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05 April 2024, 18:02:13 UTC
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44c0494 Mikhail Kolmogorov09 October 2019, 17:18:44 UTCmerge master09 October 2019, 17:18:44 UTC
bd2fba7 Mikhail Kolmogorov19 August 2019, 19:26:42 UTCspecifying networkx version 2.219 August 2019, 19:26:42 UTC
2d93fe7 Mikhail Kolmogorov08 April 2019, 22:51:35 UTCUpdate README.md08 April 2019, 22:51:35 UTC
ec749b9 Mikhail Kolmogorov08 April 2019, 22:38:40 UTCdeleted old unneeded scripts, fix #37 and #3608 April 2019, 22:38:40 UTC
5159e50 Mikhail Kolmogorov08 April 2019, 22:34:47 UTCfix #3808 April 2019, 22:34:47 UTC
54a864f Mikhail Kolmogorov08 April 2019, 22:12:04 UTCremove debug print08 April 2019, 22:12:04 UTC
a9d35f7 Mikhail Kolmogorov08 April 2019, 21:24:40 UTCsetup file update08 April 2019, 21:24:40 UTC
3b50427 Mikhail Kolmogorov08 April 2019, 21:15:29 UTC2.208 April 2019, 21:15:29 UTC
5292c29 Mikhail Kolmogorov08 April 2019, 21:14:14 UTCNewick module moved to ragout root, installation instructions update08 April 2019, 21:14:14 UTC
d30f5ce Mikhail Kolmogorov08 April 2019, 19:55:07 UTCMerge pull request #41 from latticetower/master Make everything work with networkx >= 2.2.08 April 2019, 19:55:07 UTC
b32c173 Tatiana Malygina26 March 2019, 15:23:10 UTCfix another permission error during travis-ci run26 March 2019, 15:23:10 UTC
c3bc4cc Tatiana Malygina26 March 2019, 14:51:44 UTCfix permission error during travis-ci run26 March 2019, 14:51:44 UTC
9e0e4e5 Tatiana Malygina26 March 2019, 14:46:01 UTCadd networkx dependency to travis-ci script26 March 2019, 14:46:01 UTC
ae9e1d1 Tatiana Malygina26 March 2019, 14:26:56 UTCremove redundant round brackets: edges() -> edges, nodes() -> nodes26 March 2019, 14:26:56 UTC
f4d4e22 Tatiana Malygina25 March 2019, 14:08:08 UTCfix AttributeError: 'set' object has no attribute 'items'25 March 2019, 14:08:08 UTC
e3a06ef Tatiana Malygina25 March 2019, 13:19:40 UTCfix TypeError: object of type 'dictionary-keyiterator' has no len()25 March 2019, 13:32:22 UTC
d49a5c4 Tatiana Malygina25 March 2019, 13:09:21 UTCreplace edges_iter iterator with edges iterator in networkx graphs25 March 2019, 13:09:30 UTC
f865c3e Tatiana Malygina25 March 2019, 13:04:12 UTCremove networkx from lib dir25 March 2019, 13:04:12 UTC
758500e Mikhail Kolmogorov17 March 2019, 01:49:37 UTCMerge branch 'devel'17 March 2019, 01:49:37 UTC
1637fbf Mikhail Kolmogorov16 March 2019, 00:05:00 UTCMerge branch 'master' into devel16 March 2019, 00:05:00 UTC
fbffe40 Mikhail Kolmogorov16 March 2019, 00:04:27 UTCgff parser for maf2synteny16 March 2019, 00:04:27 UTC
c21e237 Mikhail Kolmogorov31 October 2018, 01:34:43 UTCCitations update31 October 2018, 01:34:43 UTC
9b706fa Mikhail Kolmogorov30 July 2018, 20:00:30 UTCversion update30 July 2018, 20:00:30 UTC
