https://github.com/GPflow/GPflow

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Revision Author Date Message Commit Date
c5e7574 Remove old script 16 February 2022, 19:15:36 UTC
0118702 Add hetGPR notebook 16 February 2022, 19:14:46 UTC
0ef6c62 Fix HetGPR arguments 01 February 2022, 11:58:46 UTC
7922d48 Merge branch 'develop' into fergus/linear 01 February 2022, 11:51:24 UTC
b52f9e7 Make mypy a bit more strict, and fix revealed problems. (#1766) 31 January 2022, 10:50:34 UTC
f70e04d Clean up posterior caching code. (#1763) 27 January 2022, 16:51:57 UTC
6fb65a0 Add initial code for shape checking. (#1760) 26 January 2022, 14:46:22 UTC
665a5c9 Install everything in one pip command, to better handle dependency version resolution. (#1764) 26 January 2022, 11:58:07 UTC
32b9ded Make dataclasses dependency conditional at install time (#1759) * Make dataclasses dependency conditional at install time Ensures dataclasses is not treated as a dependency of the "any" wheel on Python 3.7+ Co-authored-by: Jesper Nielsen <44195043+jesnie@users.noreply.github.com> 24 January 2022, 11:40:37 UTC
435dfcb Rapela simplify calc psi in elbo and predict_f (#1755) * Fixed typo in SGPR equation * Removed uncessary sigmas in BayesianGPLVM Co-authored-by: st-- <st--@users.noreply.github.com> Co-authored-by: Jesper Nielsen <44195043+jesnie@users.noreply.github.com> 24 January 2022, 10:51:40 UTC
6f7c111 Bump ipython from 7.18.1 to 7.31.1 in /doc (#1762) Bumps [ipython](https://github.com/ipython/ipython) from 7.18.1 to 7.31.1. - [Release notes](https://github.com/ipython/ipython/releases) - [Commits](https://github.com/ipython/ipython/compare/7.18.1...7.31.1) --- updated-dependencies: - dependency-name: ipython dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> 24 January 2022, 10:03:37 UTC
501b8c2 Bump version to 2.3.1 (#1756) 20 January 2022, 10:58:20 UTC
cd0b59e Merge branch 'develop' into fergus/linear 07 January 2022, 14:11:14 UTC
1a2c9d2 Andrewl/fix gpr posterior leading dim (#1747) * add leading dimension use case to test_gpr_posterior.py * address leading dimension issues in GPRPosterior * change release notes * make test use more leading dims * handle more leading dims * fix test dimensions * Remove 'EllipsisType = type(...)' which was causing mypy issues. 05 January 2022, 11:07:06 UTC
ed28523 Handle unconnected gradients in gpflow.optimizers.Scipy. (#1745) Handle unconnected gradients in gpflow.optimizers.Scipy. 14 December 2021, 11:03:17 UTC
f3570cb Fix #1733 (#1734) 03 December 2021, 16:30:55 UTC
7ec8bb3 Adjust test dependencies. (#1743) 30 November 2021, 12:17:33 UTC
e7c26a4 Fix broken docs generation triggering. (#1744) 30 November 2021, 11:58:11 UTC
927a6b6 Set kernelspec on cplb.pct.py. (#1742) 29 November 2021, 16:32:07 UTC
e126de0 Add test requirements to make dev-install. (#1737) 29 November 2021, 12:18:07 UTC
c692b65 Update CircleCi build to use next-gen Docker images. (#1740) 29 November 2021, 11:19:51 UTC
1892eb1 Fix broken link in README.md. (#1736) Fix broken link in README.md. 29 November 2021, 10:54:51 UTC
ccfa49b Fix broken CircleCi build. (#1738) Fix broken CircleCi build. 29 November 2021, 10:12:39 UTC
d088c2c docs/README.md: explain how to run notebooks locally (#1729) Closes https://github.com/GPflow/GPflow/issues/1674 27 October 2021, 08:05:54 UTC
5442883 attempt to fix #1721 (#1727) 26 October 2021, 09:03:27 UTC
d015286 fix broken link (#1718) 26 October 2021, 09:00:11 UTC
