| 4b42dde | fenderglass | 26 April 2014, 05:29:56 UTC | instal | 26 April 2014, 05:29:56 UTC |
| c88cc53 | fenderglass | 26 April 2014, 05:18:40 UTC | docs updated | 26 April 2014, 05:18:40 UTC |
| b9c0c95 | fenderglass | 17 April 2014, 12:48:24 UTC | oups | 17 April 2014, 12:48:24 UTC |
| fb0a2ea | fenderglass | 17 April 2014, 12:47:54 UTC | cross-ilnks | 17 April 2014, 12:47:54 UTC |
| 6e2322e | fenderglass | 17 April 2014, 11:45:31 UTC | added link to install-sibelia.py | 17 April 2014, 11:45:31 UTC |
| 78d31da | fenderglass | 17 April 2014, 11:35:23 UTC | uploading to PyPI | 17 April 2014, 11:35:23 UTC |
| 89136a4 | fenderglass | 17 April 2014, 09:34:17 UTC | added setuptools bootstrap, installation script improved | 17 April 2014, 09:34:17 UTC |
| fbf60af | fenderglass | 16 April 2014, 15:20:14 UTC | oups | 16 April 2014, 15:20:14 UTC |
| 0feea83 | fenderglass | 16 April 2014, 15:18:29 UTC | compilation under gcc46 | 16 April 2014, 15:18:29 UTC |
| 4a5248c | fenderglass | 16 April 2014, 12:39:29 UTC | some fixes | 16 April 2014, 12:39:29 UTC |
| 2ae2282 | fenderglass | 15 April 2014, 15:09:40 UTC | v0.2b | 15 April 2014, 15:09:40 UTC |
| 15e9dbf | fenderglass | 15 April 2014, 14:18:41 UTC | removed deprecated code | 15 April 2014, 14:18:41 UTC |
| 0672c97 | fenderglass | 15 April 2014, 12:18:59 UTC | inplace usage option | 15 April 2014, 12:18:59 UTC |
| 368a7d8 | fenderglass | 15 April 2014, 10:49:28 UTC | package fix | 15 April 2014, 10:49:28 UTC |
| fc81a29 | fenderglass | 14 April 2014, 20:38:07 UTC | python package | 14 April 2014, 20:38:07 UTC |
| fe7d04c | fenderglass | 14 April 2014, 17:10:42 UTC | c++ extensions catch Ctr-C; an attemt to create setup script | 14 April 2014, 17:10:42 UTC |
| 1491a04 | fenderglass | 12 April 2014, 09:27:59 UTC | example changed, sibelia now works with --fine | 12 April 2014, 09:27:59 UTC |
| ff62ec1 | fenderglass | 10 April 2014, 15:09:57 UTC | exiting on error in synteny backend | 10 April 2014, 15:09:57 UTC |
| 07f50cb | fenderglass | 08 April 2014, 18:07:03 UTC | more pretty makefile | 08 April 2014, 18:07:03 UTC |
| 7880dfe | fenderglass | 08 April 2014, 17:53:41 UTC | manuals updated | 08 April 2014, 17:53:41 UTC |
| 8076599 | fenderglass | 08 April 2014, 17:19:32 UTC | checking python version | 08 April 2014, 17:19:32 UTC |
| ab7b582 | fenderglass | 08 April 2014, 16:45:03 UTC | scripts now supports both 2 and 3 python version | 08 April 2014, 16:45:03 UTC |
| 1fbdc34 | fenderglass | 08 April 2014, 08:40:05 UTC | one more fix for c++0x | 08 April 2014, 08:40:05 UTC |
| c29e7af | fenderglass | 08 April 2014, 08:23:30 UTC | fix for cmpilation under gcc4.6 + usage updated | 08 April 2014, 08:23:30 UTC |
| ff7da05 | fenderglass | 07 April 2014, 17:00:16 UTC | cpp maf2synteny implementation incorporated + some fixes inside | 07 April 2014, 17:00:16 UTC |
