swh:1:snp:3a699297f000109a1bc833f294a54171df990207

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Revision Author Date Message Commit Date
e8a5532 Set for 1.7.4 release 12 July 2017, 14:36:27 UTC
0975166 Add an executable to create injection distributions (#1770) * add create_injections, updates to option_utils * add create_injections to setup.py * add help message describing config file syntax 12 July 2017, 14:01:49 UTC
02b913d Set for 1.7.3 release (#1775) * set for 1.7.3 release * install specific pylal for grb 12 July 2017, 12:26:52 UTC
a6771ec Update inference.rst 12 July 2017, 12:13:30 UTC
cbee26a do not deploy master to cvmfs 12 July 2017, 00:11:09 UTC
729c789 Check dest exists before stat 11 July 2017, 23:24:45 UTC
5ceccb8 removed debugging code 11 July 2017, 20:53:12 UTC
a41cc1b Update configuration.py 11 July 2017, 20:49:36 UTC
9b210de add missing import 11 July 2017, 20:49:36 UTC
5761e84 handle src and dest are same 11 July 2017, 20:49:36 UTC
1a625ea fix typo 11 July 2017, 20:48:56 UTC
a3d734d use ecp cookie compatible download code 11 July 2017, 20:48:56 UTC
b72c530 Use v1.5 image with ecp-cookie-init 11 July 2017, 19:45:38 UTC
e69a9bb Use v1.1 LDG base image with ecp-cookie-init 11 July 2017, 19:45:11 UTC
2c5cb4b add a debugging statement 11 July 2017, 18:56:34 UTC
4be3ba2 use string master not latest for install of head 11 July 2017, 15:00:04 UTC
55f81d7 simplify the qtransform module a bit, add convenience method (#1774) * qscan cleanup * simplify * Update qtransform.py * Update timeseries.py 11 July 2017, 14:25:03 UTC
1753345 install curl to get pegasus gpg key 11 July 2017, 14:19:29 UTC
f6c3293 Run the workflow test using an ECP authenticated server (#1780) * pass both tag and venv path * run workflow test using ecp cookies 11 July 2017, 14:18:27 UTC
6d01451 install pegasus for workflow testing 11 July 2017, 14:12:26 UTC
5e090ac fixed landscape error 11 July 2017, 13:37:14 UTC
f1ae2eb catch a sign in redirect on code.pycbc 11 July 2017, 13:37:14 UTC
5596339 handle a redirect from code.pycbc to git.ligo.org 11 July 2017, 13:37:14 UTC
8d2f64e fix codebeat issue 11 July 2017, 13:37:14 UTC
7eb8998 fix landscape issues 11 July 2017, 13:37:14 UTC
d69e02e check for a sign-in redirect 11 July 2017, 13:37:14 UTC
6152710 clean up url code and allow ecp cookies 11 July 2017, 13:37:14 UTC
f09c0fe require the requests package with retries 11 July 2017, 13:37:14 UTC
bf33b8a add uuidgen for workflow testing 11 July 2017, 13:25:27 UTC
09823dd Delete autochisq_test.py (#1779) This file was renamed test_autochisq at some point, but the old name still persisted. Just spent some time figuring out why this file doesn't work ... Answer: it's 3 years out of date and needs deleting. 11 July 2017, 12:12:35 UTC
cdc7eae add the ligo repos and keyring 11 July 2017, 11:14:03 UTC
1cc7294 add tools needed for secure build 11 July 2017, 10:43:50 UTC
b500269 fixed typo in shell variable 11 July 2017, 10:41:06 UTC
ecf95d6 add convenience whitening method (#1771) * add convenience whitening method * Update timeseries.py 11 July 2017, 10:26:25 UTC
5bcedec pass the full venv path to test workflow 11 July 2017, 09:58:24 UTC
bcb2ab7 Revert "Revert "Add build for Debian virtual environment" (#1776)" This reverts commit 891994c5246e5e41805b7aaae6539fb79595c86d. 11 July 2017, 09:58:24 UTC
891994c Revert "Add build for Debian virtual environment" (#1776) * Revert "Add option in pycbc_ringinj to taper time-domain ringdown (#1766)" This reverts commit 31db6f8f015dd4c4605172803cc3266b67bcad95. * Revert "Add build for Debian virtual environment (#1756)" This reverts commit d4eb7ee7b69940a54b1a505bead656e98618f34c. 11 July 2017, 08:22:10 UTC