2b3e6d5 Mikhail Kolmogorov28 July 2018, 00:03:15 UTCinstallation script + repository reorganisation28 July 2018, 00:03:15 UTC
a68b9db Mikhail Kolmogorov27 July 2018, 01:48:58 UTCbioconda badge27 July 2018, 01:48:58 UTC
51ecff3 Mikhail Kolmogorov27 July 2018, 01:39:47 UTCdocs update 227 July 2018, 01:39:47 UTC
2300e45 Mikhail Kolmogorov27 July 2018, 00:03:16 UTCdocs update27 July 2018, 00:03:16 UTC
67a513a Mikhail Kolmogorov26 July 2018, 23:06:30 UTCa fix for sorting leaves by distance function26 July 2018, 23:06:30 UTC
da193f0 Mikhail Kolmogorov26 July 2018, 20:31:49 UTCupdated newick packages source, now consistent with Bioconda version26 July 2018, 20:31:49 UTC
119e6dc Mikhail Kolmogorov18 July 2018, 20:14:16 UTCsome auxialary scipts changes18 July 2018, 20:14:16 UTC
2c85472 Mikhail Kolmogorov18 July 2018, 20:12:54 UTCnon-recursive dfs implementation + some logging improvements18 July 2018, 20:12:54 UTC
626d759 Mikhail Kolmogorov09 July 2018, 19:18:39 UTCsome changes09 July 2018, 19:18:39 UTC
0cb7679 Mikhail Kolmogorov08 July 2018, 04:15:09 UTCcustom block sizes08 July 2018, 04:15:09 UTC
f453881 Mikhail Kolmogorov06 July 2018, 02:36:51 UTCminimap verification script06 July 2018, 02:36:51 UTC
71562fc Mikhail Kolmogorov20 December 2016, 19:41:37 UTCa fix for empty parent scaffold during merging20 December 2016, 19:41:37 UTC
0543d6d Mikhail Kolmogorov20 December 2016, 19:41:06 UTCmore informative message for empty permutation file20 December 2016, 19:41:06 UTC
78e959d Mikhail Kolmogorov03 December 2016, 01:15:25 UTCa fix for genomes with dots03 December 2016, 01:15:25 UTC
70de692 Mikhail Kolmogorov28 November 2016, 21:11:23 UTCcentered logo28 November 2016, 21:11:23 UTC
766b2ec Mikhail Kolmogorov28 November 2016, 21:07:05 UTCfigure fix28 November 2016, 21:07:05 UTC
8322e1d Mikhail Kolmogorov28 November 2016, 21:05:37 UTClogo28 November 2016, 21:05:37 UTC
a603106 Mikhail Kolmogorov28 November 2016, 20:39:26 UTCtypo28 November 2016, 20:39:26 UTC
c9b5d38 Mikhail Kolmogorov28 November 2016, 20:31:55 UTCminor docs update28 November 2016, 20:31:55 UTC
6eed507 Mikhail Kolmogorov28 November 2016, 20:22:31 UTCnews28 November 2016, 20:22:31 UTC
a75e60e Mikhail Kolmogorov28 November 2016, 20:19:24 UTCtypo28 November 2016, 20:19:24 UTC
26d4aac Mikhail Kolmogorov28 November 2016, 20:18:42 UTCrefinement disabled by default28 November 2016, 20:18:42 UTC
4559980 Mikhail Kolmogorov28 November 2016, 20:05:29 UTCdocumentation update28 November 2016, 20:05:29 UTC
a7b6644 Mikhail Kolmogorov14 November 2016, 19:10:13 UTCerror if no unique synteny blocks14 November 2016, 19:10:13 UTC
83789c3 Mikhail Kolmogorov09 November 2016, 23:35:46 UTCMerge branch 'master' into devel09 November 2016, 23:35:46 UTC
7ec4e12 Mikhail Kolmogorov09 November 2016, 23:35:13 UTCcounting target-specific breakpoints, --inMemory option for hal removed09 November 2016, 23:35:13 UTC