| 6d64e70 | fenderglass | 03 April 2014, 21:18:57 UTC | maf2synteny speedup, memory leaks fixed | 03 April 2014, 21:18:57 UTC |
| f2b439e | fenderglass | 01 April 2014, 16:42:18 UTC | parameter fixes | 01 April 2014, 16:42:18 UTC |
| feaa357 | fenderglass | 01 April 2014, 16:09:22 UTC | interpreter changed to python2 | 01 April 2014, 16:09:22 UTC |
| 14d5993 | fenderglass | 01 April 2014, 16:08:39 UTC | some backported things | 01 April 2014, 16:08:39 UTC |
| 41974d7 | fenderglass | 01 April 2014, 16:08:12 UTC | maf2synteny finally works | 01 April 2014, 16:08:12 UTC |
| 915d1d1 | fenderglass | 31 March 2014, 17:23:59 UTC | rewritten | 31 March 2014, 17:23:59 UTC |
| a95bc0e | fenderglass | 28 March 2014, 17:09:05 UTC | path compression and bulge removal seems to be working | 28 March 2014, 17:09:05 UTC |
| d3368d3 | fenderglass | 26 March 2014, 14:50:15 UTC | maf parser partially implemented | 26 March 2014, 14:50:15 UTC |
| 298d2be | fenderglass | 26 March 2014, 13:26:12 UTC | compression algorithms in c++ | 26 March 2014, 13:26:12 UTC |
| ab795cc | fenderglass | 25 March 2014, 17:03:08 UTC | started porting maf2synteny on c++ | 25 March 2014, 17:03:08 UTC |
| c4d61e9 | fenderglass | 24 March 2014, 12:24:02 UTC | more refactoring | 24 March 2014, 12:24:02 UTC |
| 89ed1ad | fenderglass | 21 March 2014, 15:59:11 UTC | small fix | 21 March 2014, 15:59:11 UTC |
| be3a049 | fenderglass | 21 March 2014, 15:34:21 UTC | ovelap tools as .so library. incorporated into pipeline | 21 March 2014, 15:34:21 UTC |
| 66138dc | fenderglass | 21 March 2014, 12:59:50 UTC | repo reorganisation | 21 March 2014, 12:59:50 UTC |
| e6e1dd0 | fenderglass | 20 March 2014, 20:38:01 UTC | started repo reorganisation. added overlap sources | 20 March 2014, 20:38:01 UTC |
| e95c01f | fenderglass | 18 March 2014, 16:53:47 UTC | non-recursive overlap graph construction, additional filters for nucmer alignment | 18 March 2014, 16:53:47 UTC |
| cc80639 | fenderglass | 14 March 2014, 15:50:43 UTC | strand checking | 14 March 2014, 15:50:43 UTC |
| ecabefa | fenderglass | 14 March 2014, 13:29:05 UTC | debug output improved | 14 March 2014, 13:29:05 UTC |
| 388d840 | fenderglass | 11 March 2014, 16:10:25 UTC | fancy graph pictures | 11 March 2014, 16:10:25 UTC |
| f6ec1fc | fenderglass | 10 March 2014, 22:55:37 UTC | phylogenetic tree output. known edges are added into BG. test script improved a bit | 10 March 2014, 22:55:37 UTC |
| ac511e2 | kolmogorov | 09 March 2014, 17:15:41 UTC | small fix for cactus | 09 March 2014, 17:15:41 UTC |
| c300ebd | fenderglass | 09 March 2014, 17:14:34 UTC | test script changed a bit | 09 March 2014, 17:14:34 UTC |
| 44cc310 | fenderglass | 06 March 2014, 13:02:33 UTC | maf2synteny fixes | 06 March 2014, 13:02:33 UTC |
| 4ff956e | fenderglass | 27 February 2014, 10:16:01 UTC | reuse of existing sibelia/cacts results | 27 February 2014, 10:16:01 UTC |
