121a94d | Mitzi Morris | 20 November 2020, 14:15:23 UTC | outline | 20 November 2020, 14:15:23 UTC |
5bd38e1 | Mitzi Morris | 20 November 2020, 14:12:22 UTC | outline | 20 November 2020, 14:12:22 UTC |
b9a858d | Charles Margossian | 10 November 2020, 15:19:18 UTC | Merge pull request #189 from stan-dev/case-study/planet planetary motion case study. | 10 November 2020, 15:19:18 UTC |
ed645a1 | Ben | 10 November 2020, 12:57:24 UTC | Edits | 10 November 2020, 12:57:24 UTC |
292c522 | Charles Margossian | 09 November 2020, 20:15:37 UTC | Add back table of content. | 09 November 2020, 20:15:37 UTC |
d73b22e | Charles Margossian | 09 November 2020, 19:55:12 UTC | remove duplicate references. | 09 November 2020, 19:55:12 UTC |
588063f | Charles Margossian | 09 November 2020, 19:16:13 UTC | Merge branch 'case-study/planet' of https://github.com/stan-dev/example-models into case-study/planet | 09 November 2020, 19:16:13 UTC |
b378044 | Ben | 09 November 2020, 17:42:17 UTC | A few edits | 09 November 2020, 17:42:17 UTC |
066f2d6 | Charles Margossian | 08 November 2020, 21:05:38 UTC | Add saved fits. | 08 November 2020, 21:05:38 UTC |
e10323f | Charles Margossian | 08 November 2020, 21:00:35 UTC | update case study to html. | 08 November 2020, 21:00:35 UTC |
ec2db44 | Charles Margossian | 05 November 2020, 18:04:13 UTC | update trace plots. | 05 November 2020, 18:04:13 UTC |
2098a5d | Charles Margossian | 03 November 2020, 22:10:20 UTC | Address BB comments and remove rstan dependency. | 03 November 2020, 22:10:20 UTC |
b187bc1 | Charles Margossian | 02 November 2020, 14:46:21 UTC | Add saved RDS | 02 November 2020, 14:46:21 UTC |
40770a0 | Charles Margossian | 02 November 2020, 14:06:54 UTC | clean up pdf output. | 02 November 2020, 14:06:54 UTC |
4d84738 | Charles Margossian | 29 October 2020, 21:47:48 UTC | polish markdown files. | 29 October 2020, 21:47:48 UTC |
fdbe189 | Charles Margossian | 29 October 2020, 18:00:11 UTC | planetary motion case study. | 29 October 2020, 18:00:11 UTC |
bf2c0d5 | Charles Margossian | 16 October 2020, 15:21:27 UTC | Merge pull request #187 from stan-dev/feature/hmm-example Added HMM example | 16 October 2020, 15:21:27 UTC |
1a550ac | Ben | 15 October 2020, 23:57:59 UTC | Added text to clarify difference in posterior draws and posterior predictions | 15 October 2020, 23:57:59 UTC |
61370bc | Ben | 02 October 2020, 22:32:57 UTC | Updates to clarify difference in `hmm_latent_rng` and `hmm_hidden_state_prob` and generating totally new trajectories of the HMM | 02 October 2020, 22:32:57 UTC |
cf40154 | Ben | 26 September 2020, 23:48:02 UTC | Responding to comments | 26 September 2020, 23:48:02 UTC |
8290cf5 | Ben | 22 September 2020, 03:15:06 UTC | Added link to stan model and author list | 22 September 2020, 03:15:06 UTC |
50a1431 | Ben | 18 September 2020, 22:19:51 UTC | Switched `hidden` for `latent` and other edits | 18 September 2020, 22:19:51 UTC |
742aa09 | Ben | 17 September 2020, 22:21:11 UTC | Changed verbage on rng a bit | 17 September 2020, 22:21:11 UTC |
8001224 | Ben | 17 September 2020, 22:15:06 UTC | Added HMM example | 17 September 2020, 22:15:06 UTC |
8a69641 | Ben Bales | 28 July 2020, 14:16:46 UTC | Merge pull request #186 from stan-dev/convert-odes Corrected contents of sir.old.data.R (design-doc #19) | 28 July 2020, 14:16:46 UTC |