ebd9205 Mikhail Kolmogorov07 November 2016, 01:04:53 UTCUpdate README.md07 November 2016, 01:04:53 UTC
83f232f Mikhail Kolmogorov19 August 2016, 23:50:55 UTCMerge branch 'master' into devel19 August 2016, 23:50:55 UTC
4bfbda6 Max Shen19 August 2016, 19:44:37 UTCfix negative gaps after assebly refinement19 August 2016, 19:44:37 UTC
343c077 Mikhail Kolmogorov09 August 2016, 01:25:37 UTCoups09 August 2016, 01:25:37 UTC
4674e03 Mikhail Kolmogorov09 August 2016, 01:14:00 UTCsome refactoring and logging improvement09 August 2016, 01:14:00 UTC
27e6ef3 Mikhail Kolmogorov17 February 2016, 20:49:21 UTCreadme17 February 2016, 20:49:21 UTC
3bbd6c9 Mikhail Kolmogorov17 February 2016, 20:30:17 UTCan option to disable chimera detection module + sorting output fasta17 February 2016, 20:30:17 UTC
b3bf289 Mikhail Kolmogorov17 February 2016, 19:29:27 UTCMerge branch 'master' into devel17 February 2016, 19:29:27 UTC
024d279 Mikhail Kolmogorov23 January 2016, 02:49:25 UTCtests fixed23 January 2016, 02:49:25 UTC
8283a58 Mikhail Kolmogorov23 January 2016, 02:13:28 UTCsmall improvement23 January 2016, 02:13:28 UTC
73def46 Mikhail Kolmogorov23 January 2016, 02:11:45 UTCa small fix in verify-order23 January 2016, 02:11:45 UTC
b4ec394 Mikhail Kolmogorov19 January 2016, 02:30:05 UTCtest fix19 January 2016, 02:30:05 UTC
f2e21cd Mikhail Kolmogorov19 January 2016, 02:23:37 UTCa small fix for verification script19 January 2016, 02:23:37 UTC
e1cc723 Mikhail Kolmogorov18 November 2015, 03:26:21 UTCmaf2synteny update18 November 2015, 03:26:21 UTC
f95ea61 Mikhail Kolmogorov12 November 2015, 22:16:22 UTCUpdate README.md12 November 2015, 22:16:22 UTC
be8d780 Mikhail Kolmogorov12 November 2015, 22:14:48 UTCUpdate README.md12 November 2015, 22:14:48 UTC
4441312 Mikhail Kolmogorov07 November 2015, 02:40:53 UTCchromosome renaming07 November 2015, 02:40:53 UTC
f0f5d82 Mikhail Kolmogorov06 November 2015, 00:27:47 UTCMerge branch 'devel' into chr_map06 November 2015, 00:27:47 UTC
2c599db Mikhail Kolmogorov05 November 2015, 22:52:41 UTCgaps without upper limit05 November 2015, 22:52:41 UTC
8d58eaf Mikhail Kolmogorov04 November 2015, 22:33:06 UTCminor refactoring04 November 2015, 22:33:06 UTC
245b80c Mikhail Kolmogorov04 November 2015, 04:10:23 UTCMerge branch 'devel' into chr_map04 November 2015, 04:10:23 UTC
246ddba Mikhail Kolmogorov04 November 2015, 03:56:48 UTCa fix for gap estimation04 November 2015, 03:56:48 UTC
2f3b5c4 Mikhail Kolmogorov02 November 2015, 19:38:37 UTCjoins from chromosome map02 November 2015, 19:38:37 UTC
eb471cf Mikhail Kolmogorov01 November 2015, 02:51:52 UTCa small improvement01 November 2015, 02:51:52 UTC
7e640fe Mikhail Kolmogorov01 November 2015, 02:41:09 UTCchromosome map support01 November 2015, 02:41:09 UTC
596d7c0 Mikhail Kolmogorov01 November 2015, 02:40:24 UTCsome refactoring01 November 2015, 02:40:24 UTC
1a3ae32 Son Pham30 October 2015, 21:37:12 UTCUpdate README.md30 October 2015, 21:37:12 UTC
