swh:1:snp:3a699297f000109a1bc833f294a54171df990207

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Revision Author Date Message Commit Date
3ab54cd revert version to development. (#2188) * bump version * revert version to development 31 May 2018, 13:51:59 UTC
0195bbb bump version (#2187) 31 May 2018, 12:33:52 UTC
bc598ec update Dockerfile (#2186) 30 May 2018, 20:29:13 UTC
472fee4 Update .travis.yml 30 May 2018, 15:43:39 UTC
f6be944 centralize and update lalsuite hash (#2183) * centralize and update lalsuite hash * move to the standard lalsuite git location now 30 May 2018, 15:36:29 UTC
c1a8799 Document how Travis secure strings are constructed (#2137) * document meaning/purpose of global strings * clarified comment s/global/secure/ 29 May 2018, 21:39:57 UTC
b877947 Update README.md 29 May 2018, 20:03:04 UTC
31b66b6 add some simple install instructions (#2181) * install * stuff 29 May 2018, 20:01:09 UTC
123f73c Update waveform.py (#2177) 28 May 2018, 12:08:44 UTC
51ca948 E@H: hotfix for Windos/Cygwin build until lscsoft-glue#40 was merged (#2171) - should automatically become ineffective once branch 'bema-ligo/fix_eah_windows' is deleted, i.e. https://git.ligo.org/lscsoft/glue/merge_requests/40 was merged. 25 May 2018, 00:18:29 UTC
149bed1 return scalar as expected for numpy passthrough methods (#2175) * return scalar as expected for numpy passthrough methods * typo 24 May 2018, 16:40:43 UTC
5c80c8f free the plan for fftw and mkl (#2172) 22 May 2018, 19:21:40 UTC
88483a8 Error message for fake strain with injections (#2173) * Error message for fake straing with injections * Be more specific on error message * Avoid repetitions * Fix codeclimate issue? * Fix codeclimate issue? I don't know what it wants! * Correct indentation 22 May 2018, 18:06:00 UTC
36afd28 Update documentation on OSG running (#2170) 19 May 2018, 21:20:51 UTC
7778974 Simplify ACL algorithm (#2160) * use algorithm from Sokal et al for computing ACL * fix whitespace 16 May 2018, 16:45:05 UTC
28ed891 setup: unfix astropy requirement (#2166) >=2.0.3 is fine as long as <3 15 May 2018, 16:59:55 UTC
528ca5e Only re-calculate burn-in if needed (#2147) * only re-calculate burn-in if needed * fix typo 15 May 2018, 13:40:12 UTC
eef5754 Remove primary/secondary mass constraints in chi_a transforms/conversions (#2156) 15 May 2018, 11:58:09 UTC
98877c2 Install six>=1.10.0 (#2164) 14 May 2018, 20:40:15 UTC
6071086 allow for the whitening psd to be returned (#2161) 10 May 2018, 20:46:33 UTC
d3d0c99 remove the future module (#2162) * remove old INSTALL parts * remove future.y * update scipy requirements * update zpk to use scipy * update results to use python htmlparser * bump matplotlib requirements * no more future module 10 May 2018, 19:19:23 UTC
36d0ac8 Create CODE_OF_CONDUCT.md (#2142) * Create CODE_OF_CONDUCT.md Add the suggested code of conduct from github. * Update CODE_OF_CONDUCT.md 10 May 2018, 16:39:55 UTC
e1360c1 Avoid repeatedly applying the padding (#2159) 09 May 2018, 19:45:57 UTC
5224b50 Add burn in that uses the minimum of max posterior and n acl (#2148) * add max_posterior or n_acl burn in * fix typo 04 May 2018, 09:37:58 UTC
4736f83 Fix bug in some single IFO pygrb runs (#2158) 03 May 2018, 12:39:08 UTC
ea697ba Allow use of remote gating files in pygrb (#2145) 02 May 2018, 19:05:47 UTC
a844d4d don't import gwpy for colors (#2157) 02 May 2018, 14:00:21 UTC
120dbe0 Make understandable which options are missing for fake strain (#2140) * Make understandable which options are missing for fake strain * change lowfreq 02 May 2018, 13:26:27 UTC
1b40c74 Fix pyplot import issue in legacy_grb.py (#2155) * Fix pyplot import issue in legacy_grb.py * Remove usused import 02 May 2018, 12:35:56 UTC
7cfaefc Change m_1 > m_2 when getting masses from mc and q (#2154) * remove m1 > m2 constraint when getting masses from mc and q * ws 01 May 2018, 14:59:41 UTC
fbb93c5 Pygrb o2 dev (#2143) * Fix analysis time when doing gating * Increase pygrb sky patch radius for Fermi GBM GRBs * Adding long timeslides to PyGRB * Fixing ordering of IFOs in PyGRB workflow (to alpha) * Changes to properly generate 3-sigma sky errors * Allow number of long timeslides to be provided * Make sure trigger v time plots dont have slides * Changing autogating to gating in the workflow, as the gating jobs are not necessarily autogating ones * Fix bug caused by new treatment of config file * Gating segment fix * Fix Codacy issues * Fix incorrect result page label for BestNR plot 01 May 2018, 06:38:21 UTC