31db6f8 Add option in pycbc_ringinj to taper time-domain ringdown (#1766) 11 July 2017, 08:21:09 UTC
d4eb7ee Add build for Debian virtual environment (#1756) * resoved confict in docker image name * added debian virtual environment build * use tom's image for both jessie build * resoved confict by keeping pycbc docker image * install pip since ligo/lalsuite-dev does not have it 11 July 2017, 07:28:35 UTC
902b5c6 Use git.ligo.org for E@H test data on Travis (#1759) * move rom bank file to travis directory * make the download url an option * use git.ligo.org for eah travis tests * silence wget progress message * Revert "silence wget progress message" This reverts commit 5e7f01866881b9b22957b7b7bed8a885b87d6076. * fix download url * fix download url * Revert "Revert "silence wget progress message"" This reverts commit 0ccb6469ccfbdd8975cb9f0f38892a5e40fe4761. 10 July 2017, 20:41:29 UTC
197fcbe delete unused injection functions (#1769) * delete unused injection functions * Update inject.py * Update inject.py 10 July 2017, 13:59:05 UTC
f331f55 add convenience method to call the welch psd estimation (#1767) * add convenience method to call the welch psd estimation * Update timeseries.py * Update timeseries.py 06 July 2017, 22:39:11 UTC
4815ba3 add ability to generate gaussian noise from name of psd (#1768) * add ability to generate gaussian noise from name of psd * Update __init__.py Following procedure of commenting out warnings/errors in landscape that are incorrect (or in this case, because of how we are using init files). * Update __init__.py Trying again * Update __init__.py Trying again. * Update gaussian.py 06 July 2017, 22:28:38 UTC
22b04a4 fix bug in concatenate in new numpy versions (#1765) 05 July 2017, 13:51:05 UTC
95fac7b add helper to get a slice of a time series using actual times (#1764) * add helper to get a slice of a time series using actual times * change name to time slice 03 July 2017, 15:49:40 UTC
ab66cee Fixed maximum q-tile bug in q-plane generator function. (#1762) 30 June 2017, 12:50:02 UTC
aab69db E@H build: install six unconditionally (#1760) - a certificate issue prevents six from being installed via dependency on Debian4 in a 'clean' E@H build 27 June 2017, 12:01:08 UTC
57099e6 Start of pycbc qtransform inspiral integration (#1755) * first test commit after recovery * removed system import quickfix line * pycbc_inspiral_main edits 1.) removed highpass filter 2.) removed redundant recalculation of segment psd 3.) changed variable names * Moved generic h5py save/load function to hdf.py * renamed pertinent pycbc_inspiral qtransform functions pycbc_insp_main -> inspiral_qtransform_generator pycbc_insp_tiling -> inspiral_tiling * Fixed landscape and codacy errors * Alex comments 1.) use frequency series duration and sample_rate attributes 2.) removed redundant changes to tdenergy variable * arg parser option 1.) Added option to in argument parser to perform q-transform or not 2.) Reworded function description in qplane * Fixed syntax error in pycbc_inspiral * Removed pycbc highpass_filter and welch modules from imports * Removed debugging line in qplane function * Alex suggested edits 1.) output is now compatible with events.py 2.) old version of fft/ifft in qtransform function reimplemented 3.) removed variables with capitals in names * removed print statement on line 71 of inspiral_qtransform_generator function * pycbc_inspiral edits 1.) changed qtransform option name 2.) edited qtransform if/else statements * fixed namespace error * Removed trailing whitespace in events.py 26 June 2017, 22:08:32 UTC
