swh:1:snp:3a699297f000109a1bc833f294a54171df990207

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Revision Author Date Message Commit Date
b3b03f1 set for 1.5.7 release (#1239) 15 November 2016, 21:19:06 UTC
952a6fe Remove extraneous files (#1243) * rely on edgar to set the environment up on osg * removed old files 15 November 2016, 20:28:36 UTC
996e6b3 Incorrect syntax originally, a numpy float doesn't have the .isnan() option, use numpy.isnan(float) instead. (#1242) 15 November 2016, 19:35:00 UTC
222872e Documentation correction for pycbc_make_inference_workflow (#1221) * made changes to readme to test if git is working * spelling * correct documentation typo, add GPS_END_TIME to testing * corrected README * define OUTPUT_MAP_PATH environment variable * Fixed typo * Inference config file now references mass2 15 November 2016, 19:25:31 UTC
fb4e744 Add ability to gate data to pycbc inference (#1233) * add ability to save strain to inference hdf * add ability to apply gates, save strain, to inference * option to apply gates to overwhitened data; allow seperate gates to be applied to psd data * fix some bugs * rename save-psds to be consistent with other save/write options * update inference workflow docs 15 November 2016, 19:23:43 UTC
2f018c4 Update setup.py (#1240) 15 November 2016, 15:26:52 UTC
4892523 removed extraneous environment variables (#1238) 15 November 2016, 15:26:45 UTC
afbad7b Update README.md (#1237) 15 November 2016, 12:09:38 UTC
287a4b7 set the main workflow name for osg (#1236) 15 November 2016, 02:37:42 UTC
7ee8471 Be less verbose (#1235) 15 November 2016, 00:22:05 UTC
4469899 Add static libraries that lalapps is missing (#1234) * add static libraries that lalapps is missing * remove old bundling instructions 14 November 2016, 21:57:41 UTC
ae59958 cache the pip directory (#1232) 14 November 2016, 20:11:17 UTC
b3be99e Use the automatic Zendo release for the DOI (#1231) * reference the doi on zendo * clarify that the badge is the latest release 14 November 2016, 17:16:53 UTC
8958c72 added information on citing pycbc (#1228) 14 November 2016, 15:24:59 UTC
c33ac80 Set back to development (#1227) 14 November 2016, 04:14:22 UTC
cdf85df Tag for 1.5.6 release (#1226) * added url for the lalsuite github repository * set to v1.5.6 14 November 2016, 02:08:10 UTC
6a9ac50 Encode html and parse append-site-profile properly (#1225) * encode html and parse append-site-profile properly * set an empty path now the glidein sets it properly * fixed bugs found in testing 14 November 2016, 02:07:59 UTC
6a2f316 Default to N chisq bins in case of NaN (#1219) * default to 3 chisq bins in case of NaN * add a default bin option * use logging and fix typo * Use the default if less than 2 chisq bins * set the minimum number of chisq bins * catch the case where there is no minimum set * error could be cause by negative chisq bins 13 November 2016, 21:56:22 UTC
2040531 PSD estimation workflow: don't average over detectors in single ifo workflows (#1212) 13 November 2016, 20:21:17 UTC
f8fdf0a handle case where sigma labels would be below recorded background (#1216) 13 November 2016, 20:20:20 UTC
c35b762 geom_aligned_bank: fix syntax error from #1144 (#1217) 13 November 2016, 20:19:34 UTC
b9db004 Add the root workflow name to the sub-workflows (#1223) * Add the root workflow name to the sub-workflows * Add the root workflow name to the sub-workflows 13 November 2016, 19:54:29 UTC
ca03915 Add thin_end to fp.read_samples. (#1215) 11 November 2016, 17:43:43 UTC
c7c85d1 Added code to determine optimal orientation for a detector at a given GPS time (#1218) * Added optimal orientation calculation * Fixed typo * Trailing whitespace 10 November 2016, 18:27:17 UTC
5ce8deb remove pylal from pycbc (#1213) 10 November 2016, 13:45:09 UTC
2d2cbff Add quotes so the user doesn't write a file. (#1206) 08 November 2016, 17:11:46 UTC
