| 09be14e | Padraig Gleeson | 20 August 2024, 14:20:46 UTC | Merge pull request #196 from NeuralEnsemble/development Changes for NeuroML v2.3.1 release | 20 August 2024, 14:20:46 UTC |
| 8f60aca | Padraig Gleeson | 19 August 2024, 10:33:09 UTC | Merge pull request #200 from NeuralEnsemble/experimental To v0.6.3 - for NML v2.3.1 release | 19 August 2024, 10:33:09 UTC |
| 5957a51 | pgleeson | 19 August 2024, 10:13:57 UTC | Merge branch 'development' into experimental | 19 August 2024, 10:13:57 UTC |
| a7c827f | Ankur Sinha (Ankur Sinha Gmail) | 14 August 2024, 16:04:29 UTC | docs: correctly populate "others" Need to use a `finally` block, not an `else` block. | 14 August 2024, 16:04:29 UTC |
| 7d3be50 | Ankur Sinha (Ankur Sinha Gmail) | 14 August 2024, 15:13:20 UTC | docs: split component type docs to different pages This makes it easier to go through, links better to schema docs on docs.neuroml.org | 14 August 2024, 15:13:20 UTC |
| bbe0fa7 | Ankur Sinha (Ankur Sinha Gmail) | 14 August 2024, 14:23:05 UTC | chore: correct docstring The method does not return anything [skip ci] | 14 August 2024, 14:23:05 UTC |
| 456bc69 | Ankur Sinha (Ankur Sinha Gmail) | 14 August 2024, 13:25:11 UTC | fix(create-unbranched-groups): number in segment group id cannot be negative | 14 August 2024, 13:25:11 UTC |
| 2661c58 | pgleeson | 13 August 2024, 11:19:18 UTC | To v0.6.3 | 13 August 2024, 11:19:18 UTC |
| bc1322c | pgleeson | 13 August 2024, 11:17:23 UTC | Merge branch 'development' into experimental | 13 August 2024, 11:17:23 UTC |
| 2e17bdc | Padraig Gleeson | 13 August 2024, 10:50:26 UTC | Merge pull request #197 from NeuralEnsemble/feat/fix-morphs-without-modifying-object fix referenced morphs/biophysics: load from included files, add tests, add some error checking | 13 August 2024, 10:50:26 UTC |
| 2118502 | pgleeson | 13 August 2024, 10:45:03 UTC | Merge branch 'feat/fix-morphs-without-modifying-object' into experimental | 13 August 2024, 10:45:03 UTC |
| 81df7eb | Ankur Sinha (Ankur Sinha Gmail) | 12 August 2024, 14:04:24 UTC | test(utils): test loading of referenced morph/biophs | 12 August 2024, 14:04:24 UTC |
| 65f8521 | Ankur Sinha (Ankur Sinha Gmail) | 12 August 2024, 14:03:52 UTC | feat(utils): improve loading of referenced morph/biophys | 12 August 2024, 14:03:52 UTC |
| c3f0343 | Ankur Sinha (Ankur Sinha Gmail) | 09 August 2024, 18:24:03 UTC | wip | 09 August 2024, 18:24:03 UTC |
| 0ce6cc5 | Ankur Sinha (Ankur Sinha Gmail) | 09 August 2024, 15:54:03 UTC | feat(fix-morph/bioph): allow creating a deep copy This is for use-cases where we do not want to modify the original document at all, for example, visualization. | 09 August 2024, 15:55:33 UTC |
| 0d473b8 | Ankur Sinha (Ankur Sinha Gmail) | 09 August 2024, 15:45:42 UTC | chore: ignore xsd files from pre-commit | 09 August 2024, 15:53:08 UTC |
| c044eee | pgleeson | 07 August 2024, 13:11:04 UTC | Merge branch 'master' into experimental | 07 August 2024, 13:11:04 UTC |
| 7118fb6 | Ankur Sinha (Ankur Sinha Gmail) | 17 June 2024, 13:15:19 UTC | chore: remove shebangs from modules that are not executable These files are not to be executed directly, and so do not require a shebang. [skip ci] | 17 June 2024, 13:15:49 UTC |