30a689d Merge pull request #1726 from GPflow/st/develop-master-merge-oct2021 Merge master back into develop 26 October 2021, 08:59:21 UTC
c1716a0 Merge branch 'master' into st/develop-master-merge-oct2021 26 October 2021, 08:36:00 UTC
ed6acf5 John/release 2.3.0 (#1716) 21 September 2021, 20:30:14 UTC
5267b72 Andrewl cache sgpr (#1711) * set up posterior class (plus rename old class) * Some refactoring to improve readability and efficiency (mainly of tests). Co-authored-by: Alessandro Vullo <killm9m1@yahoo.it> Co-authored-by: Alessandro Vullo <alessandro.vullo@prowler.io> 21 September 2021, 16:06:53 UTC
99a0ecb Fix tests which fail with TensorFlow 2.6.0 (#1714) 21 September 2021, 13:56:42 UTC
bf8e2b9 fix script 15 September 2021, 16:31:26 UTC
d11994d Merge pull request #1710 from GPflow/fergus/hetgpr Start to simplify hetgpr 15 September 2021, 15:21:11 UTC
01a1eaf Simplify 15 September 2021, 15:20:18 UTC
e4bf1bf Start to simplify hetgpr 09 September 2021, 13:12:02 UTC
49a8cd8 Conjugate Gradient Lower Bound (#1706) 02 September 2021, 14:27:25 UTC
348c75d Update SGPR_notes.md (fix a mistake in derivations) (#1688) 27 August 2021, 19:58:26 UTC
f008f84 notebook fix from #1706 (#1709) 27 August 2021, 16:33:59 UTC
ca89ac6 Merge pull request #1707 from GPflow/john/linear Use HeteroskedasticTFP likelihood 23 August 2021, 11:38:28 UTC
bf3bd5f Use HeteroskedasticTFP likelihood 23 August 2021, 09:48:13 UTC
7917b42 Fix lml evaluation of het_gpr 29 July 2021, 16:48:39 UTC
a0a3439 Add script 29 July 2021, 14:47:43 UTC
91b640b Enabled predictions for hetGPR 29 July 2021, 14:40:39 UTC
7ea600b Add het likelihood 29 July 2021, 13:03:36 UTC
c923b3f Add het likelihood 29 July 2021, 13:03:15 UTC
888f886 Add draft of het gpr notebook 28 July 2021, 15:53:45 UTC
bef54f4 Add draft of het gpr notebook 28 July 2021, 15:53:15 UTC
487468e Introduced outline of heteroscedastic GPR model 27 July 2021, 16:07:02 UTC
3e4b9f1 Update RELEASE.md (#1701) Add PR references to release notes 06 July 2021, 08:24:44 UTC
6c9ed3a John/parameters (#1699) 02 July 2021, 14:51:44 UTC
f14c41e Andrewl cache gpr (#1696) 01 July 2021, 14:42:52 UTC
268e315 Small refactor of the posteriors to support other models (#1695) 22 June 2021, 14:59:14 UTC
bebbc2b fixes to remove erroneous deprecation warnings (#1693) * fix import to remove erroneous deprecation warning * also fix deprecation warnings for conditional * update RELEASE.md 18 June 2021, 13:45:40 UTC
4054c53 upgrade to black==20.8b1 (#1694) * upgrade to black==20.8b1 * update black version in CircleCI config as well * update RELEASE.md * add types-pkg_resources tests dependency * install types-pkg_resources in CircleCI too 18 June 2021, 07:15:05 UTC
55690c7 Fix unit test which fails when running with TensorFlow 2.5.0 (#1684) 17 May 2021, 12:39:53 UTC
6aab4fb Bugfix for new Posterior object with PrecomputeCacheType.VARIABLE (#1678) (#1679) Co-authored-by: st-- <st--@users.noreply.github.com> 29 April 2021, 14:32:44 UTC
b93548d Bugfix for new Posterior object with PrecomputeCacheType.VARIABLE (#1678) 29 April 2021, 11:29:44 UTC
a964149 Merge pull request #1677 from GPflow/develop Release 2.2.0 27 April 2021, 17:46:42 UTC
1205617 bump version and update RELEASE.md (#1676) 27 April 2021, 17:13:01 UTC