| 3c35710 | fenderglass | 26 February 2014, 17:21:39 UTC | iterative synteny recovery | 26 February 2014, 17:21:39 UTC |
| 1582e4c | fenderglass | 24 February 2014, 18:30:55 UTC | merge with master | 24 February 2014, 18:30:55 UTC |
| aecacb2 | fenderglass | 24 February 2014, 18:27:34 UTC | circular mode | 24 February 2014, 18:27:34 UTC |
| 0f746a2 | fenderglass | 24 February 2014, 17:57:51 UTC | finding fragmented synteny blocks | 24 February 2014, 17:57:51 UTC |
| 7739e2a | fenderglass | 18 February 2014, 17:46:26 UTC | more accurate bulges removal | 18 February 2014, 17:46:26 UTC |
| bda2b24 | fenderglass | 17 February 2014, 20:30:10 UTC | cactus + syntany backends | 17 February 2014, 20:30:10 UTC |
| 67c4322 | fenderglass | 14 February 2014, 15:25:38 UTC | adhoc fixes for bulge removal | 14 February 2014, 15:25:38 UTC |
| bf8bba8 | fenderglass | 13 February 2014, 15:04:48 UTC | small fix | 13 February 2014, 15:04:48 UTC |
| d8f37bd | fenderglass | 13 February 2014, 14:49:56 UTC | merge | 13 February 2014, 14:49:56 UTC |
| 6dc4c93 | fenderglass | 13 February 2014, 14:41:24 UTC | reorganization | 13 February 2014, 14:41:24 UTC |
| 519f811 | fenderglass | 13 February 2014, 14:38:08 UTC | bulges removal | 13 February 2014, 14:38:08 UTC |
| 4a6d289 | fenderglass | 12 February 2014, 15:32:49 UTC | bulges | 12 February 2014, 15:32:49 UTC |
| 97487aa | fenderglass | 12 February 2014, 12:10:36 UTC | another fix | 12 February 2014, 12:10:36 UTC |
| 2260cda | fenderglass | 12 February 2014, 12:09:32 UTC | usage fix | 12 February 2014, 12:09:32 UTC |
| 4633c80 | fenderglass | 12 February 2014, 12:07:39 UTC | standalone installer | 12 February 2014, 12:07:39 UTC |
| 88b01f9 | fenderglass | 11 February 2014, 17:02:24 UTC | Sibelia installer | 11 February 2014, 17:02:24 UTC |
| d6a6f4f | fenderglass | 11 February 2014, 15:42:29 UTC | minor change | 11 February 2014, 15:42:29 UTC |
| a49a37b | fenderglass | 11 February 2014, 13:22:19 UTC | maf alignment filtering | 11 February 2014, 13:22:19 UTC |
| 36ba067 | fenderglass | 10 February 2014, 15:03:23 UTC | coordinates tracking changed | 10 February 2014, 15:03:23 UTC |
| 16044a1 | fenderglass | 07 February 2014, 15:28:58 UTC | some changes | 07 February 2014, 15:28:58 UTC |
| 01df032 | fenderglass | 06 February 2014, 19:41:29 UTC | docs | 06 February 2014, 19:41:29 UTC |
| 9d2077f | fenderglass | 06 February 2014, 16:40:18 UTC | fixed bug with tandem repeat | 06 February 2014, 16:40:18 UTC |
| dd77e07 | fenderglass | 05 February 2014, 15:25:22 UTC | maf2synteny | 05 February 2014, 15:25:22 UTC |
| a976466 | fenderglass | 04 February 2014, 15:56:05 UTC | lcb generation scripts | 04 February 2014, 15:56:05 UTC |
| 43c1081 | fenderglass | 29 January 2014, 11:28:29 UTC | comments in code | 29 January 2014, 11:28:29 UTC |
| 5818c57 | fenderglass | 19 January 2014, 08:12:23 UTC | supplementary update | 19 January 2014, 08:12:23 UTC |
