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https://github.com/fenderglass/Ragout
05 April 2024, 18:02:13 UTC
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sort by:
RevisionAuthorDateMessageCommit Date
d3bc49a fenderglass22 June 2014, 15:21:31 UTCfixed debug directory creation22 June 2014, 15:21:31 UTC
848cefa fenderglass22 June 2014, 11:18:27 UTCmammals notice22 June 2014, 11:18:27 UTC
b0c4871 fenderglass22 June 2014, 10:58:46 UTCoups22 June 2014, 10:58:46 UTC
ac052d0 fenderglass22 June 2014, 10:55:55 UTCsmall fix22 June 2014, 10:55:55 UTC
bf19ec7 fenderglass22 June 2014, 10:54:10 UTCassemblers mentioned22 June 2014, 10:54:10 UTC
00a9cf3 fenderglass22 June 2014, 10:41:11 UTCsite name22 June 2014, 10:41:11 UTC
2265950 fenderglass22 June 2014, 10:39:31 UTCversion up22 June 2014, 10:39:31 UTC
2e27c91 fenderglass22 June 2014, 10:37:19 UTCcopyright notice + some comments22 June 2014, 10:37:19 UTC
80c7799 fenderglass22 June 2014, 09:40:57 UTCsome refactoring and improvements22 June 2014, 09:40:57 UTC
55078f9 fenderglass21 June 2014, 23:17:28 UTCminor21 June 2014, 23:17:28 UTC
93f1995 fenderglass21 June 2014, 22:51:04 UTCC++0x21 June 2014, 22:51:04 UTC
e26a6e8 fenderglass21 June 2014, 22:47:47 UTCMakefiles21 June 2014, 22:47:47 UTC
0520321 fenderglass21 June 2014, 21:59:27 UTCminor changes, unneeded scripts removed21 June 2014, 21:59:27 UTC
8da35dc fenderglass21 June 2014, 09:20:51 UTCoups21 June 2014, 09:20:51 UTC
66fe2be fenderglass21 June 2014, 09:17:16 UTCnewick parser21 June 2014, 09:17:16 UTC
7059a3e fenderglass21 June 2014, 09:11:58 UTCinstallation script fix21 June 2014, 09:11:58 UTC
9dbde54 fenderglass20 June 2014, 20:38:22 UTCusage improved20 June 2014, 20:38:22 UTC
ff7fe5d fenderglass20 June 2014, 20:34:41 UTCanother one20 June 2014, 20:34:41 UTC
96d75db fenderglass20 June 2014, 20:32:52 UTCsmall fix20 June 2014, 20:32:52 UTC
5a278a3 fenderglass20 June 2014, 20:27:38 UTCinstallation script fix20 June 2014, 20:27:38 UTC
4a8415c fenderglass20 June 2014, 17:16:35 UTCdriver script changed a bt20 June 2014, 17:16:35 UTC
debf51a fenderglass20 June 2014, 17:06:07 UTCminor20 June 2014, 17:06:07 UTC
f82c6c7 fenderglass20 June 2014, 16:23:54 UTCfasta i/o without biopython20 June 2014, 16:23:54 UTC
3cdebcc fenderglass20 June 2014, 14:15:06 UTCback to simple distribution, networkx incorporated20 June 2014, 14:15:06 UTC
12f0675 fenderglass19 June 2014, 09:16:47 UTCminor things19 June 2014, 09:16:47 UTC
021ea16 fenderglass19 June 2014, 08:26:01 UTCno more static linking19 June 2014, 08:26:01 UTC
a4451b2 fenderglass18 June 2014, 20:22:46 UTCdistance estimation with overlap graph18 June 2014, 20:22:46 UTC
9671514 fenderglass18 June 2014, 14:53:29 UTCdistance estimation18 June 2014, 14:53:29 UTC
0399e58 fenderglass17 June 2014, 21:43:47 UTC-pypi17 June 2014, 21:43:47 UTC
b5f43a4 fenderglass17 June 2014, 21:43:24 UTCinstall docs17 June 2014, 21:43:24 UTC
8b18060 fenderglass17 June 2014, 21:30:58 UTCchanged exec name17 June 2014, 21:30:58 UTC
3e09bf4 fenderglass16 June 2014, 16:51:17 UTCsmall fixes16 June 2014, 16:51:17 UTC
de4c0c0 fenderglass02 June 2014, 13:36:38 UTCscripts renamed02 June 2014, 13:36:38 UTC