1148509 add a comment to fix travis issues 26 June 2017, 17:04:03 UTC
28d4cc7 fixed typo in travis build 26 June 2017, 17:00:03 UTC
bbb86ce travis upgrade has broken docker image creation It appears that the last successful Docker image creation is https://travis-ci.org/ligo-cbc/pycbc/jobs/245400744 which is prior to the recent Travis upgrade to Ubuntu Trusty 14.04 https://blog.travis-ci.com/2017-06-21-trusty-updates-2017-Q2-launch I initially thought that this was similar to the problem @spxiwh fixed with https://github.com/ligo-cbc/pycbc/commit/ba6b50d4709354c147bdf25cb9dfd82fe2ee3b7b#diff-cdb0dd972a7b3681484b6c575f60b9a4R160 but it appears to be more complicated than that. So that the pycbc-el7:latest docker image is not broken, I have undone the changes in commits https://github.com/ligo-cbc/pycbc/commit/e6917b71c146c40bf7b3282c5f9967b1a4995832 and https://github.com/ligo-cbc/pycbc/commit/398ad531b9b882e8675b3f1aee229029bcf176f2 and added the line group: deprecated-2017Q2 to use the old Travis build image as described in the above Travis page. This will need to be fixed properly by September 1st, 2017 when this old image is removed. 26 June 2017, 16:49:29 UTC
398ad53 install the requirements to fix the docker image 26 June 2017, 16:15:26 UTC
e6917b7 do not stall on host key checking 26 June 2017, 15:41:34 UTC
6466308 Fixed typo in PyCBC Docker image name introduced in https://github.com/ligo-cbc/pycbc/pull/1757 26 June 2017, 14:44:56 UTC
6c2eb8d Pull PyCBC docker images with a specific tag and switch to git.ligo.org (#1757) * add version number to docker images * download files from git.ligo.org * get configuration files from github * add extra messages to prevent timeout * report download progress to prevent travis stall 26 June 2017, 14:29:48 UTC
b60402a Remove unused import (#1754) Landscape says "remove this". I obey. 21 June 2017, 14:45:41 UTC
ad69f36 Addressing landscape issues (#1751) 19 June 2017, 08:06:21 UTC
2f05a79 Enable splitbank code to write template duration in sub banks (#1749) 18 June 2017, 16:54:05 UTC
047fcb8 pycbc_live: survive GraceDB errors (#1750) * pycbc_live: survive GraceDB errors * pycbc_live: fix PSD selection for single-ifo events 17 June 2017, 19:28:42 UTC
e1b3719 pycbc_live: misc improvements during ER11 (#1748) * pycbc_live: list followup detectors in various LIGOLW table fields * pycbc_live: tag some log messages with their detector * pycbc_live: test GraceDB access on startup 17 June 2017, 15:40:49 UTC
dfc947c pycbc_live: fix more errors from pre-ER11 (#1747) 16 June 2017, 12:05:47 UTC
da55fb1 Set back to development 15 June 2017, 16:13:40 UTC
d59e662 set for 1.7.2 release (#1743) 15 June 2017, 14:00:34 UTC
29df1b5 Add SCIENCE - CAT1 to A4 on summary pages (#1746) 15 June 2017, 14:00:24 UTC
23fd945 FIx two_column template (#1745) 15 June 2017, 13:59:59 UTC
e2431ad Various fixes/improvements to PyCBC Live (#1741) * Document some DQ flag definitions * pycbc.psd.welch: set epoch of PSD * pycbc_live: mark some basic options required * pycbc_live: more readable logging * pycbc_live: fix misspelled variable * Avoid error in StatusBuffer when asking for validity of short durations * pycbc_live: enable per-detector DQ flags, add Virgo good DQ flag * pycbc_live: don't use followup detectors that failed advancing 15 June 2017, 12:53:01 UTC
2198844 Silence numpy warnings in inference (#1744) * silence numpy warnings when transforming * put the silencing in the executable 15 June 2017, 00:36:36 UTC
