swh:1:snp:3a699297f000109a1bc833f294a54171df990207

sort by:
Revision Author Date Message Commit Date
56e0854 Prepare for release (#3516) 26 October 2020, 15:56:35 UTC
0182f62 pycbc_coinc_mergetrigs: minor fix and cleanup (#3512) 26 October 2020, 12:53:59 UTC
2ec5452 Minifollowup plot tweaks (#3511) * plot_singles_timefreq: improve caption, correct behavior of --center-time and clean code * plot_qscan: add title with channel name and clean code * Fissa un insetto * Whitespace * Silence warning * Plot chirp in every panel * Describe chirp in caption * Show channel name in caption 26 October 2020, 12:52:33 UTC
be4df88 Fix bug in pycbc_inspiral (#3514) * LOWER FREQUENCY CAN CHANGE!!!! * Need to update chisq as well * WS * Avoid duplication * Fix * Another fix * Update bank.py 26 October 2020, 12:50:08 UTC
420ada1 Fix empty plots in minifollowups (#3510) * Changes in pycbc_injection_minifollowup * 2nd change * 3rd change Co-authored-by: Marion Pillas Boissonnet <marionpillasboissonnet@client-172-18-72-200.clients.u-psud.fr> 26 October 2020, 12:04:23 UTC
b270e6a Address error when no gating veto argument was given (#3513) * Address error when no gating veto argument was given * Fix error when no gating veto argument is given * add comment on default empty dict assignment * shorten too long line Co-authored-by: Thomas Dent <thomas.dent@usc.es> 22 October 2020, 22:33:16 UTC
27c8cd6 Added PSD Var and Finalize-events-template-rate (#3508) * Added PSD Var and Finalize-events-template-rate * Removed q-transform Removed q-transform. 22 October 2020, 15:11:22 UTC
c04e950 Correcting git clone (#3509) * This update corrects an error caused by pull request #2562. It changes parser.add_argument from default = ["prior"] to default="prior". It also changes the option name from - -sections to --prior-section * fix git hub url for documentation Co-authored-by: Stephanie Brown <Stephanie.Brown@aei.mpg.de> Co-authored-by: Stephanie Brown <stephanie.brown@condor1.atlas.local> 22 October 2020, 09:03:49 UTC
5a410bf Fix case where one detector combo has no foreground triggers (#3504) * fix case where one detector combo has no foreground triggers * simplify dict comprehension 19 October 2020, 11:03:57 UTC
ee59ea0 Script to calculate stats, write to file (#3506) * add script to calculate model stats * modify help message 18 October 2020, 13:30:52 UTC
21a0d08 Add waveform modes module (#3482) * add waveform_modes module * clean up docs, use l instead of ell * remove phenom l0frame to jframe function * make imrphenomx function hidden for now 18 October 2020, 10:58:16 UTC
ee4c978 Write config file to inference file (#3505) * write config file to inference file * use older stringio module for py27 18 October 2020, 10:53:55 UTC
42044f9 Write logevidence and dloz at the 'finalize' step (#3503) Co-authored-by: Sumit Kumar <sumit.kumar@condor4.atlas.local> 16 October 2020, 17:10:27 UTC
078e9f8 Fix error with approximant strings in HDF injections (#3502) 16 October 2020, 16:24:21 UTC
59fbe11 Add support for dynesty debugging plots in workflow (#3501) * Add support for dynesty debugging plots in workflow * Ficing code climate issues Co-authored-by: Sumit Kumar <sumit.kumar@condor4.atlas.local> 16 October 2020, 15:19:48 UTC
db885b5 Adding dynesty diagnostic plots (#3496) * Adding dynesty diagnostic plots * Some cleanup * Some more clean up Co-authored-by: Sumit Kumar <sumit.kumar@condor4.atlas.local> 16 October 2020, 12:00:56 UTC
3316ddb MCMC history diagnostic plot (#3499) * add executable to plot mcmc history * fix typos, clean up plots 16 October 2020, 11:44:14 UTC
2af1041 set back to development (#3497) 09 October 2020, 18:46:21 UTC
3ec7039 prepare for release (#3493) 09 October 2020, 15:40:51 UTC
1dc47c6 Add gating veto to split hist trigger plots (#3494) 09 October 2020, 15:00:13 UTC
d801bc1 Core collapse supernovae (#3485) * made changes to gaussian_model.py and created supernovae.py in waveforms * Added core bounce waveform; convex hull constraint * Undo the changes made in gaussian_noise.py * removed rebase comments; removed whitespaces * Changed name to SupernovaeConvexHull; created __init__ to construct the hull within SupernovaeConvexHull * Made some PEP8 friendly changes * using to read the principal component file * Reduced line lengths 09 October 2020, 13:35:25 UTC