1e7b3bd Add new coinc event combiner executable (#2151) * Add combiner of coincident events * Add new exe * Tom's comment on accessing detector keys * Deal with minor comments * More comments from Tom 25 April 2018, 16:10:22 UTC
23774be Fix pycbc_single_template_plot error on headless systems (#2152) 25 April 2018, 09:55:51 UTC
7d97727 add fd approximants for td ones (#2131) * use the same name for td from fd approximants * add equivelant td taper function * update documentation * add function to generate fd waveforms from td * fix bug * add td approximants to fd where possible * ws 24 April 2018, 01:31:22 UTC
3405a23 Psd variation - adding freq weighting (#2144) * adding option for weighting by frequency in psd variation * fixing a bug in variation where not enough elements were created to store psd variable value in certain cases * adding changes made to psd variation, added freq weighting * adding in comments to variation code so it becomes clearer what the code is doing * correcting spelling mistake in comments and redefining the start and end time at the beginning of the function as floats 24 April 2018, 01:28:00 UTC
13d273d Fix bug in start index calculation and simplify inline linear; allow compress bank to run on compressed files (#2111) * allow compressed bank files to be compressed * make sure compress bank doesn't write previously compressed waveforms * fix start idx calculation * include last point in interpolation * simplify and fix bug in interpolation code 23 April 2018, 17:10:04 UTC
a93f89e Change 32 by h1.duration in delta_f (#2146) 21 April 2018, 13:02:53 UTC
9ebff7c Fix bug in colored_noise function (#2139) * Fix bug in colored_noise function * Change documentation instead 19 April 2018, 10:27:52 UTC
c9dc65a Allow mchirp, q transform to handle either q > 1 or q < 1 (#2136) * Allow mchirp, q transform to handle either q > 1 or q < 1 * remote whitespace 18 April 2018, 19:36:21 UTC
fe95ea9 Add checks to not crash upstream code if there are not any foreground events after hierarchical removals. (#2135) 18 April 2018, 14:52:48 UTC
15fd8a7 Update citation guide with Nitz+ 2017 (#2132) * Update citation guide with Nitz+ 2017 * Use code-block 17 April 2018, 13:00:16 UTC
e439768 Use official sphinxcontrib-programoutput again (#2134) 17 April 2018, 12:54:38 UTC
ad7f028 Fix a build issue in Travis (#2133) * Does this fix the build? * Try also this * Update docs a little 17 April 2018, 09:46:21 UTC
1cca4f9 removed trailing whitespace where I could find it (#2127) 16 April 2018, 14:16:17 UTC
482b594 Fixed DeprecationWarning when using numpy.linspace (#2124) * cosmology._DistToZ: use self.numpoints in __init__ means there's a single place where `numpoints` is referenced (as opposed to `self.numpoints`) * cosmology._DistToZ: store numpoints as int removes `DeprecationWarning` when calling `numpy.linspace` 15 April 2018, 13:57:08 UTC
1657191 pycbc: fixed two uses of python as a statement (#2128) needs to be a function call in python3 12 April 2018, 06:57:40 UTC
e1b5e6d ParameterList: use OrderedDict for dicts (#2125) preserves ordering of parameters 11 April 2018, 18:19:19 UTC
f310288 six: use string_types for string type checking (#2129) 11 April 2018, 18:16:39 UTC
e4ddbf7 Move functions for reading parameters from config to distributions module (#2123) * move config parsing from inference to distributions, workflow * update create_injections, pycbc_inference * bug fixes * remove wildcard imports, add needed imports * update tests * fix typo * move boundaries.py to top level and update imports * move VARARGS_DELIM into pycbc/__init__.py 11 April 2018, 10:17:55 UTC
f9bba77 CONTRIBUTING.md: added contributions guide (#2120) this is stolen wholesale from gwastro/gwin 11 April 2018, 10:17:07 UTC
8a61ce9 add to MarginalizedLikelihood to __all__ (#2122) 09 April 2018, 17:00:50 UTC
064451d fix bug in acl burn in when using emcee_pt (#2121) 06 April 2018, 19:11:31 UTC
17242fb Updated virtualenv builder to install LALSuite into standard virtualenv path (#2110) * tools: build LALSuite with prefix=VIRTUAL_ENV not VIRTUAL_ENV/opt/lalsuite * tools: set PKG_CONFIG_PATH when building virtualenv * tools: fixed bug in sed command 05 April 2018, 22:08:00 UTC
08f00b7 Update README.md 05 April 2018, 21:48:33 UTC
