| 4011904 | fenderglass | 08 August 2014, 06:20:32 UTC | version 1.0 | 08 August 2014, 06:20:32 UTC |
| 5783aa3 | fenderglass | 07 August 2014, 19:31:39 UTC | minor logging improvement | 07 August 2014, 19:31:39 UTC |
| 4c47ee5 | fenderglass | 07 August 2014, 19:06:52 UTC | refine by default, additinal testing for native modules | 07 August 2014, 19:06:52 UTC |
| 8cdb83e | fenderglass | 07 August 2014, 09:29:42 UTC | refinement added to tests | 07 August 2014, 09:29:42 UTC |
| c09edca | fenderglass | 07 August 2014, 09:06:56 UTC | changed rows order in links file, debug output improved | 07 August 2014, 09:06:56 UTC |
| e0a19b4 | fenderglass | 06 August 2014, 18:23:39 UTC | small improvement in refinement | 06 August 2014, 18:23:39 UTC |
| 5cfb484 | fenderglass | 30 July 2014, 18:23:05 UTC | faster cut vertex algorithm, fixed bug with debug | 30 July 2014, 18:23:05 UTC |
| f7a3a1f | fenderglass | 22 July 2014, 17:04:18 UTC | more pretty links, ord removed | 22 July 2014, 17:04:18 UTC |
| 340a0ea | fenderglass | 21 July 2014, 15:32:55 UTC | links output format slightly changed | 21 July 2014, 15:32:55 UTC |
| 2b0ae81 | fenderglass | 21 July 2014, 14:45:33 UTC | Merge branch 'lanna' of github.com:fenderglass/Ragout into devel | 21 July 2014, 14:45:33 UTC |
| 94082c3 | fenderglass | 21 July 2014, 12:53:51 UTC | example typo | 21 July 2014, 12:53:51 UTC |
| b924b79 | Anna Lioznova | 21 July 2014, 12:49:40 UTC | Output links added | 21 July 2014, 12:49:40 UTC |
| 7b354df | fenderglass | 21 July 2014, 12:39:25 UTC | small fix | 21 July 2014, 12:39:25 UTC |
| 6c6048b | fenderglass | 21 July 2014, 12:03:03 UTC | Improved manual | 21 July 2014, 12:03:03 UTC |
| e59caf7 | fenderglass | 21 July 2014, 09:46:41 UTC | Merge branch 'master' into devel | 21 July 2014, 09:46:41 UTC |
| 480a94c | fenderglass | 18 July 2014, 18:59:24 UTC | added colored graph | 18 July 2014, 18:59:24 UTC |
| 5bc5199 | fenderglass | 18 July 2014, 18:35:36 UTC | removing red edges after scoring | 18 July 2014, 18:35:36 UTC |
| d01e7c7 | fenderglass | 17 July 2014, 19:32:40 UTC | another one | 17 July 2014, 19:32:40 UTC |
| f612984 | fenderglass | 17 July 2014, 19:28:00 UTC | small manual fix | 17 July 2014, 19:28:00 UTC |
| 65ade75 | fenderglass | 08 July 2014, 10:52:02 UTC | Merge branch 'master' into devel | 08 July 2014, 10:52:02 UTC |
| 943c9e6 | fenderglass | 08 July 2014, 10:50:54 UTC | fixed example | 08 July 2014, 10:50:54 UTC |
| 1ab7d18 | fenderglass | 05 July 2014, 10:40:47 UTC | Merge branch 'devel' | 05 July 2014, 10:40:47 UTC |
| 0994508 | fenderglass | 22 June 2014, 00:29:06 UTC | makefile fix for mac | 22 June 2014, 00:29:06 UTC |
| 1c81dd6 | fenderglass | 05 July 2014, 10:06:59 UTC | oups | 05 July 2014, 10:06:59 UTC |