b4e6298 Posterior object for fast predictions (#1636) GPflow had already been optimised for speed in the training loop. This PR addresses the speed of predictions and resolves (partially) #1599. We achieve this by introducing new Posterior objects that can cache the results of a "precompute" stage (everything that's independent of test points) and thereby significantly speeds up repeated predictions. Co-authored-by: ST John <st--@users.noreply.github.com> Co-authored-by: stefanos <stefanosele@users.no-reply.github.com> Co-authored-by: John Mcleod <43960404+johnamcleod@users.noreply.github.com> 27 April 2021, 16:17:09 UTC
a8ee4ae Update HOWTO_RELEASE.md. (#1670) 22 April 2021, 21:45:22 UTC
1e1de82 Change URL for GPflow logo in README.md to absolute, so that it will render correctly on PyPI (#1669) 15 April 2021, 19:51:46 UTC
b5855ba Merge pull request #1668 from GPflow/develop Release 2.1.5 15 April 2021, 15:59:36 UTC
9f50087 Bump version to 2.1.5 (#1666) * Bump version to 2.1.5 * add release notes section for 2.2.0. 15 April 2021, 15:40:55 UTC
1d96af4 fix gpflow.config module-level docstring (#1664) 13 April 2021, 16:01:09 UTC
bfb60c0 John/iic whiten (#1663) * Add test with whiten * Make format * Update RELEASE.md Co-authored-by: st-- <st--@users.noreply.github.com> 13 April 2021, 14:22:50 UTC
0812cd3 John/fc whiten (#1662) * Add test for white=False * Make format * Update RELEASE.md 13 April 2021, 13:46:10 UTC
ea39cba Add RELEASE.md (#1661) * Add RELEASE.md inspired by TensorFlow and include in PR template * add HOWTO_RELEASE.md 12 April 2021, 15:35:40 UTC
4e6f9ce Clean up utilities subpackage (#1650) Separates gpflow.utilities.utilities into gpflow.utilities.misc and gpflow.utilities.traversal. Though user code ought to access all functions directly through gpflow.utilities, not its submodules, a backwards-compatible redirect is provided. Also moves tests around to improve module structure. 08 April 2021, 12:46:26 UTC
afb7699 bring back full list of all contributors throughout time (#1660) * bring back full list of all contributors throughout time * updated PR template * links to github accounts 06 April 2021, 10:44:42 UTC
21e5317 Proposed fix for the fully_correlated_conditional_repeat issue (#1652) Fixes #1651 06 April 2021, 10:15:35 UTC
5b76536 Fix fallback inducing points with multioutput Kuf. (#1654) Fixes #1653 06 April 2021, 09:31:52 UTC
405eb97 Update README.md (#1603) * reorganization of structure * update maintainers * update project list, including link to signature covariances project * table of contents 19 March 2021, 14:04:42 UTC
629e7b2 fix bug (that masked test failure!) in test_method_equivalence (#1649) * fix bug (that masked test failure!) in test_method_equivalence and improve collection speed * optimize non-whitened SVGP model more strongly to get test_equivalence to pass * remove --use-feature=2020-resolver (will become an error in pip 21.0) 15 March 2021, 17:16:31 UTC
1831a5d Update README and require TensorFlow>=2.2 (#1647) Add explanation of TensorFlow/TFP dependencies (as brought up by https://github.com/GPflow/GPflow/issues/1623) 07 March 2021, 14:05:42 UTC
94fa390 New _add_noise_cov method for GPR model class to make it more easily extensible (#1645) 25 February 2021, 16:12:48 UTC
3ea8731 Compatibility between Monitor API and SciPy optimizer (#1642) Co-authored-by: st-- <st--@users.noreply.github.com> 18 February 2021, 16:29:39 UTC
406d2d0 fix ModelToTensorBoard max_size = -1 (#1619) 03 February 2021, 13:45:29 UTC
797fed1 Mypy build fix (#1637) 03 February 2021, 12:38:37 UTC
bc04306 Quickfix dynamic shapes in quadrature (#1626) 13 January 2021, 16:31:51 UTC
721756a list structured-dgp as downstream project (#1621) Co-authored-by: st-- <st--@users.noreply.github.com> 12 January 2021, 12:31:17 UTC