18dac7c Add uniform component masses distribution (#2113) * add uniform component masses distribution * remove unused import * added param argument to rvs function * fix documentation * add uniform component masses to example ini file * exclude uniform component masses from 1D tests 05 April 2018, 18:11:30 UTC
ec7e7b0 Update README.md 05 April 2018, 16:14:48 UTC
2537f80 update documentation to point to pycbc.org instead of ligo-cbc.github.io (#2119) * remove install.sh * add descr.rst * update readme * make documentation changes where possible to point to pycbc.org 05 April 2018, 15:52:08 UTC
a21cf52 allow injection of fourier domain approximants (#2116) * add fd waveforms to get td waveform * update * update docstring * use power 2 sizes 05 April 2018, 15:39:57 UTC
e054a94 Beginning removal of pycbc_glue (#2035) * Pycbc_glue -> glue * Try this * Try this * Another test * Remove pycbc_glue. Move ligolw to pycbc * Please don't moan about the tabs!! * Resolving some minor issues * More changes * Why is this so hard to debug!!!! 05 April 2018, 13:14:11 UTC
b1f3751 Add ACL-based burn in and fix ks test burn in (#2112) * fix ks test; add n_acl burn in * use keyword argument for KS threshold 05 April 2018, 12:53:05 UTC
06e8a55 Add fd2td waveform functions (#2115) * add fd2td functions * rename * whitespace 05 April 2018, 11:10:48 UTC
0083549 Remove static build (#2117) 05 April 2018, 08:43:16 UTC
926286e Set back to development 26 March 2018, 20:02:36 UTC
2557bb5 Set for 1.9.4 release 26 March 2018, 19:57:02 UTC
61d9c3f Fix Debian4 Einstein@Home/OSG build (#2093) * E@H Debian 4: install libbz2-dev before compiling Pythom (or else the module 'bz' will not be available) * E@H build: prefer curl over wget for determining the blessed lalsuite version 21 March 2018, 15:59:28 UTC
c275fa6 add doc on runny jupyter within docker (#2097) 20 March 2018, 21:51:19 UTC
022da40 Adds wrapper script for pycbc_inference (#2109) * adds wrapper script for pycbc_inference * add run_pycbc_inference to setup.py 16 March 2018, 11:19:30 UTC
13fbc64 add marginalized phase likelihood (#2090) 15 March 2018, 15:37:07 UTC
e2805d6 Fixed bug in import version info to __init__ (#2107) * pycbc.__init__: use relative import fixes #2106 * pycbc.__init__: provide __version__ allows access to version information through standard name 15 March 2018, 12:59:32 UTC
524423b pycbc.__init__: don't print mkl importerror (#2108) its empty 15 March 2018, 12:58:21 UTC
bf127e3 provide strain high pass option for gaussian noise (#2104) 14 March 2018, 09:27:28 UTC
9df42b6 don't explicitly require lal gpstime python module (#2062) 13 March 2018, 23:11:27 UTC
e05e368 use None for required args default (#2102) 12 March 2018, 20:38:44 UTC
4d8bedb fix label (#2103) 12 March 2018, 20:28:26 UTC
bb6bdc1 Plot injection values in plot posterior (#2101) * add function to get injection parameters from result files * add ability to use injections for the expected parameters * fix bugs * remove common offset from expected parameters * use new function in option utils * add option to plot movie * improve docs for function 12 March 2018, 18:26:00 UTC
43fd991 Check for burn in when counting number of independent samples (#2099) * check for burn in when counting number of independent samples * remove check for burn in, since this is now done in the sampler 10 March 2018, 09:47:15 UTC
14f60de Add new fitting executable (#2048) * add multi param average fitting * add more fitting options * allow alternate t/f versions * update fixes * fix typo 09 March 2018, 22:46:26 UTC
a55df0b Give option to save backup (#2100) * don't delete backup file unless requested * make the default operation be to delete 09 March 2018, 20:48:03 UTC
c61b241 Add the new keep-history keyword https://docs.travis-ci.com/user/deployment/pages/ 09 March 2018, 18:34:51 UTC
ae35ea8 Updates to plot_inj_interval (#2096) * cast to fieldarray so can use the same parameter args for both injections and samples * use perecentile of score for pp plots; add KS test * set kind to weak * add plot metadata 09 March 2018, 18:00:50 UTC
83f6745 PSD variation code (#2087) * adding first attempt at recording psd variation Values wont propagate through to the end. Trying now to tidy up code * first attempt at pulling out a psd variation value for each trigger to come out of pycbc_inspiral * first end to end testing of psd variation with pycbc inspiral. So far all works * making changes per merge request. Sorted out comment spacing in variation.py and moved this in to psd * sorting out spacing in variation.py * removing unused import in variation and removing trailing whitespace in various locations * adding psd variation options to multi_ifo * moving the psd variation options out of strain and into psd 09 March 2018, 12:18:57 UTC