f37511c Mikhail Kolmogorov29 September 2015, 00:25:49 UTCminor docs change29 September 2015, 00:25:49 UTC
19d3ad4 Mikhail Kolmogorov29 September 2015, 00:08:17 UTCwrong date29 September 2015, 00:08:17 UTC
2284233 Mikhail Kolmogorov29 September 2015, 00:07:33 UTC1.229 September 2015, 00:07:33 UTC
bdcccea Mikhail Kolmogorov28 September 2015, 23:46:25 UTCMerge branch 'devel'28 September 2015, 23:46:25 UTC
fd9b35c Mikhail Kolmogorov28 September 2015, 23:46:14 UTCminor28 September 2015, 23:46:14 UTC
fa6f861 Mikhail Kolmogorov28 September 2015, 23:31:21 UTCMerge branch 'devel' of https://github.com/fenderglass/Ragout into devel28 September 2015, 23:31:21 UTC
0a93120 Mikhail Kolmogorov28 September 2015, 23:31:02 UTCa fix for empty links information28 September 2015, 23:31:02 UTC
eb1692c Mikhail Kolmogorov28 September 2015, 18:38:57 UTCdocumantation improved28 September 2015, 18:38:57 UTC
04bb6e1 Mikhail Kolmogorov25 September 2015, 20:57:32 UTCpriority queue removed25 September 2015, 20:57:32 UTC
2861ecb Mikhail Kolmogorov25 September 2015, 20:44:56 UTCa fix in rearrangement projection25 September 2015, 20:44:56 UTC
a3bd4e5 Mikhail Kolmogorov25 September 2015, 01:00:30 UTCoutput generator refactoring25 September 2015, 01:00:30 UTC
1338e4b Mikhail Kolmogorov24 September 2015, 02:04:50 UTCpartially unplaced contigs24 September 2015, 02:04:50 UTC
581be6b Mikhail Kolmogorov24 September 2015, 01:43:37 UTCdeterministic tree construction + fix in sorting by tree distance24 September 2015, 01:43:37 UTC
545c417 Mikhail Kolmogorov24 September 2015, 01:42:03 UTCscript renaming24 September 2015, 01:42:03 UTC
061828f Mikhail Kolmogorov12 September 2015, 14:18:04 UTCchromosome names in support fields12 September 2015, 14:18:04 UTC
03e5624 Mikhail Kolmogorov12 September 2015, 12:15:21 UTCragout version in log12 September 2015, 12:15:21 UTC
be33c34 Mikhail Kolmogorov09 September 2015, 16:55:11 UTCsmall fix for merge algorithm09 September 2015, 16:55:11 UTC
3c142fd Mikhail Kolmogorov09 September 2015, 16:40:21 UTCa fix for one-contig scaffolds09 September 2015, 16:40:21 UTC
610f222 Mikhail Kolmogorov25 August 2015, 17:46:15 UTCbeta version notice25 August 2015, 17:46:15 UTC
11c2a94 Mikhail Kolmogorov25 August 2015, 17:29:16 UTCMerge branch 'devel' into path_cover Syncronizing branches25 August 2015, 17:29:16 UTC
9780da0 Mikhail Kolmogorov25 August 2015, 17:17:56 UTCminor documentation change25 August 2015, 17:17:56 UTC
3b9522a Mikhail Kolmogorov20 August 2015, 11:49:14 UTCfixed one-contig scaffolds20 August 2015, 11:49:14 UTC
8a30ee7 Mikhail Kolmogorov19 August 2015, 10:33:47 UTChandling scaffolds from a single fragment19 August 2015, 10:33:47 UTC
500b10e Mikhail Kolmogorov18 August 2015, 10:55:51 UTCdocumentation improved18 August 2015, 10:55:51 UTC
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