| 9da47eb | fenderglass | 05 July 2014, 10:05:09 UTC | download link update, nopostprocess option for sibelia | 05 July 2014, 10:05:09 UTC |
| a9383f3 | fenderglass | 04 July 2014, 13:20:09 UTC | minor fixes | 04 July 2014, 13:20:09 UTC |
| e50e896 | fenderglass | 03 July 2014, 13:39:35 UTC | useful warnings + extra overlap parameter | 03 July 2014, 13:39:35 UTC |
| 10d36fd | fenderglass | 03 July 2014, 09:48:05 UTC | maf2synteny parameters | 03 July 2014, 09:48:05 UTC |
| d05e366 | fenderglass | 02 July 2014, 15:43:41 UTC | added more parameters to config, new format | 02 July 2014, 15:43:41 UTC |
| f7b221e | fenderglass | 02 July 2014, 15:08:32 UTC | minor makefile change | 02 July 2014, 15:08:32 UTC |
| 0453aa0 | fenderglass | 01 July 2014, 13:28:35 UTC | forgot to add Sibelia | 01 July 2014, 13:28:35 UTC |
| 6453081 | fenderglass | 01 July 2014, 13:25:51 UTC | automatic testing | 01 July 2014, 13:25:51 UTC |
| 5f41439 | fenderglass | 29 June 2014, 20:36:07 UTC | build status | 29 June 2014, 20:36:07 UTC |
| 08bc1c1 | fenderglass | 29 June 2014, 20:27:02 UTC | more correct makefile | 29 June 2014, 20:27:02 UTC |
| bbdf484 | fenderglass | 29 June 2014, 20:05:03 UTC | minor makefile fix | 29 June 2014, 20:05:03 UTC |
| 6baf07d | fenderglass | 29 June 2014, 19:58:43 UTC | tabs -> spaces | 29 June 2014, 19:58:43 UTC |
| 41d592f | fenderglass | 29 June 2014, 19:50:25 UTC | travis | 29 June 2014, 19:50:25 UTC |
| d3bc49a | fenderglass | 22 June 2014, 15:21:31 UTC | fixed debug directory creation | 22 June 2014, 15:21:31 UTC |
| 848cefa | fenderglass | 22 June 2014, 11:18:27 UTC | mammals notice | 22 June 2014, 11:18:27 UTC |
| b0c4871 | fenderglass | 22 June 2014, 10:58:46 UTC | oups | 22 June 2014, 10:58:46 UTC |
| ac052d0 | fenderglass | 22 June 2014, 10:55:55 UTC | small fix | 22 June 2014, 10:55:55 UTC |
| bf19ec7 | fenderglass | 22 June 2014, 10:54:10 UTC | assemblers mentioned | 22 June 2014, 10:54:10 UTC |
| 00a9cf3 | fenderglass | 22 June 2014, 10:41:11 UTC | site name | 22 June 2014, 10:41:11 UTC |
| 2265950 | fenderglass | 22 June 2014, 10:39:31 UTC | version up | 22 June 2014, 10:39:31 UTC |
| 2e27c91 | fenderglass | 22 June 2014, 10:37:19 UTC | copyright notice + some comments | 22 June 2014, 10:37:19 UTC |
| 80c7799 | fenderglass | 22 June 2014, 09:40:57 UTC | some refactoring and improvements | 22 June 2014, 09:40:57 UTC |
| 50b4b83 | fenderglass | 22 June 2014, 00:22:38 UTC | Merge branch 'master' of https://github.com/fenderglass/Ragout | 22 June 2014, 00:22:38 UTC |
| 4407bc8 | fenderglass | 22 June 2014, 00:20:15 UTC | macos fix | 22 June 2014, 00:20:15 UTC |
| 55078f9 | fenderglass | 21 June 2014, 23:17:28 UTC | minor | 21 June 2014, 23:17:28 UTC |
