https://github.com/GPflow/GPflow

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b08f306 Tf wraps (#198) * Renaming tf_hacks to tf_wraps * Changing tf_hacks to tf_wraps in code. * adding a tf_hacks file that raises deprecationwarnings * release notes * bumpng version on docs * importing tf_hacks, tf_wraps 09 September 2016, 10:59 UTC
61b0659 Verbosity flags for optimisation and compilation now used (#202) * Verbosity flags for optimisation and compilation now used. * Jitter level now read from config. * Exclude testing print statements * Added missed jitter levels. * bugfix in gpmc.py 09 September 2016, 10:42 UTC
9fbdec8 Merge pull request #191 from GPflow/config Config 09 September 2016, 09:03 UTC
e1eb94e minor improvements to config parsing 09 September 2016, 08:14 UTC
5c110da parser tests 09 September 2016, 08:06 UTC
f436f52 adding tests for config 08 September 2016, 20:37 UTC
16a6a63 Merge branch 'config' of github.com:gpflow/GPflow into config 08 September 2016, 16:38 UTC
f501cbe config tests 08 September 2016, 16:38 UTC
d088d91 rejigging settings.py to be easier to test 08 September 2016, 16:21 UTC
8a1d6f0 Merge branch 'master' into config 08 September 2016, 16:11 UTC
bf0118d Correction to link. (#196) * Correction to link. * Correction to version. * Updating version in intro.rst 08 September 2016, 15:50 UTC
fa65f01 Merge branch 'master' into config 08 September 2016, 14:22 UTC
161846e Merge pull request #140 from GPflow/sphinx Making the documentation more official 08 September 2016, 14:07 UTC
273ea18 Manual merge of master into sphinx branch. 08 September 2016, 13:56 UTC
ddc5389 empty commit for codeship 01 September 2016, 11:07 UTC
bb33a65 typo 01 September 2016, 10:57 UTC
f2be449 a first attempt at settings 01 September 2016, 10:54 UTC
e974f46 Merge pull request #183 from GPflow/scoping Scoping 30 August 2016, 10:40 UTC
537c8cc Merge branch 'scoping' of github.com:gpflow/GPflow into scoping 30 August 2016, 09:59 UTC
4042e03 adding some simple tests for scopes 30 August 2016, 09:59 UTC
e297601 Merge branch 'master' into scoping 30 August 2016, 09:02 UTC
3b5ee9b Merge pull request #184 from GPflow/imports removing potential for circular import 30 August 2016, 09:02 UTC
456c710 slight refinement of automated scopes 30 August 2016, 08:27 UTC
98dc8e7 empty commit to try to trigger codecov 30 August 2016, 08:07 UTC
ed14fd8 removing potential for circular import 29 August 2016, 20:11 UTC
54540ce some debugging 29 August 2016, 18:02 UTC
fdcaf94 adding a decorator for scoping with 29 August 2016, 17:29 UTC
dc746f3 adding simple scoping for KLs, conditionals 29 August 2016, 17:19 UTC
c89eb72 Merge pull request #182 from GPflow/revert-ltriang Remove default use of the LowerTriangular transform, for speed reasons 25 August 2016, 15:45 UTC
8295cef Remove default use of the LowerTriangular transform, for speed reasons. 25 August 2016, 15:23 UTC
23b47f5 Merge pull request #179 from GPflow/badge switching coverage badge to codecov 24 August 2016, 12:06 UTC
f5bc26e Merge branch 'master' into badge 24 August 2016, 11:54 UTC
ee40ad5 switching coverage badge to codecov 24 August 2016, 11:52 UTC
0f8e58c LowerTriangularTransform now also takes matrix, not just array of matrices (#176) * LowerTriangularTransform now also takes matrix, not just array of matrices. * Added docstring. 22 August 2016, 18:51 UTC
ae39349 Fixed compile bug when using gcc5. (#175) * Fixed compile bug when using gcc5. 22 August 2016, 14:58 UTC
67cfd5d Merge pull request #168 from GPflow/hmc_options adding optional Lmin to hmc procedure 19 August 2016, 11:52 UTC
689fe4b updated tests to pass Lmin argument 19 August 2016, 11:11 UTC
934e5d9 Merge branch 'master' into hmc_options 18 August 2016, 17:23 UTC
c2cda9e adding optional Lmin to hmc procedure 18 August 2016, 16:03 UTC
62472ea Merge pull request #167 from GPflow/hmc_options adding extra args to model.sample to pass through to hmc 18 August 2016, 15:08 UTC
cbc60d4 adding extra args to model.sample to pass through to hmc 18 August 2016, 14:45 UTC
40b13f5 Merge branch 'mathDR-pretty_plot' into sphinx 16 August 2016, 07:36 UTC
7058fb0 ipynb merge 16 August 2016, 07:35 UTC
bfacae6 added fill_between plotting and maxiter 15 August 2016, 23:19 UTC
28b19a6 silly git, those are duplicated entries. re-merging setup.py 15 August 2016, 17:13 UTC
2635f31 Merge branch 'sphinx' of github.com:gpflow/GPflow into sphinx 15 August 2016, 16:44 UTC
3510670 simple merge in setup.py 15 August 2016, 16:43 UTC
63bb484 Fixed custom op test failing (#165) * Fixed custom op test failing. * Incrementing version number and adding description of new version. * Changes to make setup.py work correctly with tfops 15 August 2016, 16:43 UTC
5814d8d Merge branch 'master' into sphinx 15 August 2016, 16:03 UTC