ee66c98 Ringdown bugs (#3490) * Bugfix: Wrong order of arguments. * Use correct ringdown functions for chosen approximant. * Add documentation, simplify code. * Fix codeclimate issue. 09 October 2020, 13:31:03 UTC
bd4367b Additional gating veto (#3488) * Add gating veto for IMBH search * Include gating veto in fit singles * Implementation of gating veto into the workflow * Adding checks to gating veto window values * Adding unique function to remove repeated gates * Add gating veto windows argument to multiifo coinc code * PEP8 changes to fix code-climate issues. * Fixed Pylint issues * Removed excess spacing. * Fixed PEP8 issue * Addressing review comments Co-authored-by: Koustav Chandra <56917539+KoustavChandra@users.noreply.github.com> 09 October 2020, 08:51:52 UTC
32a79e4 coinc_lim_for_thresh for BBH statistics (#3491) * add Mchirp weighting to BBH coinc_multiifo_lim_for_thresh * line length * space ... Co-authored-by: Thomas Dent <thomas.dent@usc.es> 07 October 2020, 17:03:30 UTC
8557d12 Support HDF injection files in pycbc_optimal_snr (#3420) * Start teaching pycbc_optimal_snr to use HDF injections * Arguably cleaner code 07 October 2020, 12:54:41 UTC
0c424d2 Added support for threshold (#3487) * Added support for threshold * Update hdf.py * whitespace Co-authored-by: Koustav Chandra <koustav.chandra@ldas-pcdev6.ligo-wa.caltech.edu> 04 October 2020, 15:43:49 UTC
f0fd8ba add multiband waveform to speed up slow / long waveform approximants (#3446) * minor * update * update * avoid circular import 02 October 2020, 19:04:15 UTC
c2dc94d make start file from dynesty output (#3444) * script to convert dynesty to emcee_pt_file * test * update * update * fixes * update * fixes 02 October 2020, 18:29:27 UTC
ee9ae79 allow one to set the parameters for the first bounding region in dynesty (#3470) * pass in first update options * fixes * add documentation * typos * cc 02 October 2020, 17:33:15 UTC
c61e214 avoid contains or conversions when not needed in joint dist (#3433) * avoid contains or conversions when not needed * revert one change * still need this part * fix * address collin 02 October 2020, 15:40:58 UTC
dd757c7 Fix typo in example workflow config and other cleanup (#3480) * fix typo in workflow config, add no-create-proxy to submit dax command * remove old inference workflow files 02 October 2020, 14:31:20 UTC
73e8d2e set back to development (#3481) 02 October 2020, 13:26:17 UTC
7b4c0ea prepare for release (#3479) 02 October 2020, 10:34:54 UTC
ce4d78d Complete the range of non-bbh psd-threshold stats (#3478) 01 October 2020, 16:33:59 UTC
146e8a8 Cache waveform generator (#3453) * initial commit * simplify caching * redefine hash * rename waveform * indednt Co-authored-by: Collin Capano <collin.capano@aei.mpg.de> 01 October 2020, 12:29:36 UTC
aa7d291 Fix filter points option (#3477) * Making filter points option to work again * zip to list 01 October 2020, 09:14:53 UTC
ba491e3 pycbc_make_skymap: fix a bug, some improvements, and code cleanup (#3431) * pycbc_make_skymap: fix a bug, some improvements, and code cleanup Restore the original use case where the frame files are automatically guessed, which was broken by the addition of the --custom-frame-files option. Improve the logging in case of failure of pycbc_single_template. Remove an unused option. Massive code cleanup. * More cleanup * Add example for pycbc_make_skymap * Add zoomed plot for GW170817 and example for GW150914 30 September 2020, 19:51:50 UTC
9796a96 Removal of a manual list of trigger times (#3476) * start adding things to manually remove triggers from analysis * fix miscalled module, add some logging * correct page_snrifar help message 30 September 2020, 18:02:43 UTC
5e769c3 Update ringdown format_lmns to accept whitespace-separated string. (#3454) * Update ringdown format_lmns to accept whitespace-separated string. * Remove unnecessary whitespace. 30 September 2020, 15:31:17 UTC
67d9e2b Minor improvements to relative likelihood model (#3475) * exclude high-frequency zeroes from bins * allow setting powerlaw indices from config * update docstrings * add logging of powerlaw indices * codeclimate 30 September 2020, 15:21:33 UTC