32b9c0b Update instructions since pip has removed the --process-dependency-links option (#1201) * Tell pip to bring in all the dependencies * Fixed typo that hid instructions to update pip * Point to new DASWG repository page * removed link as process dependency links has been removed from pip * fix instructions to remove process-dependency-links * removed deprecated dependency_links * get mpld3 from pypi 08 November 2016, 15:37:10 UTC
fb6b779 Change default waiting time to kill held jobs (#1205) 08 November 2016, 15:20:51 UTC
eae77cf Add --filterbank-gain 1.0 since gain of filterbnk is 0.0 if no active injection. (#1203) 08 November 2016, 14:36:48 UTC
71f769e pnutils: use SEOBNRv2_ROM_DoubleSpinHI for time-freq track (#1202) 07 November 2016, 19:08:57 UTC
431a406 Give dashboard longer to respond (#1200) 07 November 2016, 14:08:52 UTC
acc5118 SEOBNRv4 ROM requires LAL to have HDF5 (#1199) 07 November 2016, 11:30:39 UTC
e9bd19d Reset back to development 05 November 2016, 18:01:44 UTC
6353ed4 Set for 1.5.5 release (#1197) 05 November 2016, 17:55:36 UTC
282dc8a set path for release 8 which contains the SEOBNRv4 data (#1196) 05 November 2016, 17:22:41 UTC
04a547b If datafind returns CVMFS urls then they can also be used on OSG (#1195) * if datafind returns osg compatable pfns store them for osg as well * fixed typo in documentation * provide old path until new path has propagated * LAL_DATA_PATH is not actually a path, so just give the old location for now * add a the gsiftp server as a second backup 05 November 2016, 14:50:34 UTC
1090967 Fix for the X509_USER_PROXY issue with workflow submission (#1194) * force the user to have a valid proxy * handle the refresh of the cert in the scripts * fixed section header * remove mention of pylal * fixed bash typo * allow the user to tell pegasus where an executable is * clean up documentation * set the pegasus home to /usr * fix stylistic issues 04 November 2016, 21:56:50 UTC
b526344 Documentation correction for pycbc_make_inference_workflow (#1193) * made changes to readme to test if git is working * spelling * correct documentation typo, add GPS_END_TIME to testing * corrected README * define OUTPUT_MAP_PATH environment variable * Fixed typo 04 November 2016, 20:41:26 UTC
bf18287 Add corner to install required. (#1191) * Add kombine version and corner to install required. * remove kombine version since there's this outdated 1.1 version. 04 November 2016, 18:53:27 UTC
5164826 Update install and run instructions (#1190) * moved old install script to tools directory * made new install script executable * update OSG running instructions for Pegasus 4.7.1 * pruned environment variables as the glidein script now takes care of them * use consistent example path * use VIRTUAL_ENV rather than NAME * add note about make -j * add instructions for lalapps executables * tell the user where to clone lalsuite * make it clear that HDF5 is SL6 only * install Pegasus 4.7.1 * fixed bugs in install instructions * tell the user to upgrade setuptools and pip * add note to say that pylal must be manually installed if needed 04 November 2016, 16:43:37 UTC
ba55168 follow-up fix to #1183: cover all cases correctly (#1184) 04 November 2016, 15:59:34 UTC
88b6ec3 Splitbank injection/full-data separation (#1186) * Move workflows in hdfcoinc directory * Update setup.py with move * Split banksplitter for injs and full-data * Tags are lists. Always. 04 November 2016, 11:37:31 UTC
c015a8a Fix end interval in pycbc_inference checkpointing and add --checkpoint-fast (#1178) * Some PEP8 in pycbc_inference. Add option to skip calculating ACL/evidence every checkpoint. Use pycbc logging. * Fix typo. Use __file__. * ws * Fix end interval. 02 November 2016, 16:46:51 UTC
a875243 Add --config-overrides to pycbc_inference (#1170) * Add overrides. * Pass iterable with [section, key, value]. 02 November 2016, 16:05:48 UTC