| 4db530d | Ankur Sinha | 17 June 2024, 13:09:52 UTC | Merge pull request #194 from NeuralEnsemble/feat/3.13-fixes-do-not-enable-gha Feat/3.13 fixes do not enable gha | 17 June 2024, 13:09:52 UTC |
| 46bcd6f | Ankur Sinha (Ankur Sinha Gmail) | 17 June 2024, 12:48:48 UTC | feat: use `numpy<=2.0.0` until other libraries have caught up The one I know so far: - pytables: https://github.com/PyTables/PyTables/issues/1083 | 17 June 2024, 12:48:48 UTC |
| 0d3cb1b | Ankur Sinha (Ankur Sinha Gmail) | 17 June 2024, 12:44:57 UTC | fix(py3.13): `logger.warn` -> `logger.warning` | 17 June 2024, 12:47:23 UTC |
| f27b896 | Ankur Sinha (Ankur Sinha Gmail) | 17 June 2024, 12:35:57 UTC | chore: remove unneeded shebang [skip ci] | 17 June 2024, 12:35:57 UTC |
| b4d3e95 | Ankur Sinha (Ankur Sinha Gmail) | 14 June 2024, 13:26:16 UTC | chore: bump dev release to 0.6.2 [skip ci] | 14 June 2024, 13:26:16 UTC |
| 3ee1528 | Padraig Gleeson | 11 June 2024, 16:01:14 UTC | Merge pull request #189 from NeuralEnsemble/experimental feat!: regenerate for 2.3.1 | 11 June 2024, 16:01:14 UTC |
| 9f78e71 | Padraig Gleeson | 11 June 2024, 13:34:53 UTC | Ran ruff on all files | 11 June 2024, 13:34:53 UTC |
| bcea5a4 | Padraig Gleeson | 11 June 2024, 13:28:15 UTC | To v0.6.1; Update schema to latest - require specCap & init memb pot | 11 June 2024, 13:28:15 UTC |
| 259505c | Padraig Gleeson | 11 June 2024, 12:58:34 UTC | Regenerated nml.py locally & updated readme for regen | 11 June 2024, 12:58:34 UTC |
| b6f606e | pgleeson | 31 May 2024, 09:44:21 UTC | Add helper method fix_external_morphs_biophys_in_cell; use by default on XMLParser | 31 May 2024, 09:44:21 UTC |
| 31041b3 | Ankur Sinha | 30 May 2024, 17:38:20 UTC | Merge pull request #191 from NeuralEnsemble/feat/disable-memb-pot-validation-adding feat(memb-pots): do not validate on addition | 30 May 2024, 17:38:20 UTC |
| 6bc7046 | Ankur Sinha (Ankur Sinha Gmail) | 30 May 2024, 17:36:13 UTC | feat(memb-pots): do not validate on addition These need to be set individually, and validation failing at each step will not work. | 30 May 2024, 17:36:13 UTC |
| a767b2b | Ankur Sinha | 30 May 2024, 17:21:07 UTC | Merge pull request #190 from NeuralEnsemble/feat/build-time-validation Enable toggling of build time validation | 30 May 2024, 17:21:07 UTC |
| 16d2d91 | Ankur Sinha (Ankur Sinha Gmail) | 30 May 2024, 17:19:55 UTC | chore: add contributing doc [skip ci] | 30 May 2024, 17:19:55 UTC |
| d243bca | Ankur Sinha (Ankur Sinha Gmail) | 30 May 2024, 17:13:55 UTC | chore: add versionadded | 30 May 2024, 17:13:55 UTC |
| 09fdbc5 | Ankur Sinha (Ankur Sinha Gmail) | 30 May 2024, 17:12:39 UTC | feat(validation): enable global toggling of validation Fixes #158 | 30 May 2024, 17:12:39 UTC |
| 477fac7 | pgleeson | 28 May 2024, 10:56:09 UTC | To v0.6.0 | 28 May 2024, 10:56:09 UTC |
| 5fecd24 | Ankur Sinha (Ankur Sinha Gmail) | 08 May 2024, 17:28:26 UTC | test(nml): update tests to include spikeThresh | 08 May 2024, 17:28:26 UTC |
| 6d3add6 | Ankur Sinha (Ankur Sinha Gmail) | 08 May 2024, 17:21:29 UTC | feat!: regenerate for 2.3.1 BREAKING CHANGE: `spikeThresh` is now a compulsory field | 08 May 2024, 17:21:29 UTC |
| 5dcc898 | Padraig Gleeson | 29 April 2024, 16:55:03 UTC | Merge pull request #188 from NeuralEnsemble/experimental Test on macos-14, which will become default mac-latest version | 29 April 2024, 16:55:03 UTC |