23c3e1e first pass check (#1740) 13 June 2017, 15:00:59 UTC
36c1ef6 Remove global declaration (#1739) This removes the global declaration from fftw.py. 13 June 2017, 14:46:16 UTC
fc5b9af Fix in future.py (#1738) 13 June 2017, 12:31:27 UTC
3e37d56 Ensure strain is double precision (#1732) * ensure strain is double * add dyn range fac 12 June 2017, 21:59:22 UTC
6567b1b Cast to integer (#1735) Numpy now requires integer indexes. We had been abusing float-but-actually-integer (ie. 7.0) values here. A better fix would be to not use floats at all here, but this allows the code to run with current numpy. 12 June 2017, 18:30:02 UTC
780b5c5 Allow pycbc_inference to apply multi-dimensional constraints from ini file (#1688) * Change prior to prior_eval var name. * Import PriorEvaluator from prior not inference. * Add set_p0 changes. * Apply constraints to prior. * Whitespace. * Rename var. * Read constraints from config file. * Fix name conflict. * Update comments. * Update comments. * Remove unused imports. * Add import. * Make func required. * Fix function renamed. * Rebase and apply commit that fixes logpdf_scale. * Update comment. * Use FieldArray eval. * Rename attr. * Rename func to constraint_arg. * Check if FieldArray. conversion.py functions can return a non-iterable. 09 June 2017, 22:08:14 UTC
dce1f77 Triggered coherent segment generation upgrade (#1730) Can now handle arbitrarily many IFOs and will decide on best combination for selecting the analysis segment. Currently this is done only based upon duration. 09 June 2017, 21:04:23 UTC
5fabdd5 non-existant function was being called in det_tc (#1733) 09 June 2017, 18:05:57 UTC
ea78b78 Add distribution that is uniform in log base 10 (#1731) * Add uniform_log module. * Update docstring. * Fix typo. 08 June 2017, 16:42:15 UTC
7007a7a add a few more helper properties to FrequencySeries (#1729) 07 June 2017, 19:15:31 UTC
177e66f Set bounds for SinAngle with domain of the class. (#1728) 07 June 2017, 17:06:29 UTC
705c6da Remove io.sqlite module (#1721) * Remove io.sqlite module * forgot those 06 June 2017, 15:40:38 UTC
a033023 small fixes in the qtransform routines (#1726) * small fixes in the qtransform routines * simplify a bit more 06 June 2017, 12:38:24 UTC
86b7f9b add some helper properties (#1727) 06 June 2017, 09:10:51 UTC
5e80c68 pycbc_live: check state & DQ of followup detectors (#1722) * pycbc_live: check state & DQ of followup detectors * Fix error * Alex' comments * Simplification * Fix errors 04 June 2017, 13:33:42 UTC
690b6c5 Allow pycbc_inference_plot_movie to use transforms.py (#1716) * Allow pycbc_inference_plot_movie to use transforms * Add fix for option rename. * Change more output_file to output_prefix. 02 June 2017, 19:50:17 UTC
7d3b58f catch nans in prior (#1723) 02 June 2017, 19:16:07 UTC
ba6b50d Fix Travis issues (#1725) * Updates to requirements.txt * Ignore build directory products * Use pip to install requirements.txt * Typo fix * Try this to run build_and_test * Disable sudo 02 June 2017, 16:41:39 UTC
3205457 Allow FieldArray access to snr_from_loglr (#1718) * Allow FieldArray access to snr_from_loglr. * Update z_args. 31 May 2017, 17:23:44 UTC
c06cfc3 Add option to automatically create movie in plot_movie (#1685) * Add option to automatically create movie in plot_movie * Change option name * Change output option name 31 May 2017, 17:18:40 UTC
54445d1 Change the frequency cutoff names to satisfy the requirements of reading in asd from file (#1712) * Change the frequency cutoff names to satisfy the requirements of reading in asd from file * Update docs 30 May 2017, 23:53:48 UTC