f6e6e7f FIx edge effect bug (#2098) 09 March 2018, 11:11:24 UTC
bc9a5ee Make conversions module consistent with numpy (#2095) * always return array if an array was given * make ensurearray, formatreturn public * propagate changes to ensurearray to other modules 07 March 2018, 12:34:25 UTC
504a1a3 add bzip2 to explicity build req (#2094) * add bzip2 to explicity build req * debug * test * test 06 March 2018, 20:15:33 UTC
c99069b add gwpy to install within cvmfs / docker (#2092) * add gwpy to install within cvmfs / docker * astropy required * update 06 March 2018, 15:54:01 UTC
a132f2b Add functions to find intersection of time series (#2081) * add function to add common part of time series * split into a second common function * update * codacy complaints 06 March 2018, 09:13:17 UTC
6463293 add slack notifications to travis 05 March 2018, 16:57:27 UTC
0631358 Astro results using PyCBC (#2009) * Added Astro * Changed project Name * Moved pycbc_astro to bin * moved pycbc_astro to the new nolder population with new name pycbc_population_rates * Added init * moved folder population inside bib * added population to setup.py * Updated the two python files * updated executable file * Addressed Ian's Ales's first set of comments * Made suggested corrections. Included Calibration errors. Made astro parameter input by user. * Fixed Codacy, removed pystan with my version * removed seaborn. shortened long lines * more codacy fixes * fixed Collins suggestions * all inputs from files now and not folders * Injection strategy now provided by the user. Much simplified now. * Codacy fixes * fixed comments * removed useless function, fixed Ian-s suggestion * Fixed Toms suggestion and other codacy stuff * made changes to init file as suggested by Ian 27 February 2018, 11:16:21 UTC
95bc9cc Need to round non-integer frame times up (#2088) 26 February 2018, 12:37:01 UTC
97c8167 PSD variation code (#2079) * adding first attempt at recording psd variation Values wont propagate through to the end. Trying now to tidy up code * first attempt at pulling out a psd variation value for each trigger to come out of pycbc_inspiral * first end to end testing of psd variation with pycbc inspiral. So far all works * making changes per merge request. Sorted out comment spacing in variation.py and moved this in to psd * sorting out spacing in variation.py * removing unused import in variation and removing trailing whitespace in various locations 23 February 2018, 17:19:24 UTC
e3f4927 set back to dev (#2084) 23 February 2018, 11:53:42 UTC
76e0492 Set version for 1.9.2 release (#2083) 23 February 2018, 09:30:48 UTC
d76240c Updated psd.estimate.welch to allow window as ndarray (#2080) * psd.estimate: allow window as ndarray with sanity check that its the correct size * psd.estimate.welch: updated function docstring to include `numpy.ndarray` as a type for `window` 21 February 2018, 16:46:58 UTC
2118175 Use waveform_transforms in pycbc_create_injections (#2069) * Use waveform transforms and save those params * Remove replace_parameters and make waveforms_transforms use static args too as inputs * fix_typo 21 February 2018, 12:18:23 UTC
63f629f Resume from checkpoint file (#2055) * allow resumming from checkpoint or backup files * fix issues using checkpoint with kombine * fix codacy issues * fix mcmc * fix whitespace * update command line, save points when resumed from checkpoint * allow for backward compatibility * fix whitespace * only return checkpoint_valid; write command line to backup file 21 February 2018, 11:17:20 UTC
e71541d Allow CustomTransform to work with arrays (#2077) * allow CustomTransform to work with arrays * fix typo 15 February 2018, 07:31:50 UTC
c0288c9 Fix checking for required args in waveform (#2074) * add f_lower to list of required parameters * check for required args in props 14 February 2018, 13:48:09 UTC
8fc8cba Fix Travis build failure (#2073) 12 February 2018, 16:36:08 UTC
87a3268 fix trivial bugs in page sensitivity (#2070) 09 February 2018, 21:45:50 UTC
46505dd Fixes to the running on osg part of the documentation (#2071) 09 February 2018, 19:43:33 UTC
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