| b406341 | pgleeson | 29 April 2024, 16:46:38 UTC | merge macos-latest and macos-14 | 29 April 2024, 16:46:38 UTC |
| 9e745ee | pgleeson | 29 April 2024, 16:45:21 UTC | Merge branch 'development' into experimental | 29 April 2024, 16:45:21 UTC |
| 5810442 | Padraig Gleeson | 17 April 2024, 09:28:52 UTC | Tweak to trigger GHA on development branch | 17 April 2024, 09:28:52 UTC |
| 0b7a78c | pgleeson | 17 April 2024, 09:16:35 UTC | Better test for macos-14 in GHA | 17 April 2024, 09:16:35 UTC |
| 790fd9d | Padraig Gleeson | 15 April 2024, 17:33:16 UTC | Update ci.yml | 15 April 2024, 17:33:16 UTC |
| d0fc7bf | pgleeson | 11 April 2024, 15:42:26 UTC | Test src install tables | 11 April 2024, 15:42:26 UTC |
| 057dc56 | pgleeson | 11 April 2024, 15:35:33 UTC | Test on macos-14 | 11 April 2024, 15:35:33 UTC |
| 4c5ffef | Ankur Sinha (Ankur Sinha Gmail) | 05 March 2024, 14:41:06 UTC | chore(readme): sync to development [skip ci] | 05 March 2024, 14:41:06 UTC |
| 7e3cb3b | Ankur Sinha (Ankur Sinha Gmail) | 05 March 2024, 14:40:38 UTC | chore(readme): update changelog [skip ci] | 05 March 2024, 14:40:38 UTC |
| bbc9cd1 | Ankur Sinha (Ankur Sinha Gmail) | 05 March 2024, 14:38:21 UTC | chore: to 0.5.9 [skip ci] | 05 March 2024, 14:38:21 UTC |
| 9dd1ef6 | Ankur Sinha (Ankur Sinha Gmail) | 05 March 2024, 14:37:29 UTC | chore: update readme | 05 March 2024, 14:37:29 UTC |
| 743ee47 | Ankur Sinha (Ankur Sinha Gmail) | 05 March 2024, 14:35:36 UTC | chore(nml): update method docs and type hint [skip ci] | 05 March 2024, 14:35:36 UTC |
| f268dc7 | Ankur Sinha | 05 March 2024, 14:33:09 UTC | Merge pull request #187 from NeuralEnsemble/feat/get-unbranched-segment-groups Extend `get_segment_groups_from_substring` to include an `unbranched` filter | 05 March 2024, 14:33:09 UTC |
| 7098d90 | Ankur Sinha (Ankur Sinha Gmail) | 04 March 2024, 16:38:49 UTC | chore(nml): regenerate | 04 March 2024, 16:38:49 UTC |
| fd2a445 | Ankur Sinha (Ankur Sinha Gmail) | 04 March 2024, 16:34:37 UTC | chore: tweak some type hints | 04 March 2024, 16:34:37 UTC |
| 8a4cca1 | Ankur Sinha (Ankur Sinha Gmail) | 04 March 2024, 16:20:19 UTC | feat(cell): extend method to match all strings also | 04 March 2024, 16:20:19 UTC |
| 87bc4a9 | Ankur Sinha (Ankur Sinha Gmail) | 04 March 2024, 16:16:37 UTC | feat(cell): extend method to filter on unbranched/branched SegmentGroups | 04 March 2024, 16:16:37 UTC |
| 0f8ef51 | Ankur Sinha (Ankur Sinha Gmail) | 20 February 2024, 16:11:14 UTC | ci: update actions to latest versions | 20 February 2024, 16:11:14 UTC |
| ee93b33 | Ankur Sinha (Ankur Sinha Gmail) | 20 December 2023, 14:59:16 UTC | docs(nml): improve cell helper method docstrings | 20 December 2023, 14:59:16 UTC |
| 71c6924 | Padraig Gleeson | 13 December 2023, 11:32:53 UTC | Merge pull request #186 from NeuralEnsemble/feat/py312 Feat/py312 | 13 December 2023, 11:32:53 UTC |
| b4c3e4d | Padraig Gleeson | 13 December 2023, 11:32:35 UTC | Merge pull request #183 from NeuralEnsemble/fix/182 fix(loader): test for absolute paths in includes | 13 December 2023, 11:32:35 UTC |
| 23f009b | Ankur Sinha (Ankur Sinha Gmail) | 12 December 2023, 15:42:29 UTC | ci: drop py37, add py312 | 12 December 2023, 15:42:29 UTC |