a753e9b Changes needed to run on OSG in ER10 (#1182) * moved old install script to tools directory * made new install script executable * fixed a bug in the cache file parsing cause by not resetting the IFS * clean up osg site template for OSG 3.3 * Revert "clean up osg site template for OSG 3.3" This reverts commit 2e3455b41f161fd338c6f7d677cf9c14f83a2662. * less agressive cleanup of osg site template * removed debugging statement * clean up pegasus database query code * working version for osg 3.3 * fixed return from sqlite3 * add a flag to tell weave not to create a temporary directory 01 November 2016, 23:32:10 UTC
2c01cec base the behavior of --fixed-weave-cache on env. var. FIXED_WEAVE_CACHE (#1183) * Revert "fixed-weave-cache: if running a 'frozen' 'onefile' PyInstaller bundle," didn't work for all cases This reverts commit 71977f24f99225940359e88d22222a2d45c78476. * base the behavior of --fixed-weave-cache on env. var. FIXED_WEAVE_CACHE - if it is set, take its value as a path to the weave cache - if it is not and the app is a PyInstaller bundle, use its directory - if none of the above, use $PWD/pycbc_inspiral 01 November 2016, 23:28:50 UTC
2ec859f Add more detail to throughpyt plots (#1164) 01 November 2016, 14:32:37 UTC
4e352d0 speed up logsignal term (#1177) * speed up logsignal term * ws 01 November 2016, 09:37:24 UTC
0dabfaa fixed-weave-cache: if running a 'frozen' 'onefile' PyInstaller bundle, (#1180) point PYTHONCOMPILED to the bundle directory 31 October 2016, 14:53:08 UTC
943cf0c Fix fitstat (#1176) * stat.py : added alan-ibrated fitting stat * stat.py: slight simplification of new stat * Add combined O2 stat, also use 0,1 numbering for sngl stats * fix phasetd stat 28 October 2016, 14:19:12 UTC
9d39fc1 Function to get the frequency of the hybrid MECO (#1139) * Function to get the frequency of the hybrid MECO * Set 1 as default for the quadrupole terms * New expression for the hybrid energy and improvements for the minimize algorithms * Implement most of SideCi comments * Final (hopefully) version of the hybrid energy * Fix some of the landscape issues * Trailing whitespace removal 27 October 2016, 13:06:17 UTC
e389100 Fix fitstat (#1173) * stat.py : added alan-ibrated fitting stat * stat.py: slight simplification of new stat * add dtypes to stat classes (#1159) * add dtypes to stat classes * ws * modularize signal likelihood in the phasetd class, add stub for combined phase and exp fit stat * add comment * remove stub class * Add combined O2 stat, also use 0,1 numbering for sngl stats * coinc_findtrigs: clean up help msg formatting 26 October 2016, 20:28:56 UTC
2e8e9bb add the coinc class (#1161) * add coinc classes * update documentation * style * update style * style * ws * ws * landscape * make ring buffer resizing .. f resize * ws * ws * ws * ws 26 October 2016, 17:46:17 UTC
3df934e allow multiple statistic-files options (#1171) * allow multiple statistic-files options * style improvements requested by Tom 26 October 2016, 10:06:52 UTC
53c8868 Add memory statements for aligned bank (#1144) 25 October 2016, 09:52:16 UTC
9a3c869 add dtypes to stat classes (#1159) * add dtypes to stat classes * ws * modularize signal likelihood in the phasetd class, add stub for combined phase and exp fit stat * add comment * remove stub class 22 October 2016, 22:21:20 UTC
ffe8d11 Use relative-dir not relative-submit-dir (#1169) * Use relative-dir not relative-submit-dir * Whitespace 22 October 2016, 21:34:18 UTC