| 93f1995 | fenderglass | 21 June 2014, 22:51:04 UTC | C++0x | 21 June 2014, 22:51:04 UTC |
| e26a6e8 | fenderglass | 21 June 2014, 22:47:47 UTC | Makefiles | 21 June 2014, 22:47:47 UTC |
| 0520321 | fenderglass | 21 June 2014, 21:59:27 UTC | minor changes, unneeded scripts removed | 21 June 2014, 21:59:27 UTC |
| 8da35dc | fenderglass | 21 June 2014, 09:20:51 UTC | oups | 21 June 2014, 09:20:51 UTC |
| 66fe2be | fenderglass | 21 June 2014, 09:17:16 UTC | newick parser | 21 June 2014, 09:17:16 UTC |
| 7059a3e | fenderglass | 21 June 2014, 09:11:58 UTC | installation script fix | 21 June 2014, 09:11:58 UTC |
| 9dbde54 | fenderglass | 20 June 2014, 20:38:22 UTC | usage improved | 20 June 2014, 20:38:22 UTC |
| ff7fe5d | fenderglass | 20 June 2014, 20:34:41 UTC | another one | 20 June 2014, 20:34:41 UTC |
| 96d75db | fenderglass | 20 June 2014, 20:32:52 UTC | small fix | 20 June 2014, 20:32:52 UTC |
| 5a278a3 | fenderglass | 20 June 2014, 20:27:38 UTC | installation script fix | 20 June 2014, 20:27:38 UTC |
| 4a8415c | fenderglass | 20 June 2014, 17:16:35 UTC | driver script changed a bt | 20 June 2014, 17:16:35 UTC |
| debf51a | fenderglass | 20 June 2014, 17:06:07 UTC | minor | 20 June 2014, 17:06:07 UTC |
| f82c6c7 | fenderglass | 20 June 2014, 16:23:54 UTC | fasta i/o without biopython | 20 June 2014, 16:23:54 UTC |
| 3cdebcc | fenderglass | 20 June 2014, 14:15:06 UTC | back to simple distribution, networkx incorporated | 20 June 2014, 14:15:06 UTC |
| 12f0675 | fenderglass | 19 June 2014, 09:16:47 UTC | minor things | 19 June 2014, 09:16:47 UTC |
| 021ea16 | fenderglass | 19 June 2014, 08:26:01 UTC | no more static linking | 19 June 2014, 08:26:01 UTC |
| a4451b2 | fenderglass | 18 June 2014, 20:22:46 UTC | distance estimation with overlap graph | 18 June 2014, 20:22:46 UTC |
| 9671514 | fenderglass | 18 June 2014, 14:53:29 UTC | distance estimation | 18 June 2014, 14:53:29 UTC |
| 0399e58 | fenderglass | 17 June 2014, 21:43:47 UTC | -pypi | 17 June 2014, 21:43:47 UTC |
| b5f43a4 | fenderglass | 17 June 2014, 21:43:24 UTC | install docs | 17 June 2014, 21:43:24 UTC |
| 8b18060 | fenderglass | 17 June 2014, 21:30:58 UTC | changed exec name | 17 June 2014, 21:30:58 UTC |
| 3e09bf4 | fenderglass | 16 June 2014, 16:51:17 UTC | small fixes | 16 June 2014, 16:51:17 UTC |
| de4c0c0 | fenderglass | 02 June 2014, 13:36:38 UTC | scripts renamed | 02 June 2014, 13:36:38 UTC |
| b7d76f8 | fenderglass | 02 June 2014, 13:22:44 UTC | synteny blocks with coordinates | 02 June 2014, 13:22:44 UTC |
| b65f81b | fenderglass | 31 May 2014, 17:46:03 UTC | minor usage fix | 31 May 2014, 17:46:03 UTC |
| 9eada68 | fenderglass | 31 May 2014, 17:36:04 UTC | few fixes | 31 May 2014, 17:36:04 UTC |