| 51813d9 | Ankur Sinha (Ankur Sinha Gmail) | 12 December 2023, 15:42:15 UTC | feat: drop py37, add py312 | 12 December 2023, 15:42:15 UTC |
| d22ea2f | Ankur Sinha (Ankur Sinha Gmail) | 05 December 2023, 12:38:41 UTC | feat: to 0.5.8 | 05 December 2023, 12:38:41 UTC |
| 14973f0 | Ankur Sinha | 05 December 2023, 12:32:13 UTC | Merge pull request #185 from NeuralEnsemble/feat/more-docs More documentation for writers/loaders | 05 December 2023, 12:32:13 UTC |
| 4861b60 | Ankur Sinha (Ankur Sinha Gmail) | 05 December 2023, 12:28:21 UTC | fix(writers): ensure variable is assigned before usage | 05 December 2023, 12:28:21 UTC |
| 4fa0de7 | Ankur Sinha (Ankur Sinha Gmail) | 05 December 2023, 12:25:01 UTC | fix(writers): correct import | 05 December 2023, 12:25:01 UTC |
| a201a2b | Ankur Sinha (Ankur Sinha Gmail) | 05 December 2023, 12:12:27 UTC | chore(writers): format imports | 05 December 2023, 12:12:27 UTC |
| 8dff6c3 | Ankur Sinha (Ankur Sinha Gmail) | 05 December 2023, 12:11:56 UTC | docs(loaders): document module | 05 December 2023, 12:11:56 UTC |
| 9c3f9df | Ankur Sinha (Ankur Sinha Gmail) | 05 December 2023, 12:10:59 UTC | docs(writers): more documentation | 05 December 2023, 12:10:59 UTC |
| 2d81121 | Ankur Sinha (Ankur Sinha Gmail) | 05 December 2023, 10:59:51 UTC | docs(readme): update changelog [skip ci] | 05 December 2023, 10:59:51 UTC |
| ded3e28 | Ankur Sinha (Ankur Sinha Gmail) | 05 December 2023, 10:54:12 UTC | to 0.5.7 | 05 December 2023, 10:54:12 UTC |
| a7e13f8 | Ankur Sinha | 05 December 2023, 10:50:34 UTC | Merge pull request #184 from NeuralEnsemble/feat/document-writers docs(writers): document classes and methods | 05 December 2023, 10:50:34 UTC |
| 74c442f | Ankur Sinha (Ankur Sinha Gmail) | 05 December 2023, 10:46:11 UTC | chore(nml): add docstrings to hdf5 exporters | 05 December 2023, 10:46:11 UTC |
| 412a340 | Ankur Sinha (Ankur Sinha Gmail) | 05 December 2023, 10:38:21 UTC | docs(writers): document classes and methods And other cosmetic cleanups. | 05 December 2023, 10:38:21 UTC |
| c5ab31a | Ankur Sinha (Ankur Sinha Gmail) | 17 October 2023, 15:06:15 UTC | Merge branch 'development' into fix/182 | 17 October 2023, 15:06:15 UTC |
| 5b66349 | Ankur Sinha (Ankur Sinha Gmail) | 17 October 2023, 15:02:39 UTC | ci(regenerate): try `apt-get update` to fix CI | 17 October 2023, 15:02:39 UTC |
| 4839474 | Ankur Sinha (Ankur Sinha Gmail) | 17 October 2023, 14:47:10 UTC | fix(loader): test for absolute paths in includes We first check to see if the included path is fine to load, if it is, that's good. If it isn't, we assume it may be relative to the current path (base path) and try that. Fixes #182 | 17 October 2023, 14:48:40 UTC |
| ddd1ffb | Ankur Sinha (Ankur Sinha Gmail) | 04 October 2023, 15:06:19 UTC | chore: optimised -> optimized | 04 October 2023, 15:06:19 UTC |
| 650b97d | Padraig Gleeson | 22 September 2023, 15:41:14 UTC | To v0.5.6 | 22 September 2023, 15:41:14 UTC |
| f3a0db6 | Padraig Gleeson | 20 September 2023, 19:35:22 UTC | Merge pull request #168 from NeuralEnsemble/development Changes for NML v2.3 release | 20 September 2023, 19:35:22 UTC |
