swh:1:snp:2c68a6c5a8af2f06ac2c0225927f25b54fd1f9d0
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Tip revision: 6313ce21ea98857cf95d996de7978cfd52175e59 authored by Dominique Makowski on 08 April 2021, 04:40:02 UTC
version 0.9.0
Tip revision: 6313ce2
test-blavaan.R
if (suppressPackageStartupMessages(require("bayestestR", quietly = TRUE)) && require("testthat")) {
  test_that("blavaan, all", {
    skip_if_not_installed("blavaan")
    skip_if_not_installed("lavaan")
    require(blavaan)

    data("PoliticalDemocracy", package = "lavaan")

    model <- '
    # latent variable definitions
    dem60 =~ y1 + a*y2
    dem65 =~ y5 + a*y6

    # regressions
    dem65 ~ dem60

    # residual correlations
    y1 ~~ y5
  '

    model2 <- '
    # latent variable definitions
    dem60 =~ y1 + a*y2
    dem65 =~ y5 + a*y6

    # regressions
    dem65 ~ 0*dem60

    # residual correlations
    y1 ~~ 0*y5
  '
    suppressWarnings(capture.output({
      bfit <- blavaan::bsem(model, data = PoliticalDemocracy,
                            n.chains = 1, burnin = 50, sample = 100)
      bfit2 <- blavaan::bsem(model2, data = PoliticalDemocracy,
                             n.chains = 1, burnin = 50, sample = 100)
    }))

    x <- point_estimate(bfit, centrality = "all", dispersion = TRUE)
    expect_true(all(c("Median", "MAD", "Mean", "SD", "MAP", "Component") %in% colnames(x)))
    expect_equal(nrow(x), 14)

    x <- eti(bfit)
    expect_equal(nrow(x), 14)

    x <- hdi(bfit)
    expect_equal(nrow(x), 14)

    x <- p_direction(bfit)
    expect_equal(nrow(x), 14)

    x <- rope(bfit)
    expect_equal(nrow(x), 14)

    x <- p_rope(bfit)
    expect_equal(nrow(x), 14)

    x <- p_map(bfit)
    expect_equal(nrow(x), 14)

    x <- p_significance(bfit)
    expect_equal(nrow(x), 14)

    x <- equivalence_test(bfit)
    expect_equal(nrow(x), 14)

    x <- estimate_density(bfit)
    expect_equal(length(unique(x$Parameter)), 14)


    ## Bayes factors ----
    x <- expect_warning(bayesfactor_models(bfit, bfit2))
    expect_true(x$BF[2] < 1)

    bfit_prior <- unupdate(bfit)
    capture.output(x <- bayesfactor_parameters(bfit, prior = bfit_prior))
    expect_equal(nrow(x), 14)

    x <- expect_warning(si(bfit, prior = bfit_prior))
    expect_equal(nrow(x), 14)

    x <- expect_warning(weighted_posteriors(bfit, bfit2))
    expect_equal(ncol(x), 14)

    ## Prior/posterior checks ----
    suppressWarnings(x <- check_prior(bfit))
    expect_equal(nrow(x), 13)

    x <- check_prior(bfit, simulate_priors = FALSE)
    expect_equal(nrow(x), 14)

    x <- diagnostic_posterior(bfit)
    expect_equal(nrow(x), 14)

    x <- simulate_prior(bfit)
    expect_equal(ncol(x), 13)
    # YES this is 13! We have two parameters with the same prior.

    x <- describe_prior(bfit)
    expect_equal(nrow(x), 13)
    # YES this is 13! We have two parameters with the same prior.

    x <- describe_posterior(bfit, test = "all")
    expect_equal(nrow(x), 14)
  })
}
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