b7d76f8 fenderglass02 June 2014, 13:22:44 UTCsynteny blocks with coordinates02 June 2014, 13:22:44 UTC
b65f81b fenderglass31 May 2014, 17:46:03 UTCminor usage fix31 May 2014, 17:46:03 UTC
9eada68 fenderglass31 May 2014, 17:36:04 UTCfew fixes31 May 2014, 17:36:04 UTC
4b163c5 fenderglass30 May 2014, 21:47:05 UTCfixed ecoli recipe30 May 2014, 21:47:05 UTC
ef9d49d fenderglass28 May 2014, 20:40:13 UTCsite name28 May 2014, 20:40:13 UTC
1fec816 fenderglass28 May 2014, 12:38:26 UTCdocumentation updated28 May 2014, 12:38:26 UTC
821cb4e fenderglass28 May 2014, 10:30:37 UTCfix for str -> bool casting28 May 2014, 10:30:37 UTC
c1cf33b fenderglass27 May 2014, 17:30:11 UTCnew recipe format27 May 2014, 17:30:11 UTC
e0e85ea fenderglass27 May 2014, 15:42:46 UTCsmall fixes in debug report27 May 2014, 15:42:46 UTC
eab6cb6 fenderglass26 May 2014, 10:00:20 UTClicense added, small fixes26 May 2014, 10:00:20 UTC
2c286df fenderglass25 May 2014, 09:01:35 UTCupdated cholerae alignment25 May 2014, 09:01:35 UTC
098e67b fenderglass24 May 2014, 20:34:15 UTCfixed bug with chr names containing dots24 May 2014, 20:34:15 UTC
81c4077 fenderglass24 May 2014, 10:51:06 UTCMerge branch 'devel' of github.com:fenderglass/Ragout into devel24 May 2014, 10:51:06 UTC
0db0909 fenderglass24 May 2014, 10:49:41 UTCfixed debug statistics24 May 2014, 10:49:41 UTC
8910a6f AvdeevPavel23 May 2014, 21:27:25 UTCMy fix debug report and add my_has_path function. Maybe modificate to return len path.23 May 2014, 21:27:25 UTC
c7cf686 fenderglass23 May 2014, 20:36:19 UTCinfinity edges to correctly ork with chromosome ends23 May 2014, 20:36:19 UTC
366f95a fenderglass21 May 2014, 08:12:16 UTCscripts updated21 May 2014, 08:12:16 UTC
dc47ed0 AvdeevPavel20 May 2014, 20:03:51 UTCAdd inversion scrypt20 May 2014, 20:03:51 UTC
46ac790 fenderglass19 May 2014, 22:46:54 UTCmanuals updated19 May 2014, 22:46:54 UTC
59592d4 fenderglass19 May 2014, 14:08:17 UTCREFS removed from config19 May 2014, 14:08:17 UTC
0805c25 fenderglass19 May 2014, 11:57:22 UTConly maximum overlaps19 May 2014, 11:57:22 UTC
8e21fdb fenderglass17 May 2014, 22:12:25 UTCoups17 May 2014, 22:12:25 UTC
0201cd2 fenderglass17 May 2014, 22:03:12 UTCfaster merging17 May 2014, 22:03:12 UTC
a0406aa fenderglass17 May 2014, 21:25:32 UTCMerge with pavel_devel17 May 2014, 21:25:32 UTC
682e0c3 fenderglass17 May 2014, 21:13:36 UTCexamples updated17 May 2014, 21:13:36 UTC
87591fa fenderglass17 May 2014, 15:24:23 UTCmaf synteny backend17 May 2014, 15:24:23 UTC
130f0e6 fenderglass17 May 2014, 13:41:10 UTCDima's FM-index incorporated17 May 2014, 13:41:10 UTC
4d6ff67 AvdeevPavel16 May 2014, 20:15:26 UTCAdd my_all_simple_path function16 May 2014, 20:15:26 UTC
b81c52b fenderglass16 May 2014, 16:58:08 UTCnew iterative version of m2s + new recipe format16 May 2014, 16:58:08 UTC
5eeb464 fenderglass15 May 2014, 13:09:00 UTCguessing hidden edges15 May 2014, 13:09:00 UTC
041ca77 fenderglass14 May 2014, 15:23:53 UTCsmall statistics improvement14 May 2014, 15:23:53 UTC
c7960ed fenderglass14 May 2014, 11:23:09 UTCbreakpoint graph partitoning hs slightly changed14 May 2014, 11:23:09 UTC
5046f8e fenderglass14 May 2014, 09:56:13 UTCmanual slightly improved14 May 2014, 09:56:13 UTC
eba64ef fenderglass13 May 2014, 13:30:14 UTCsmall fix13 May 2014, 13:30:14 UTC