d41a925 Pylalectomy : no longer use pycbc-pylal functions in binned volume integral (#1131) * fixing bin utils, rate and sensitivity functions * add back old binned trig fitting code * Removing old sqlite-based postproc and gstlal mimicking thingies * sensitivity and rate: formatting and whitespace * sensitivity.py: typos and cleanup docstring * sensitivity.py : add pylal binned sensitivity functions * added rate and bin utils modules for binning and pylal-style sensitive volume calculation * bin_utils: fix min and max overwriting builtins * sensitivity.py: fix input overwriting a builtin * rate.py: remove unused kwarg, more comments 22 October 2016, 21:33:29 UTC
3cb5b9c pycbc_banksim: variable low-frequency cutoff and cleanup (#1158) * pycbc_banksim: cleanup and move to logging module * pycbc_banksim: enable per-template low-frequency cutoff * pycbc_banksim: further cleanup * Ian's comment * Doh 21 October 2016, 15:04:07 UTC
176236f set site to nonlocal if file is not accessible (#1162) * set site to nonlocal if file is not accessible * handle case of file url as request by Duncan B. * ws 21 October 2016, 09:36:41 UTC
bf9e95a fail status if channel cannot be read (#1160) * fail status if channel cannot be read * update 20 October 2016, 17:45:20 UTC
f7d9dc2 Fix fitstat (#1167) * stat.py : added alan-ibrated fitting stat * stat.py: slight simplification of new stat 20 October 2016, 17:20:03 UTC
ca5730d Revert "Fix fitstat" (#1166) Try again with the tweaked network-snr-like stat 20 October 2016, 14:14:51 UTC
9ea2dab Allow exemption for pegasus-profile section (#1165) 20 October 2016, 13:45:32 UTC
7b80d4b Ability to save low-frequency cutoff into bank XML files (#1148) This is needed for the uberbank workflow to produce a consistent bank when the variable cutoff is used in sbank. 19 October 2016, 14:18:53 UTC
8332075 Fix local-site-scratch variable (#1153) 18 October 2016, 19:16:24 UTC
69390e9 Fix fitstat (#1155) * stat.py : added alan-ibrated fitting stat * stat.py: slight simplification of new stat 18 October 2016, 18:02:59 UTC
e92d433 allow profile to be overriden (#1152) 18 October 2016, 14:11:13 UTC
8ef9049 Force backwards compatibility for submit directory layout (#1151) 17 October 2016, 21:11:24 UTC
ad3decf Segment errmsg (#1150) * clarify error msgs, clean up/shorten comments * whitespace! * removing a redundant message, clarifying no segment message 15 October 2016, 23:15:57 UTC
0f9d091 Code for splitting a given compressed template bank into smaller banks in hdf5 format (#1142) * Code for splitting a given compressed template bank into smaller banks in hdf5 format * Added description to arguments, added checks for input arguments that are required, closed output files in pycbc_hdf5_splitbank, made start and stop indices keyword arguments and added doc strings for those in bank.py * removed white space * Fixed sideci issues in bank.py * removed white spaces * Addressed sideci error:Added blank line 14 October 2016, 09:08:20 UTC
dfb3c71 Add spin magnitude and angles to generators. (#1137) * Add spin magnitude and angles to generators. * Use .format for string. 13 October 2016, 21:05:59 UTC
bfcff8f Fix fitstat (#1147) * expfit stat: fix mysterious bugs from previous pulls * Dont hard-code name of stat to be combined newsnr 13 October 2016, 13:46:15 UTC
3582e62 Revert "Hide message that says 'setting weave blah blah'" (#1145) 12 October 2016, 20:20:27 UTC
1be9c29 Implementing injection-filter-rejector in PyCBC (#1143) * Implementing injection-filter-rejector in PyCBC * Code quality changes * More sideCL changes * More code quality improvements, adding init * Actually adding __init__ file * Still working on code quality * Final time (hopefully) 12 October 2016, 14:44:40 UTC
a2ff53b Support for SEOBNRv4 peak freq and auto log-z for plot_singles_vs_params (#1141) * plot_singles_vs_params: auto log z if needed * Add ability to use SEOBNRv4 peak frequency 11 October 2016, 21:22:33 UTC
90d685d Indent function. (#1138) * Indent function. * ws * ws 11 October 2016, 16:50:30 UTC
662e7fe Use set operations to add a list of functions to call before waveform generation in Generators (#1134) * Replace_pregenerate with a list of pregenerate functions. * Update docstring. * ws * ws 11 October 2016, 09:19:45 UTC