| 4b163c5 | fenderglass | 30 May 2014, 21:47:05 UTC | fixed ecoli recipe | 30 May 2014, 21:47:05 UTC |
| ef9d49d | fenderglass | 28 May 2014, 20:40:13 UTC | site name | 28 May 2014, 20:40:13 UTC |
| 1fec816 | fenderglass | 28 May 2014, 12:38:26 UTC | documentation updated | 28 May 2014, 12:38:26 UTC |
| 821cb4e | fenderglass | 28 May 2014, 10:30:37 UTC | fix for str -> bool casting | 28 May 2014, 10:30:37 UTC |
| c1cf33b | fenderglass | 27 May 2014, 17:30:11 UTC | new recipe format | 27 May 2014, 17:30:11 UTC |
| e0e85ea | fenderglass | 27 May 2014, 15:42:46 UTC | small fixes in debug report | 27 May 2014, 15:42:46 UTC |
| eab6cb6 | fenderglass | 26 May 2014, 10:00:20 UTC | license added, small fixes | 26 May 2014, 10:00:20 UTC |
| 2c286df | fenderglass | 25 May 2014, 09:01:35 UTC | updated cholerae alignment | 25 May 2014, 09:01:35 UTC |
| 098e67b | fenderglass | 24 May 2014, 20:34:15 UTC | fixed bug with chr names containing dots | 24 May 2014, 20:34:15 UTC |
| 81c4077 | fenderglass | 24 May 2014, 10:51:06 UTC | Merge branch 'devel' of github.com:fenderglass/Ragout into devel | 24 May 2014, 10:51:06 UTC |
| 0db0909 | fenderglass | 24 May 2014, 10:49:41 UTC | fixed debug statistics | 24 May 2014, 10:49:41 UTC |
| 8910a6f | AvdeevPavel | 23 May 2014, 21:27:25 UTC | My fix debug report and add my_has_path function. Maybe modificate to return len path. | 23 May 2014, 21:27:25 UTC |
| c7cf686 | fenderglass | 23 May 2014, 20:36:19 UTC | infinity edges to correctly ork with chromosome ends | 23 May 2014, 20:36:19 UTC |
| 366f95a | fenderglass | 21 May 2014, 08:12:16 UTC | scripts updated | 21 May 2014, 08:12:16 UTC |
| dc47ed0 | AvdeevPavel | 20 May 2014, 20:03:51 UTC | Add inversion scrypt | 20 May 2014, 20:03:51 UTC |
| 46ac790 | fenderglass | 19 May 2014, 22:46:54 UTC | manuals updated | 19 May 2014, 22:46:54 UTC |
| 59592d4 | fenderglass | 19 May 2014, 14:08:17 UTC | REFS removed from config | 19 May 2014, 14:08:17 UTC |
| 0805c25 | fenderglass | 19 May 2014, 11:57:22 UTC | only maximum overlaps | 19 May 2014, 11:57:22 UTC |
| 8e21fdb | fenderglass | 17 May 2014, 22:12:25 UTC | oups | 17 May 2014, 22:12:25 UTC |
| 0201cd2 | fenderglass | 17 May 2014, 22:03:12 UTC | faster merging | 17 May 2014, 22:03:12 UTC |
| a0406aa | fenderglass | 17 May 2014, 21:25:32 UTC | Merge with pavel_devel | 17 May 2014, 21:25:32 UTC |
| 682e0c3 | fenderglass | 17 May 2014, 21:13:36 UTC | examples updated | 17 May 2014, 21:13:36 UTC |
| 87591fa | fenderglass | 17 May 2014, 15:24:23 UTC | maf synteny backend | 17 May 2014, 15:24:23 UTC |
| 130f0e6 | fenderglass | 17 May 2014, 13:41:10 UTC | Dima's FM-index incorporated | 17 May 2014, 13:41:10 UTC |
| 4d6ff67 | AvdeevPavel | 16 May 2014, 20:15:26 UTC | Add my_all_simple_path function | 16 May 2014, 20:15:26 UTC |