| e438e71 | fenderglass | 16 January 2014, 11:06:32 UTC | ismb2014 | 16 January 2014, 11:06:32 UTC |
| 54ec831 | fenderglass | 15 January 2014, 22:20:24 UTC | sibelia path fix | 15 January 2014, 22:20:24 UTC |
| b0a0b5a | fenderglass | 14 January 2014, 10:44:45 UTC | small usage update | 14 January 2014, 10:44:45 UTC |
| 2e5adc7 | fenderglass | 14 January 2014, 09:53:13 UTC | install and usage | 14 January 2014, 09:53:13 UTC |
| c700bcf | fenderglass | 14 January 2014, 08:46:45 UTC | readme | 14 January 2014, 08:46:45 UTC |
| 43b5052 | fenderglass | 04 January 2014, 14:37:47 UTC | optimization | 04 January 2014, 14:37:47 UTC |
| a52dcb8 | fenderglass | 04 January 2014, 11:30:48 UTC | more accurate handling of known adjacencies | 04 January 2014, 11:30:48 UTC |
| fac714c | fenderglass | 25 December 2013, 15:44:43 UTC | small fix | 25 December 2013, 15:44:43 UTC |
| b9ad65b | fenderglass | 19 December 2013, 15:26:25 UTC | test script updated, new coord files | 19 December 2013, 15:26:25 UTC |
| 6a6951c | fenderglass | 11 December 2013, 14:17:17 UTC | bugfixes in assembly graph | 11 December 2013, 14:17:17 UTC |
| 313f6be | fenderglass | 09 December 2013, 17:58:22 UTC | examples fixed | 09 December 2013, 17:58:22 UTC |
| ccf92fa | fenderglass | 09 December 2013, 15:12:08 UTC | small ifx | 09 December 2013, 15:12:08 UTC |
| e2345a4 | fenderglass | 26 November 2013, 15:39:10 UTC | some logging | 26 November 2013, 15:39:10 UTC |
| ab25327 | fenderglass | 26 November 2013, 13:40:46 UTC | more reliable parsers | 26 November 2013, 13:40:46 UTC |
| db29c03 | fenderglass | 21 November 2013, 12:31:54 UTC | new dot parser + nucmer format fixes | 21 November 2013, 12:31:54 UTC |
| d7ca7ca | fenderglass | 18 November 2013, 20:54:54 UTC | usage og known adjacencies | 18 November 2013, 20:54:54 UTC |
| b178423 | fenderglass | 18 November 2013, 14:04:20 UTC | USAGE improved | 18 November 2013, 14:04:20 UTC |
| 0c5e62d | fenderglass | 18 November 2013, 13:39:32 UTC | new example | 18 November 2013, 13:39:32 UTC |
| 7ff9793 | fenderglass | 18 November 2013, 13:30:30 UTC | sankoff algorithm | 18 November 2013, 13:30:30 UTC |
| c5e68c1 | fenderglass | 18 November 2013, 11:16:35 UTC | new script | 18 November 2013, 11:16:35 UTC |
| 3a9fa50 | fenderglass | 18 November 2013, 11:14:53 UTC | aureus config fix | 18 November 2013, 11:14:53 UTC |
| 9808b68 | fenderglass | 12 November 2013, 13:14:42 UTC | fixed example configs | 12 November 2013, 13:14:42 UTC |
| a599a30 | fenderglass | 11 November 2013, 11:43:38 UTC | fixed huge phylogeny bugs | 11 November 2013, 11:43:38 UTC |
| 4cb0fea | fenderglass | 11 November 2013, 00:00:51 UTC | debug output | 11 November 2013, 00:00:51 UTC |
| a020c19 | fenderglass | 07 November 2013, 14:05:09 UTC | debrujin refinement | 07 November 2013, 14:05:09 UTC |