17e3e5c Add ability to turn off redshifting masses in TOV transforms (#3141) * add ability to turn off redshifting masses in TOV transforms * code climate pep8 issues * add docs about turning off redshifting 29 September 2020, 16:34:41 UTC
0adc50f Be able to read injection files written in python 2 (#3472) * be able to read injection files written in python 2 * make sure static parameter names are strings 29 September 2020, 16:08:47 UTC
56aa6d7 Add ability to threshold on psd_var and chisquared to new statistic (#3474) * Add new stat with threshold * Reduce thresholds * Typo * Needed more than I realised * Update ranking.py * CodeClimate * Also add singles statistic 28 September 2020, 18:11:36 UTC
4a55a22 Allow injection set to write string datatypes (#3471) * check for strings when writing injections * make sure loaded arrays are U type 24 September 2020, 17:53:58 UTC
16a9273 Add support for ptemcee (#3457) * add ptemcee sampler class * add ptemcee file type * register ptemcee sampler * add ptemcee to companion modules * thin betas when writing using the write_samples machinery * forgot import * fix read betas * remove from companion.txt since released version doesn't work * add download from ptemcee master to companion.txt * move reading betas from file to stand-alone function * add support for adaptation and setting betas from config to ptemcee * typo * add ptemcee example stub 24 September 2020, 15:11:20 UTC
e4ad784 ForegroundTrigger in io/hdf now outputs ifos of triggers (#3460) * ForegroundTrigger in io/hdf now outputs ifos of triggers * Made changes for codeclimate standard * ForegroundTrigger in io/hdf now outputs ifos of triggers * Made changes for codeclimate standard * ForegroundTriggers get_ifos now gives a list of list of detectors for each trigger Co-authored-by: Fergus John Hayes <fergus.hayes@ldas-pcdev2.ligo.caltech.edu> 24 September 2020, 12:35:35 UTC
91242d9 Add VIRTUAL_ENV/lib to default ctypes search paths (#3465) 23 September 2020, 19:53:41 UTC
0eb9c66 Fixes to live combine trigger fits (#3391) * be less proscriptive with date format * fix issues if no triggers in a bin - ensure ifar = 0 in this case 23 September 2020, 15:40:58 UTC
aa53f4a Fix issues with extracting samples from dynesty file (#3458) * fix issues with extracting samples from dynesty file * create custom generator for shuffle * use random state for earlier versions of numpy 23 September 2020, 15:07:22 UTC
7d01119 add maxl stats to brute force marginalization model (#3464) 23 September 2020, 15:06:38 UTC
08945c8 Fix Travis builds (#3462) 23 September 2020, 13:11:23 UTC
01e87c8 Various little improvements to PyCBC Live (#3459) * PyCBC Live: give meaningful titles to subprocesses, so htop display is clearer * Poll for new data more frequently; reduce verbosity * Skip cores check if SNR optimization is disabled 22 September 2020, 14:51:30 UTC
7944ccb add option to save parameters of failing waveforms (#3450) * add option to save parameters of failing waveforms * Update generator.py 19 September 2020, 11:35:45 UTC
15b7451 brute force marginalization (#3452) * add brute force marginalization model * fix * fixes 19 September 2020, 11:28:44 UTC
f8eb273 Writing checkpointing history to output files (#3455) Co-authored-by: Sumit Kumar <sumit.kumar@condor4.atlas.local> 18 September 2020, 22:43:56 UTC
421a733 Epsie: adaptive proposal support (#3437) * add support for Epsie adaptive proposals * update function description * start requiring epsie 0.6 * Account for changed names of Epsie's proposals * Add support for Epsie discrete successive jumps * add support for reading componentwise scaling * make componentwise optional 18 September 2020, 15:05:27 UTC
8d418dc simplify install instructions (#3443) * simplify install instructions * fix block indent * update * remove old reference * update 18 September 2020, 12:58:01 UTC
aece9cf Add model with numerical marginalization of the polarization angle (#3442) * add polarization marginalized model * add two pol det frame generator * docs * point to generator * init stuff * add normalization for marg * typo * comma * fix various typos * fix * add maxl polarization and optimal snrsq to extra stats * cleanup and rearrange * cc * fixes Co-authored-by: Collin Capano <collin.capano@ligo.org> Co-authored-by: Collin Capano <collin.capano@aei.mpg.de> 18 September 2020, 12:57:24 UTC