8975d15 | Ben | 28 July 2020, 14:06:38 UTC | Corrected contents of sir.old.data.R (design-doc #19) | 28 July 2020, 14:06:38 UTC |
7d6ce71 | Ben Bales | 28 July 2020, 14:02:06 UTC | Merge pull request #185 from stan-dev/convert-odes Added model code and data to convert-odes case study (design-doc #19) | 28 July 2020, 14:02:06 UTC |
f9ea896 | Ben | 27 July 2020, 20:06:05 UTC | Added model code and data to convert-odes case study (design-doc #19) | 27 July 2020, 20:06:05 UTC |
14d8219 | Rok Češnovar | 27 July 2020, 06:32:43 UTC | Merge pull request #184 from stan-dev/convert-odes Updated links to model code/data for convert ODEs case study | 27 July 2020, 06:32:43 UTC |
3588380 | Ben | 27 July 2020, 00:22:00 UTC | Removed right hand side reference (design-doc #19) | 27 July 2020, 00:22:00 UTC |
95d45cb | Ben | 27 July 2020, 00:00:27 UTC | Updated links to model code/data (design-doc #19) | 27 July 2020, 00:00:27 UTC |
327a3da | Rok Češnovar | 21 July 2020, 12:20:18 UTC | Merge pull request #183 from stan-dev/convert-odes Case study for converting old ODE code to new ODE code (design-doc #19) | 21 July 2020, 12:20:18 UTC |
724dc77 | Ben | 19 July 2020, 23:05:11 UTC | Added links to 2_24 manual (design-docs #19) | 19 July 2020, 23:05:11 UTC |
5d0a87f | Ben | 19 July 2020, 21:15:58 UTC | Add stan formatting + revert model change (design-doc #19) | 19 July 2020, 21:15:58 UTC |
6f1ff30 | Ben | 19 July 2020, 21:13:17 UTC | Updated links, review edits, updated Stan code (design-doc #19) | 19 July 2020, 21:13:17 UTC |
a4ed542 | Ben | 13 July 2020, 22:14:56 UTC | Added more detailed function interface text from the design document (design-doc #19) | 13 July 2020, 22:14:56 UTC |
c99a0e3 | Ben | 12 July 2020, 22:55:30 UTC | Added attempt at case study for converting old ODE code to new ODE code (design-doc #19) | 12 July 2020, 22:55:30 UTC |
74dbca4 | Jonah Gabry | 22 June 2020, 21:53:49 UTC | Create FUNDING.yml | 22 June 2020, 21:53:49 UTC |
fba44d7 | Mitzi Morris | 17 June 2020, 17:39:27 UTC | update syntax funnel_reparm.stan | 17 June 2020, 17:39:27 UTC |
c5a6910 | Mitzi Morris | 17 June 2020, 13:08:40 UTC | Merge branch 'master' of https://github.com/stan-dev/example-models | 17 June 2020, 13:08:40 UTC |
4d29197 | Jonah Gabry | 16 June 2020, 21:35:54 UTC | Merge pull request #182 from stan-dev/reduce_sum_update2 Updated reduce_sum tutorial for latest cmdstanr changes | 16 June 2020, 21:35:54 UTC |
4aab2cb | Ben | 16 June 2020, 18:58:35 UTC | Updated reduce_sum tutorial for latest cmdstanr changes (https://github.com/stan-dev/cmdstanr/pull/185) | 16 June 2020, 18:58:35 UTC |
506a9ab | Jonah Gabry | 10 June 2020, 22:32:52 UTC | Merge pull request #171 from PhilClemson/master Fixed models / data files for cmdstan | 10 June 2020, 22:32:52 UTC |
9e196b3 | PhilClemson | 09 June 2020, 18:20:33 UTC | Removed shared peptide model for now | 09 June 2020, 18:20:33 UTC |
123e574 | Mitzi Morris | 27 May 2020, 17:03:02 UTC | Merge branch 'master' of https://github.com/stan-dev/example-models | 27 May 2020, 17:03:02 UTC |
335c051 | Mitzi Morris | 27 May 2020, 17:02:31 UTC | cleanup | 27 May 2020, 17:02:31 UTC |
f4848d3 | Robert E. Moore | 22 May 2020, 14:04:17 UTC | Add Imperial's COVID-19 model | 22 May 2020, 14:04:17 UTC |
b01fc3b | PhilClemson | 22 May 2020, 11:15:58 UTC | Included new folder 'applications' and added the shared peptide model | 22 May 2020, 11:15:58 UTC |