e9568ce Replace FIXME for Python 2.6/2.7 conflicts (#1720) * Move to Python 2.7. * More 2.7. 30 May 2017, 22:30:52 UTC
4ebc2cd Allow UniformPowerLaw to use non-zero lower bounds (#1719) * Allow non-zero lower bound for power_law distribution. * Remove ValueError. * Fix docstring. * Fix docstring some more. 30 May 2017, 21:01:27 UTC
c8b4727 Fixed landscape errors (#1717) 30 May 2017, 18:37:51 UTC
2e090cc Update README.md 30 May 2017, 17:56:39 UTC
970233c Update website url and description in setup.py. (#1711) * Update website url and description in setup.py. * Update setup.py 30 May 2017, 09:43:18 UTC
08f6864 Q-plane interpolation and Q-plane spectrogram plotting mechanisms (#1714) * 1.) Addition of loudest Q-plane interpolation function (defined as Q-plane with maximum normalized Q-tile energy) 2.) Addition of Q-plane spectrogram plotting function. * Fixed Qplane non-default argument syntax error. * Added new directory command * Added os import * 1.) User has option to set own sampling rate. If none is set, then default native sampling rate of time series is used. 2.) Fixed codacy errors. 3.) Moved matplotlib imports to be within plotter function 4.) lower case for all functions 5.) unnecessary variables removed * sampling rate is set by default to native sampling frequency. * fixed codacy tres/fres error * Removed unused variable fig, peakq, and idx 30 May 2017, 08:24:18 UTC
183b70b Qtransform Dev (#1709) * 1.) Added Q-tiling mechanism. 2.) Simplified q-transform mechanism and its associated functions. * 1.) Added Q-tiling mechanism. 2.) Simplified q-transform mechanism and its associated functions. * 1.) Added Q-tiling mechanism. 2.) Simplified q-transform mechanism and its associated functions. * Added math import modules * added numpy imports of ceil, pi, log, and exp. Much faster than math. 29 May 2017, 10:57:33 UTC
e8f6c6b Remove unused imports in generator.py (#1705) 27 May 2017, 18:34:24 UTC
7c21b92 Update matchedfilter.py (#1707) Always allocate new correlation vector if not given as workspace memory. 27 May 2017, 14:26:48 UTC
2af6835 bugfix in normalization, inside compute_max_snr_over_sky_loc_stat (#1710) 26 May 2017, 20:52:40 UTC
d9357b3 After this patch, the qtransform seems to work correctly. Two issues … (#1703) * After this patch, the qtransform seems to work correctly. Two issues were fixed: 1. The window function was using duration rather than window_size in samples. 2. The inverse FFT was an rfft not a complex-to-complex transform, so the windowed data had the wrong convention. Renamed the file to remove the hyphen, so it can be imported. * Moved author list to copyright notice 25 May 2017, 17:40:15 UTC
8fdea4e Sample in different parameter space than variable args (#1693) * load sampling parameters in pycbc_inference * make prior, generator evaulate keyword args * update docs, fix bugs * transform between variable and sampling args in likelihood * add rvs function to likelihood * add apply_sampling_transforms to likelihood; fix bugs * use likelihood evaluators prior_rvs function to set p0 * transform samples before writing to file * save the sampling args to the output file * update gaussian likelihood * update pycbc_inference * fix typo * fix bugs * fix more bugs * ensure variable args are stored as lists * account for kde changing shape when saving state * fix typo * minor formatting * add support for emcee pt sampler * update set_p0 function * fix bugs * have compute_jacobian able to return arrays * update test script * address codacy issues 25 May 2017, 15:24:29 UTC
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