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https://github.com/blab/mumps-wa-phylodynamics
20 April 2021, 13:07:29 UTC
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RevisionAuthorDateMessageCommit Date
b8358a0 Louise Moncla17 March 2021, 19:25:20 UTCadding in callouts for Wisconsin H and A genomes17 March 2021, 19:25:20 UTC
bdbd6e9 Louise Moncla17 March 2021, 00:57:58 UTCcleaning up exploded tree code17 March 2021, 00:57:58 UTC
f182261 Louise Moncla16 March 2021, 21:44:43 UTCclean up regression notebook16 March 2021, 21:44:43 UTC
bb1a073 Louise Moncla16 March 2021, 19:50:13 UTCadding in notebook for new supplemental figure showing all genotypes tree16 March 2021, 19:50:13 UTC
e19d23f Louise Moncla16 March 2021, 19:30:31 UTCadding in tempest root to tip file16 March 2021, 19:30:31 UTC
3b97034 Louise Moncla16 March 2021, 19:23:18 UTCdeleting old divergence tree data folder16 March 2021, 19:23:18 UTC
240d76c Louise Moncla16 March 2021, 19:22:14 UTCupdating divergence tree plotting notebooks and standardizing strain names16 March 2021, 19:22:14 UTC
178fa50 Louise Moncla16 March 2021, 00:24:13 UTCreplacing strain names with proper ones16 March 2021, 00:24:13 UTC
cacf72a Louise H Moncla14 December 2020, 20:36:09 UTCupdate plotting scripts14 December 2020, 20:36:09 UTC
323978a Louise H Moncla14 December 2020, 20:24:37 UTCadding new phylogeography files14 December 2020, 20:24:37 UTC
d384b40 Louise H Moncla14 December 2020, 19:38:14 UTCremoving old phylogeography files14 December 2020, 19:38:14 UTC
efc9a06 Louise H Moncla10 December 2020, 21:06:58 UTCremoving old metadata file10 December 2020, 21:06:58 UTC
fb1ad15 Louise H Moncla10 December 2020, 21:05:35 UTCupdating with Genbank links and more complete metadata10 December 2020, 21:05:35 UTC
9317596 Louise H Moncla13 October 2020, 00:19:42 UTCadding in subsampled multitype tree files13 October 2020, 00:19:42 UTC
9741723 Louise H Moncla13 October 2020, 00:15:13 UTCadding in more files13 October 2020, 00:15:13 UTC
b496a25 Louise H Moncla12 October 2020, 23:33:18 UTCadding in more files for structured coalescent analyses12 October 2020, 23:33:18 UTC
6957b0b Louise H Moncla12 October 2020, 23:08:24 UTCadd phylogeography files with proper strain names12 October 2020, 23:08:24 UTC
65a470b Louise H Moncla12 October 2020, 23:06:47 UTCremoving old and large files12 October 2020, 23:06:47 UTC
1ab1f40 Louise H Moncla08 October 2020, 00:08:08 UTCadding in mtt output files08 October 2020, 00:08:08 UTC
0347202 Louise H Moncla08 October 2020, 00:05:57 UTCadding in mtt output files08 October 2020, 00:05:57 UTC
e166d3a Louise H Moncla07 October 2020, 23:05:22 UTCadding in mascot output files07 October 2020, 23:05:22 UTC
7cd8284 Louise H Moncla06 October 2020, 23:55:24 UTCupdate README with accession numbers and links06 October 2020, 23:55:24 UTC
5376eae Louise H Moncla06 October 2020, 23:42:09 UTCadding in a note about why theere are missing metadata fields in the xmls06 October 2020, 23:42:09 UTC
bf52737 Louise H Moncla06 October 2020, 23:38:27 UTCadding in beast input files without metadata06 October 2020, 23:38:27 UTC
815fadc Louise H Moncla06 October 2020, 23:36:01 UTCadd structured coalescent plotting scripts06 October 2020, 23:36:01 UTC
8eed01c Louise H Moncla06 October 2020, 23:17:57 UTCadd in phylogeography beast xmls and output files06 October 2020, 23:17:57 UTC
813814c Louise H Moncla06 October 2020, 21:13:07 UTCadding in rarefaction plotting scripts and results files06 October 2020, 21:13:07 UTC
ee40054 Louise H Moncla06 October 2020, 21:05:35 UTCadding in plotting scripts for phylogeography06 October 2020, 21:05:35 UTC
0b53815 Louise H Moncla06 October 2020, 20:47:01 UTCadding in a baltic version06 October 2020, 20:47:01 UTC
5f95acb Louise H Moncla06 October 2020, 20:46:38 UTCremoving baltic06 October 2020, 20:46:38 UTC
6518bfe Louise H Moncla06 October 2020, 20:44:53 UTCadd in data and scripts for divergence tree analyses and regression06 October 2020, 20:44:53 UTC
f0c6e83 Louise H Moncla06 October 2020, 20:34:00 UTCadding in auspice files and baltic version06 October 2020, 20:34:00 UTC
1255c8e Louise H Moncla06 October 2020, 19:49:05 UTCadding public metadata to repository06 October 2020, 19:49:05 UTC
02e1d8e Louise H Moncla06 October 2020, 19:47:15 UTCinitial commit06 October 2020, 19:47:15 UTC
15bef2a Louise H Moncla06 October 2020, 19:46:42 UTCEmpty06 October 2020, 19:46:42 UTC
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