5ed206f | Bob Carpenter | 18 May 2020, 19:17:12 UTC | Merge pull request #180 from LeoGrin/update-sir-case-study add a table of content | 18 May 2020, 19:17:12 UTC |
dee269a | LeoGrin | 18 May 2020, 17:14:36 UTC | add TOC | 18 May 2020, 17:14:36 UTC |
5ba27c7 | Bob Carpenter | 16 May 2020, 18:53:20 UTC | Merge pull request #179 from LeoGrin/update-sir-case-study update the disease transmission case study | 16 May 2020, 18:53:20 UTC |
a5a6c0b | LeoGrin | 16 May 2020, 13:55:37 UTC | update the disease transmission case study | 16 May 2020, 13:55:37 UTC |
e6e8fbd | Jonah Gabry | 13 May 2020, 17:33:38 UTC | Merge pull request #178 from stan-dev/reduce_sum_updated Changed num_cores/num_chains to cores/chains | 13 May 2020, 17:33:38 UTC |
5f8ad5f | Ben | 13 May 2020, 17:21:05 UTC | Changed num_cores/num_chains to cores/chains | 13 May 2020, 17:21:05 UTC |
f6fedbf | Jonah Gabry | 12 May 2020, 21:00:58 UTC | Merge pull request #176 from stan-dev/reduce_sum_updated Updated reduce_sum tutorial for cmdstanr threading interface chanes (Issue #175) | 12 May 2020, 21:00:58 UTC |
d76d85a | Mitzi Morris | 11 May 2020, 23:50:04 UTC | Merge pull request #177 from stan-dev/case-study/lotka-volterra-edits Case study/lotka volterra edits | 11 May 2020, 23:50:04 UTC |
f7761ed | Mitzi Morris | 11 May 2020, 23:42:03 UTC | remedy omissions | 11 May 2020, 23:42:03 UTC |
e8a8b6b | Ben | 11 May 2020, 21:12:53 UTC | Updated reduce_sum tutorial for cmdstanr threading interface chanes (Issue #175) | 11 May 2020, 21:12:53 UTC |
7abb24d | Mitzi Morris | 11 May 2020, 20:59:00 UTC | fix lognormal formulas | 11 May 2020, 20:59:00 UTC |
6c7d63a | Mitzi Morris | 10 May 2020, 16:21:21 UTC | fix typo, add link to manual | 10 May 2020, 16:21:21 UTC |
96fa4c5 | Mitzi Morris | 09 May 2020, 15:39:05 UTC | Merge branch 'master' of https://github.com/stan-dev/example-models | 09 May 2020, 15:39:05 UTC |
1f9e74c | Bob Carpenter | 08 May 2020, 20:58:30 UTC | Merge pull request #174 from stan-dev/case-study/liza-sir-model corrections | 08 May 2020, 20:58:30 UTC |
6b9449e | Semenova, Elizaveta | 07 May 2020, 20:34:16 UTC | added ‘biblio.bib’; corrected data in Stan models; alternated SIR formulation for better readability; added comment on the efficiency in case of constant total population | 07 May 2020, 20:34:16 UTC |
bf401cf | Mitzi Morris | 06 May 2020, 23:23:36 UTC | Merge branch 'master' of https://github.com/stan-dev/example-models | 06 May 2020, 23:23:36 UTC |
f0341fe | Mitzi Morris | 06 May 2020, 19:30:14 UTC | Merge pull request #173 from stan-dev/case-study/SIR Add case study on transmission models. | 06 May 2020, 19:30:14 UTC |
18b4d44 | Charles Margossian | 06 May 2020, 13:50:50 UTC | Add case study on transmission models. | 06 May 2020, 13:50:50 UTC |
b6ac05a | Mitzi Morris | 04 May 2020, 22:41:02 UTC | Merge branch 'master' of https://github.com/stan-dev/example-models | 04 May 2020, 22:41:02 UTC |
dc53fe5 | Mitzi Morris | 04 May 2020, 22:38:37 UTC | Created using Colaboratory | 04 May 2020, 22:38:37 UTC |
6a5bf4e | Mitzi Morris | 04 May 2020, 22:27:45 UTC | cloud case study update | 04 May 2020, 22:27:45 UTC |
6bb884e | Mitzi Morris | 04 May 2020, 22:25:01 UTC | updated case study | 04 May 2020, 22:25:01 UTC |
390ad7b | Mitzi Morris | 04 May 2020, 19:21:00 UTC | co-ordinate notebooks, writeup | 04 May 2020, 19:21:00 UTC |