7688477 Fix tests for TF 2.4/TFP 0.12 (#1625) * fix test_deepcopy * increase test_scipy_jit tolerance to make it pass 12 January 2021, 11:59:48 UTC
ff4bb90 Release 2.1.4 (#1613) * Replace len(inducing_variable) with inducing_variable.num inducing property (#1594). Adds support for inducing variables with dynamically changing shape. Change usage from `len(inducing_variable)` to `inducing_variable.num_inducing` instead. Resolves #1578. * HeteroskedasticTFPConditional should construct tensors at class-construction, not at module-import time (#1598) 01 December 2020, 12:56:56 UTC
60e19f8 bump version to 2.1.4 (#1612) 01 December 2020, 11:59:33 UTC
61fc327 list trieste as downstream project (#1611) * list trieste as downstream project Co-authored-by: Joel Berkeley <joel.berkeley@secondmind.ai> Co-authored-by: st-- <st--@users.noreply.github.com> 26 November 2020, 17:14:04 UTC
282d1cd HeteroskedasticTFPConditional should construct tensors at class-construction, not at module-import time (#1598) 15 October 2020, 17:54:23 UTC
8562503 Replace len(inducing_variable) with inducing_variable.num inducing property (#1594) Adds support for inducing variables with dynamically changing shape. Change usage from `len(inducing_variable)` to `inducing_variable.num_inducing` instead. Resolves #1578. 08 October 2020, 15:04:55 UTC
6f7f0d8 Merge pull request #1593 from GPflow/develop Release 2.1.3 07 October 2020, 15:58:01 UTC
9f95d87 bump version to 2.1.3 (#1590) 07 October 2020, 12:01:42 UTC
cfd1830 Doc requirements update (#1592) * update doc requirements * update copyright 07 October 2020, 11:46:04 UTC
638c4ed Bugfix for independent_interdomain_conditional (#1583) Resolves #818 Co-authored-by: ST John <st@secondmind.ai> 07 October 2020, 10:07:35 UTC
39c8a76 enable trigger-docs-generation for master branch as well (#1580) Co-authored-by: ST John <st@secondmind.ai> 06 October 2020, 15:25:12 UTC
3baf368 Remove tiling workaround for lack of broadcasting in previous TensorFlow versions (#1585) We used to tile in gauss_kl() to work around TensorFlow's lack of broadcasting. Since TensorFlow 2.2, this is finally working, and this PR removes the tiling for TensorFlow>=2.2. Resolves #1321. Co-authored-by: ST John <st@secondmind.ai> 06 October 2020, 15:03:54 UTC
e248051 update intro_to_gpflow2 notebook to account for saved_model now working (#1586) Co-authored-by: ST John <st@secondmind.ai> Co-authored-by: Sandeep Tailor <s.tailor@insysion.net> 06 October 2020, 14:12:33 UTC
98f7997 fix broken API docs (#1587) * move Version check inside reset_cache_bijectors to not confuse Sphinx * revert non-working "projects: 7" line in bugs issue template * fix code-block type in intro.rst 06 October 2020, 13:30:52 UTC
8dc912e Fix notebook heading levels and add links (#1579) * fix heading levels * add cross-references 06 October 2020, 12:37:15 UTC
7d6a6da Update issue templates (#1581) * automatically add bugs to bug project board * disable blank issues Co-authored-by: ST John <st@secondmind.ai> 05 October 2020, 15:50:31 UTC
b74e19e Explicit NotImplementedError on predict_y/predict_log_density with full_(output_)cov=True (#1582) Closes #1569 Co-authored-by: ST John <st@secondmind.ai> 05 October 2020, 10:48:01 UTC
aa875b1 Merge pull request #1576 from GPflow/develop Release 2.1.2 30 September 2020, 17:12:47 UTC
8e0744a bump version to 2.1.2 (#1575) 30 September 2020, 16:57:30 UTC
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