27a8a0e Use self.params and self.bounds from _BoundedDist for Gaussian. (#1132) * Use self.params and self.bounds from _BoundedDist for Gaussian. * ws 10 October 2016, 14:52:41 UTC
9d6e356 Make get_slice an instancemethod. (#1130) * Make get_slice a instancemethod. * ws and import fix. 07 October 2016, 14:34:26 UTC
c46dca3 Hide message that says 'setting weave blah blah' (#1129) * Hide message that says 'setting weave blah blah' * Hide other message too 07 October 2016, 10:05:23 UTC
3daa56e remove redundant flag option (#1128) 07 October 2016, 07:36:29 UTC
453ab80 performance tweaks of the batch correlate and inner product functions. (#1124) * slightly increase performance * add mfilter part * minor style improvements * fix start * update unittest 05 October 2016, 15:51:47 UTC
68d2fc2 add explicit analysis flags options (#1121) * add explicit analysis flags options * ws * indent * .. * indent 05 October 2016, 15:23:09 UTC
707a40e add gracedb submit class (#1122) * add gracedb submit class * ws * codacy * ws * indent 05 October 2016, 15:19:38 UTC
6bbd6b9 add flag option to frame status methods (#1120) * add flag option to frame status methods * ws * ws 05 October 2016, 15:18:48 UTC
f3c99c9 pycbc_plot_singles_timefreq: fix absurd memory usage and error with SEOBNRv4 (#1127) * Fix wrong function name * pycbc_plot_singles_timefreq: fix absurd memory usage Load triggers via the HFile class and its select() method to avoid reading huge datasets at once. Also modify that class to optionally return a list of indices passing the selection function. 04 October 2016, 19:19:37 UTC
3a432cd Improving handling of IPN sky points files 04 October 2016, 15:10:44 UTC
0ff416d fix caching again (#1123) 03 October 2016, 12:15:24 UTC
a4e9c16 Display what parameters are input and output for pycbc.waveform.generator functions (#1118) * Use decorator to say what parameters to use and output. * ws 01 October 2016, 13:22:43 UTC
755d780 Remove gwpy executable and use pycbc_plot_hwinj in PCAL saturation script (#1116) * Rm gwpy executable. * Use pycbc_plot_hwinj instead of gwpy. * Formatting. * uncomment SVN checkout 30 September 2016, 17:59:59 UTC
fb59599 Adds spin magnitude and angles Parameter classes (#1117) * Update docstring. * Add spin magnitude and angle Parameter instances. * Fix varname. * Fix LaTeX. * Remove underscores to match cartesian. * Change tag name. * Use smaller functions to calculate spherical coords. * ws * Rename to azmuthal and polar. * ws * Fix spelling mistake. 29 September 2016, 23:38:32 UTC
8c5f16c Install script use non-deprecated lalsuite env script (#1115) * Change lalsuite env script. * update docs. 29 September 2016, 15:25:06 UTC
5aca5df Add cartesian and spherical coordinates map (#1114) * Add coordinates module. * ws * Don't actually have to check types except for either y or x. * ws 29 September 2016, 11:56:48 UTC
dd9167c uberbank workflow: give optional option a default (#1112) 28 September 2016, 16:03:14 UTC
1ab7070 allow compressed waveforms to be decompressed even if their hdf files were closed (#1107) 28 September 2016, 09:53:03 UTC
e98ab30 Add pregenerator to class. (#1110) 28 September 2016, 06:58:53 UTC
7c792d9 Standarize Gaussian distribution input. (#1103) * Standarize Gaussian input. * Add line. * Add whitespace * Whitespace 27 September 2016, 13:56:39 UTC
5632dad Add pregenerator function for mchirp q to mass1 mass2. (#1108) * Add pregenerator function ofor mchirp q to mass1 mass2. * Fix var name. * Fix docstring. 27 September 2016, 08:36:25 UTC
8476ab6 Add various helpers for SEOBNRv4 (#1099) * Fix broken imports in test_lalsim * Add SEOBNRv4 duration, RD and final freq support 27 September 2016, 07:45:03 UTC
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