| 4999fea | Saket Choudhary | 16 September 2021, 12:22:42 UTC | Add docsearch to website | 16 September 2021, 12:22:42 UTC |
| 038ab67 | Paul Hoffman | 14 September 2021, 17:38:18 UTC | Merge branch 'master' into feat/export | 14 September 2021, 17:38:18 UTC |
| 76143b5 | Paul Hoffman | 14 September 2021, 17:37:52 UTC | Fix SeuratObject branch | 14 September 2021, 17:37:52 UTC |
| 38c6b24 | Paul Hoffman | 14 September 2021, 17:33:04 UTC | Export utility funcitons | 14 September 2021, 17:33:33 UTC |
| 58fcb40 | Yaman Qalieh | 14 September 2021, 05:35:46 UTC | Skip groups with fewer than default min.cells.group (Fixes #1971) | 14 September 2021, 13:28:23 UTC |
| 25725fc | samuel-marsh | 14 September 2021, 10:55:16 UTC | add number of points check | 14 September 2021, 10:55:16 UTC |
| cdada85 | samuel-marsh | 13 September 2021, 18:38:34 UTC | add violin raster | 13 September 2021, 18:38:34 UTC |
| 4ffdad4 | Yuhan Hao | 10 September 2021, 18:22:56 UTC | Merge pull request #598 from satijalab/fix/uwot_correlation remove uwot correlation checking | 10 September 2021, 18:22:56 UTC |
| c8db88e | Paul Hoffman | 10 September 2021, 18:21:20 UTC | Update NEWS.md | 10 September 2021, 18:21:20 UTC |
| 616fabf | yuhanH | 10 September 2021, 18:18:44 UTC | bump version, update NEWS | 10 September 2021, 18:18:44 UTC |