1076e47 Fixes #161 (#164) * Fixes #161 * pep8ified test_likelihoods 15 August 2016, 11:10 UTC
d9707b8 adding docs badge 15 August 2016, 09:37 UTC
0cb1ebb minor edits in milticlass notebook 13 August 2016, 15:30 UTC
dd454d4 added DM's suggestions of vgp notes 12 August 2016, 21:05 UTC
4874915 minor edits in vgp notebook 12 August 2016, 16:56 UTC
ae9e306 fixing some signs in VGP_notes 12 August 2016, 16:40 UTC
55cd0f4 slight updates to VGP notes 12 August 2016, 07:28 UTC
b413037 minor edits 11 August 2016, 16:01 UTC
f8a900e some tidying in rst files 11 August 2016, 15:59 UTC
5dd6fc3 adding notes for VGP implementation 11 August 2016, 15:43 UTC
7baf773 autodoccing priors, likelihoods, etc 11 August 2016, 13:46 UTC
97626fb more docstring improvements 11 August 2016, 13:06 UTC
f45232e significant improvements to autodoccing 11 August 2016, 12:54 UTC
b498690 autodoc works better with autosummary 11 August 2016, 10:32 UTC
6f36c1a tf0.8 as minimum 10 August 2016, 19:26 UTC
1ad6ed4 spend a long time fiddling with an equation 10 August 2016, 19:05 UTC
414cd19 fiddling with setup.py 10 August 2016, 17:46 UTC
4c8c939 chanegd manifest 10 August 2016, 17:33 UTC
26f7f24 first attempt at a manifest file 10 August 2016, 17:26 UTC
847802d forcing absolute imports 10 August 2016, 17:19 UTC
e488d6f fixing import error 10 August 2016, 17:08 UTC
fafac6a adding pandas to docs-require 10 August 2016, 17:03 UTC
88fdb65 adding scipt to docs_require 10 August 2016, 17:01 UTC
ed2b401 using python 3.4 on readthedocs 10 August 2016, 16:36 UTC
915388a adding tensorflow to docs_require 10 August 2016, 16:27 UTC
b4188fe built an intro page based on the readme 10 August 2016, 16:18 UTC
dc6c830 adding docs_require.txt 10 August 2016, 13:55 UTC
f8b24a1 Merge branch 'master' into sphinx 10 August 2016, 13:37 UTC
c50f9c9 improved headings 10 August 2016, 13:37 UTC
f5e5303 Merge branch 'master' into sphinx 10 August 2016, 13:33 UTC
b3dab02 use batch ops in KLs and conditionals (#159) * adding a simple Uniform prior * fixed sign bug * removed python loops from KL code * removed python loop from conditionals * removing loops from conditionals.py * removed loops form vgp * removing dead code 10 August 2016, 13:07 UTC
3cc5604 adding coregion kernel (#139) * adding coregion kernel * tests for Coregino kernel * slight iprovements to Coregion docstring 10 August 2016, 09:59 UTC
57a6c69 adding a simple Uniform prior (#146) * adding a simple Uniform prior * fixed sign bug 10 August 2016, 09:38 UTC
5726dd4 Fix covariance overparameterisation (#150) GPflow often optimizes positive-definite matrices. To maintain positive-definiteness without constrained optimization, a lower-triangular matrix is optimized. Sigma + L L ^T The previous approach to optimizing L was to ignore the upper half. The mean that there were some extra variables in the optimization vector, which did nothing. This PR implements a tensorflow op which transforms back-and-forth between triangular matrix L and a 'packed' vector representation. The result is that there are no redundant parameters in the optimization vector. 09 August 2016, 18:39 UTC
9c2faf6 add Apache headers (fix #135) (#157) 09 August 2016, 09:41 UTC
87dad9f Fixed optimiser options to be consistent with scipy (#153) * Fixed optimiser options to be consistent with scipy. * Bumped version & added deprecation warnings. 09 August 2016, 09:21 UTC
3f6f063 Get tests working with Python 3. (#152) - Added relative imports (.reference) - Changed all failIf/Unless to the non-deprecated assertTrue/False. 02 August 2016, 11:06 UTC
2d98580 Merge pull request #151 from GPflow/active_dims_pickle_bug make kernels with active_dims pickleable 01 August 2016, 16:53 UTC
a509447 adding some notes on structure (unfinished) 31 July 2016, 19:17 UTC
1da8382 Merge branch 'master' into active_dims_pickle_bug 29 July 2016, 19:38 UTC
bd0b423 make kernels with active_dims pickleable 29 July 2016, 19:27 UTC
18ec355 Merge branch 'master' into sphinx 29 July 2016, 14:55 UTC
e155d76 Track logprobs (#136) * added code for returning log-densities from HMC * added test code for log-prob tracking * adding access to logprobs from model class 29 July 2016, 09:25 UTC
6fa46bb enables pickling with fixed parameters (#141) 28 July 2016, 16:30 UTC
e0719ed some small edits to keep GPflow working with python 3 (#137) * python3.5 compat in test_likelihoods * py35 compatibility in autoflow 28 July 2016, 16:12 UTC
b4a8d1b made transforms all pickleable (#134) 27 July 2016, 14:40 UTC
47cdb8f latex related edits 27 July 2016, 11:34 UTC
ce59679 work on mcmc notebook 26 July 2016, 20:00 UTC
3438b29 minor kernels edits 26 July 2016, 16:49 UTC
9342d0c adding kernels intro notebook 26 July 2016, 16:39 UTC
e921bdd includgin classification notebook 26 July 2016, 11:10 UTC
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