| b10d8c9 | Padraig Gleeson | 20 September 2023, 19:22:40 UTC | Merge pull request #181 from NeuralEnsemble/experimental To v0.5.5; updated schema (with hindmarsh rose) and regenerated nml.py | 20 September 2023, 19:22:40 UTC |
| 6e17de5 | pgleeson | 20 September 2023, 19:16:07 UTC | To v0.5.5 | 20 September 2023, 19:16:07 UTC |
| 80d88a0 | pgleeson | 20 September 2023, 19:15:23 UTC | Regenerated nml.py | 20 September 2023, 19:15:23 UTC |
| dee6fdf | Padraig Gleeson | 20 September 2023, 19:06:16 UTC | Update to latest schema | 20 September 2023, 19:06:16 UTC |
| af44198 | Padraig Gleeson | 19 September 2023, 14:07:16 UTC | Merge pull request #180 from NeuralEnsemble/experimental To v0.5.4 | 19 September 2023, 14:07:16 UTC |
| eb37964 | pgleeson | 19 September 2023, 11:08:08 UTC | To v0.5.4 | 19 September 2023, 11:08:08 UTC |
| 55bf626 | Padraig Gleeson | 19 September 2023, 10:57:22 UTC | Merge pull request #179 from NeuralEnsemble/experimental Use natsort to properly sort segments/groups when optimising | 19 September 2023, 10:57:22 UTC |
| 7cb0adc | pgleeson | 11 September 2023, 11:37:05 UTC | Merge branch 'master' into experimental | 11 September 2023, 11:37:05 UTC |
| 6aa7813 | pgleeson | 11 September 2023, 11:35:41 UTC | Remove another 2.7 test | 11 September 2023, 11:35:41 UTC |
| 6979aee | pgleeson | 11 September 2023, 11:35:13 UTC | Merge branch 'master' into experimental | 11 September 2023, 11:35:13 UTC |
| 909c729 | pgleeson | 11 September 2023, 11:31:07 UTC | Merge branch 'development' into experimental | 11 September 2023, 11:31:07 UTC |
| b0a13f2 | pgleeson | 11 September 2023, 11:29:48 UTC | Disable 2.7 test on master | 11 September 2023, 11:29:48 UTC |
| ae16f2b | pgleeson | 11 September 2023, 11:28:37 UTC | Merge branch 'master' into development | 11 September 2023, 11:28:37 UTC |
| 8ae20c2 | Padraig Gleeson | 11 September 2023, 11:23:50 UTC | Update gha actions - to retest master branch | 11 September 2023, 11:23:50 UTC |
| 81d4d5c | Padraig Gleeson | 11 September 2023, 10:57:40 UTC | Merge pull request #178 from NeuralEnsemble/feat/path-util Towards semi-automated path generation | 11 September 2023, 10:57:40 UTC |
| 63dc4cf | Ankur Sinha (Ankur Sinha Gmail) | 08 September 2023, 15:04:41 UTC | test: test hier graph and path generation | 08 September 2023, 15:04:41 UTC |
| 6f1d5f9 | Ankur Sinha (Ankur Sinha Gmail) | 08 September 2023, 15:04:07 UTC | feat(get-path): return path and graph | 08 September 2023, 15:04:07 UTC |
| 4f5e2c1 | Ankur Sinha (Ankur Sinha Gmail) | 08 September 2023, 15:00:23 UTC | chore: Digraph -> DiGraph | 08 September 2023, 15:00:23 UTC |
| 324d5d4 | Ankur Sinha (Ankur Sinha Gmail) | 08 September 2023, 14:56:25 UTC | feat(utils): add utils to generate relative paths between components Given that we have a well defined structure, we should ideally be able to generate all paths automatically. The information is present, we just need to figure out how to use it. | 08 September 2023, 14:56:25 UTC |
| f8865d8 | Ankur Sinha (Ankur Sinha Gmail) | 08 September 2023, 14:51:40 UTC | feat(nml): add wrapper to generate hierarchy of full nml | 08 September 2023, 14:51:40 UTC |
| e72e8be | Ankur Sinha (Ankur Sinha Gmail) | 08 September 2023, 12:41:57 UTC | test: test hierarchy functions | 08 September 2023, 12:41:57 UTC |