b04f931 Dynesty: add nested samples and write to backup file (#3376) * merging all previous commit * Fixing some bugs along with codeclimate issues * Fixing codeclimate issues and cleanup * Some more codeclimate issues Co-authored-by: Sumit Kumar <sumit.kumar@atlas2> 18 September 2020, 12:19:40 UTC
ef9cdd7 add reference to adv single configuration (#3434) 18 September 2020, 12:03:19 UTC
2a17494 patch to hack macs to work (#3447) 18 September 2020, 12:02:36 UTC
8eef4b0 Adding testingGR parameters for pycbc_inference (#3445) * Adding testingGR parameters for pycbc_inference * address codeclimate issue * further address codeclimate issue * address code climate issue * codeclimate * code climate * code climate * code climate * code climate 18 September 2020, 10:47:30 UTC
75799c2 PyCBC Live: fix a bug arising from early-warning test (#3448) * Fix some bugs arising from early-warning test * Line too long 16 September 2020, 08:58:54 UTC
35ccc58 add alternate walk to dynesty (#3436) * add alternate walk * small cc fixes 02 September 2020, 09:40:40 UTC
4cf93ed fixes to spa for python3 (#3438) * fixes to spa for python3 * fixes 01 September 2020, 12:58:36 UTC
b68d62f open up nested sampling to complicated / arbitrary distributions with fixed sample distribution (#3385) * recommit * new distribution * cc * fix * use dummy logp 28 August 2020, 13:00:01 UTC
1f3ae0a Add spin from pulsar frequency to conversions (#3432) * register the new function * code climate 26 August 2020, 14:45:29 UTC
1c89a8b polarization angle marginalization in single_template (#3406) * testing single template marginalization * Create single_template_p.py single_template model with ability to marginalize over polarization angle * incorporated the necessary changes into it single_template_p added num_sample which when None, will require 'polarization' as a parameter. If num_sample has some int value, an array is created, over which marginalization takes place. If num_sample has int value, and polarization is given as a param, then array is still created and marginalization is done. * polarization angle marginalization in single_template added num_sample which when None, will require 'polarization' as a parameter. If num_sample has some int value, an array is created, over which marginalization takes place. If num_sample has int value, and polarization is given as a param, marginalization has higher precedence. * Delete single_template_p.py * Delete single_template_pol_marginalization test.ipynb * code quality updates 26 August 2020, 08:18:27 UTC
382798d Update docker for singularity (#3379) * Remove Singularity constructs from docker container * Fix spelling error in Dockerfile * Add environment variables to Dockerfile * Do not set PATH or LAL_DATA_PATH in /etc/profile/pycbc.[c]sh 25 August 2020, 17:30:51 UTC
7481eca Set back to development (#3430) 20 August 2020, 21:50:32 UTC
ce8294c Prepare for release (#3429) 20 August 2020, 19:48:57 UTC
afa358b Change gzip compression level from 9 to 6 in mergetrigs (#3428) * Change default gzip compression level from 9 to 6 in mergetrigs * Expose compression as CLI option Co-authored-by: Tito Dal Canton <dalcanton@lal.in2p3.fr> 20 August 2020, 17:22:20 UTC
9e97329 Changed the error-code when the code errors out. (#3425) Changes: -Changed the error-codes on sys.exit to 1 instead of 0. -Fixed a bug, where the wrong times were printed in error messages. Co-authored-by: Marlin Schaefer <marlin.schaefer@condor3.atlas.local> 18 August 2020, 15:11:42 UTC
88e2b41 zero out dc for lalsim method (#3424) 18 August 2020, 13:31:10 UTC
f6a8a88 Added ability to accept multiple frame files to pycbc_make_skymap. (#3421) * Added ability to accept multiple frame files to pycbc_make_skymap. * Adjusted segment checks to take multiple frames into condieration. * Added option to change the sample-rate of the data. Changes: -Fixed a bug where the custom frame-files were not correctly passed to pycbc_single_template -Added option to choose the sample-rate of the input data. 14 August 2020, 19:20:32 UTC