b6f36be | Mitzi Morris | 04 May 2020, 19:11:25 UTC | Merge branch 'master' of https://github.com/stan-dev/example-models | 04 May 2020, 19:11:25 UTC |
46f227c | Mitzi Morris | 04 May 2020, 16:26:35 UTC | Created using Colaboratory | 04 May 2020, 16:26:35 UTC |
ea657a0 | Mitzi Morris | 04 May 2020, 05:14:32 UTC | Created using Colaboratory | 04 May 2020, 05:14:32 UTC |
ba7a06a | Mitzi Morris | 04 May 2020, 05:05:47 UTC | Created using Colaboratory | 04 May 2020, 05:05:47 UTC |
e4a9320 | Mitzi Morris | 04 May 2020, 04:52:19 UTC | cleanup | 04 May 2020, 04:52:19 UTC |
0fcf587 | Mitzi Morris | 04 May 2020, 04:51:39 UTC | Merge branch 'master' of https://github.com/stan-dev/example-models | 04 May 2020, 04:51:39 UTC |
91353d1 | Mitzi Morris | 04 May 2020, 04:51:18 UTC | Created using Colaboratory | 04 May 2020, 04:51:18 UTC |
37a6599 | Mitzi Morris | 04 May 2020, 04:48:03 UTC | Merge branch 'master' of https://github.com/stan-dev/example-models | 04 May 2020, 04:48:03 UTC |
856873c | Mitzi Morris | 04 May 2020, 04:47:12 UTC | Created using Colaboratory | 04 May 2020, 04:47:12 UTC |
8988bcf | Mitzi Morris | 04 May 2020, 01:12:26 UTC | Created using Colaboratory | 04 May 2020, 01:12:26 UTC |
da5f430 | Mitzi Morris | 04 May 2020, 01:06:15 UTC | Created using Colaboratory | 04 May 2020, 01:06:15 UTC |
9b1a15d | Mitzi Morris | 04 May 2020, 01:01:24 UTC | Created using Colaboratory | 04 May 2020, 01:01:24 UTC |
d2d26aa | Mitzi Morris | 04 May 2020, 01:00:23 UTC | Created using Colaboratory | 04 May 2020, 01:00:23 UTC |
3a0684e | Mitzi Morris | 04 May 2020, 00:40:12 UTC | Created using Colaboratory | 04 May 2020, 00:40:12 UTC |
8487a15 | Mitzi Morris | 04 May 2020, 00:33:46 UTC | Created using Colaboratory | 04 May 2020, 00:33:46 UTC |
768e3c2 | Mitzi Morris | 04 May 2020, 00:28:29 UTC | Created using Colaboratory | 04 May 2020, 00:28:29 UTC |
d7bd315 | Mitzi Morris | 04 May 2020, 00:27:53 UTC | Created using Colaboratory | 04 May 2020, 00:27:53 UTC |
9a09783 | Mitzi Morris | 04 May 2020, 00:26:55 UTC | Merge pull request #172 from stan-dev/feature/jupyter-notebooks Feature/jupyter notebooks | 04 May 2020, 00:26:55 UTC |
7ea8867 | Mitzi Morris | 04 May 2020, 00:18:15 UTC | merge fix | 04 May 2020, 00:18:15 UTC |
e2adabe | Mitzi Morris | 04 May 2020, 00:15:30 UTC | adding CmdStanR notebook | 04 May 2020, 00:15:30 UTC |
ca844b4 | Mitzi Morris | 04 May 2020, 00:03:34 UTC | Created using Colaboratory | 04 May 2020, 00:03:34 UTC |
c26e0c2 | Mitzi Morris | 03 May 2020, 22:27:32 UTC | Merge branch 'feature/jupyter-notebooks' of https://github.com/stan-dev/example-models into feature/jupyter-notebooks | 03 May 2020, 22:27:32 UTC |
db69a6b | Mitzi Morris | 03 May 2020, 22:18:27 UTC | Created using Colaboratory | 03 May 2020, 22:18:27 UTC |
23fc8fc | Mitzi Morris | 03 May 2020, 22:14:50 UTC | Created using Colaboratory | 03 May 2020, 22:14:50 UTC |
a205eac | Mitzi Morris | 03 May 2020, 22:12:46 UTC | Created using Colaboratory | 03 May 2020, 22:12:46 UTC |
5613c10 | Mitzi Morris | 03 May 2020, 22:05:59 UTC | improve name | 03 May 2020, 22:05:59 UTC |
10c9d24 | Mitzi Morris | 03 May 2020, 20:02:06 UTC | adding models and data | 03 May 2020, 20:02:06 UTC |
bca0be9 | Mitzi Morris | 03 May 2020, 17:33:07 UTC | Merge branch 'master' of https://github.com/stan-dev/example-models | 03 May 2020, 17:33:07 UTC |
3a7da6c | Mitzi Morris | 03 May 2020, 17:31:54 UTC | Created using Colaboratory | 03 May 2020, 17:31:54 UTC |