efed1df fenderglass13 May 2014, 13:18:57 UTCsome statistics13 May 2014, 13:18:57 UTC
2ff6eec kolmogorov13 May 2014, 12:07:50 UTCparser improved13 May 2014, 12:07:50 UTC
d68a0e0 kolmogorov13 May 2014, 09:20:21 UTCfatser fasta13 May 2014, 09:20:21 UTC
0f7e508 fenderglass13 May 2014, 08:57:50 UTCsome logging13 May 2014, 08:57:50 UTC
5a9ef8f fenderglass12 May 2014, 11:13:56 UTCphylogeny checking before run12 May 2014, 11:13:56 UTC
01de1ff fenderglass12 May 2014, 09:24:02 UTCconfig is now called recipe12 May 2014, 09:24:02 UTC
3be102e AvdeevPavel08 May 2014, 20:13:12 UTCafte rmerge with good version08 May 2014, 20:13:12 UTC
d5d1f2c AvdeevPavel08 May 2014, 20:01:16 UTCexperiment version with buldges08 May 2014, 20:01:16 UTC
716081e fenderglass08 May 2014, 13:57:17 UTCnew permutations naming convention: genome.chomosome08 May 2014, 13:57:17 UTC
34dbfe1 fenderglass07 May 2014, 16:15:26 UTCexecutable name changed07 May 2014, 16:15:26 UTC
83507dc fenderglass07 May 2014, 12:28:12 UTCsmall change07 May 2014, 12:28:12 UTC
1db8c46 fenderglass07 May 2014, 11:41:52 UTCinstallation script without wget07 May 2014, 11:41:52 UTC
458e299 fenderglass04 May 2014, 17:39:58 UTCfixed bug + debug-report noew works with assembly graph04 May 2014, 17:39:58 UTC
dbbae63 fenderglass04 May 2014, 17:14:09 UTCdebrujn graph changed to overlap04 May 2014, 17:14:09 UTC
219b1f7 fenderglass01 May 2014, 10:02:21 UTCdebug-report outputs edges from assembly graph01 May 2014, 10:02:21 UTC
fdd51a3 AvdeevPavel29 April 2014, 13:28:34 UTCAdd new breakpoint graph output29 April 2014, 13:28:34 UTC
c0ff991 fenderglass26 April 2014, 15:48:55 UTCguessing kmer size26 April 2014, 15:48:55 UTC
4b42dde fenderglass26 April 2014, 05:29:56 UTCinstal26 April 2014, 05:29:56 UTC
c88cc53 fenderglass26 April 2014, 05:18:40 UTCdocs updated26 April 2014, 05:18:40 UTC
b9c0c95 fenderglass17 April 2014, 12:48:24 UTCoups17 April 2014, 12:48:24 UTC
fb0a2ea fenderglass17 April 2014, 12:47:54 UTCcross-ilnks17 April 2014, 12:47:54 UTC
6e2322e fenderglass17 April 2014, 11:45:31 UTCadded link to install-sibelia.py17 April 2014, 11:45:31 UTC
78d31da fenderglass17 April 2014, 11:35:23 UTCuploading to PyPI17 April 2014, 11:35:23 UTC
89136a4 fenderglass17 April 2014, 09:34:17 UTCadded setuptools bootstrap, installation script improved17 April 2014, 09:34:17 UTC
fbf60af fenderglass16 April 2014, 15:20:14 UTCoups16 April 2014, 15:20:14 UTC
0feea83 fenderglass16 April 2014, 15:18:29 UTCcompilation under gcc4616 April 2014, 15:18:29 UTC
4a5248c fenderglass16 April 2014, 12:39:29 UTCsome fixes16 April 2014, 12:39:29 UTC
2ae2282 fenderglass15 April 2014, 15:09:40 UTCv0.2b15 April 2014, 15:09:40 UTC
15e9dbf fenderglass15 April 2014, 14:18:41 UTCremoved deprecated code15 April 2014, 14:18:41 UTC
0672c97 fenderglass15 April 2014, 12:18:59 UTCinplace usage option15 April 2014, 12:18:59 UTC
368a7d8 fenderglass15 April 2014, 10:49:28 UTCpackage fix15 April 2014, 10:49:28 UTC
fc81a29 fenderglass14 April 2014, 20:38:07 UTCpython package14 April 2014, 20:38:07 UTC
fe7d04c fenderglass14 April 2014, 17:10:42 UTCc++ extensions catch Ctr-C; an attemt to create setup script14 April 2014, 17:10:42 UTC
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