72b96e2 Set back to development (#3423) 14 August 2020, 18:07:16 UTC
f1c8010 Prep for release (#3422) * Prep for release 14 August 2020, 15:33:04 UTC
50e3903 speed up trigger fitting (#3412) * speed up fit trigs * faster there too * minor cleanup * add more comments * one more comment * minor spacing/comments changes * minor tweaks to comments and verbose output Co-authored-by: Thomas Dent <thomas.dent@usc.es> 14 August 2020, 13:09:13 UTC
e1c8bc0 Parallelize optimal_snr jobs (#3413) * add in codes and workflow to parallelize optimal_snr 13 August 2020, 11:05:38 UTC
b5ef304 MultiIFO workflow singles development (#3286) * Single-trigger handling - calculate single stat in general case, p_astro calculation 13 August 2020, 08:17:19 UTC
388b5ef improvements to pycbc_make_skymap (#3419) * make it easier to just get the losc strain channel * less inobvious hard coding in pycbc make skymap * fixes 12 August 2020, 19:10:38 UTC
88cc27c Fix exception handling in inference data utils module (#3416) * Fix exception handling in inference data utils module * Simplify 12 August 2020, 16:13:07 UTC
93fcca8 Convenience improvements to examples/docs (#3417) 12 August 2020, 15:07:39 UTC
dce1da8 Created option to set a high-frequency cutoff in pycbc_make_skymap (#3414) * Started adding high-frequency cutoff. * Implemented high-frequency cutoffs. Changes: -Added a --f-upper option to pycbc_make_skymap. It passes those to pycbc_make_single template and SingleCoincForGraceDB. -Added high-frequency cutoff to SingleCoincForGraceDB. PSDs may now be truncated at a high-frequency cutoff. * Wrapped lines for CodeClimate. * Finished implementing a high-frequency cutoff for pycbc_make_skymap. Changes: -Reverted changes to pycbc/io/live.py -Made sure --f-upper option in pycbc_make_skymap is optional -Passing upper frequency limit to BAYSTAR via coinc_result 12 August 2020, 13:44:49 UTC
d68124c Update documentation (#3418) * Document options to read science and veto segments from XML files * Remove misleading sentence about Python 3 compatibility 12 August 2020, 13:33:50 UTC
50896ce add option to throughput plots to weight results by duration of job (#3411) * duration weighted throughput plot * test * fix * use harmonic mean 11 August 2020, 16:40:26 UTC
f39e1ec guess channel name from version (#3401) * guess channel name from version * try alternate 11 August 2020, 14:57:59 UTC
4e228f9 use pegasus with less requirements (#3408) 11 August 2020, 14:57:37 UTC
ef0218d PyCBC Live Test w/ Multiple HDF injections (#3322) * Multi-injection test for pycbc live * update run.sh * Updated test to address Tito's comments * testing * Please work * Fixed snr * Updated injection generation to reproduce an error * Fixed multi-inj test to not rely on h5py 5.10 * Addressed Tito's comments Co-authored-by: max.trevor <max.trevor@ldas-pcdev6.ligo.caltech.edu> 05 August 2020, 16:02:40 UTC
9cfab03 Added high-frequency cutoff to pycbc_single_template. (#3410) * Added high-frequency cutoff to pycbc_single_template. * Added check if high-frequency cutoff is given. 05 August 2020, 15:03:37 UTC
1e17651 save pvalue if used in far (#3409) 05 August 2020, 11:15:43 UTC
aeaaa91 fixing refcheck error. Better default for bkg output (#3407) 03 August 2020, 13:54:35 UTC
c080a81 Set back to development (#3405) 01 August 2020, 22:50:08 UTC
5f513c8 Prep for release (#3404) 01 August 2020, 20:55:24 UTC
3555bde Add lines needed to nonfsio pegasus site template to prevent grid running (#3399) 01 August 2020, 18:48:17 UTC
58c62ef Add try/except block around skcuda.fft import to ensure ImportError (#3403) * Add try/except block around skcuda.fft import to ensure ImportError * Address CC line length issue 01 August 2020, 18:47:17 UTC
74f3245 fix typo in ACT that's printed to screen (#3402) 31 July 2020, 18:57:51 UTC
72b8350 remove some unneaded numpy vectorizes and speed up det_tc (#3356) * We should be consistent about units * Do not use numpy vectorize * remove more numpy vect * no commit * cc 28 July 2020, 08:55:09 UTC
c6b6134 Fix error from missing http:// prefix to segments.ligo.org (#3398) 27 July 2020, 19:27:28 UTC
711fb32 Set back to development (#3397) 27 July 2020, 15:14:20 UTC
back to top