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01 July 2025, 23:59:04 UTC
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RevisionAuthorDateMessageCommit Date
f21ecba Josh Siegle27 August 2019, 23:28:41 UTCChange to version 0.227 August 2019, 23:28:41 UTC
79c2598 Josh Siegle26 August 2019, 01:49:30 UTCAdd comma26 August 2019, 01:49:30 UTC
bd62fb5 Josh Siegle26 August 2019, 01:49:04 UTCMove parameters to schema file26 August 2019, 01:49:04 UTC
06b8ea1 Josh Siegle25 August 2019, 23:46:37 UTCAdd template shape check25 August 2019, 23:46:37 UTC
36ea9e8 Josh Siegle25 August 2019, 00:48:57 UTCSet up framework for noise template classifier25 August 2019, 00:48:57 UTC
643e8e5 Josh Siegle21 August 2019, 00:41:57 UTCChange color of asymmetric units21 August 2019, 00:41:57 UTC
97f3177 Josh Siegle21 August 2019, 00:29:22 UTCSave after every update21 August 2019, 00:29:22 UTC
758155a Josh Siegle09 August 2019, 21:36:24 UTCCopy pc_features before changing its size09 August 2019, 21:36:24 UTC
32ff79c Josh Siegle29 July 2019, 22:30:35 UTCupdate categories on template classifier app29 July 2019, 22:30:35 UTC
3855129 Josh Siegle25 July 2019, 19:29:55 UTCUpdate batch plotting25 July 2019, 19:29:55 UTC
a61c708 Josh Siegle11 July 2019, 23:36:26 UTCChange name of metrics output file11 July 2019, 23:36:26 UTC
1787713 Josh Siegle11 July 2019, 23:35:53 UTCMerge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting11 July 2019, 23:35:53 UTC
fbd955e Josh Siegle11 July 2019, 23:35:41 UTCUpdate create_input_json11 July 2019, 23:35:41 UTC
6cd72ff Josh Siegle11 July 2019, 23:34:48 UTCFix PC indexing bug11 July 2019, 23:34:48 UTC
3406ae4 Josh Siegle02 July 2019, 19:06:09 UTCChange spikes per epoch to 1000 for mean waveforms02 July 2019, 19:06:09 UTC
bfee7bc Josh Siegle02 July 2019, 17:51:40 UTCMerge branch 'master' of https://github.com/AllenInstitute/ecephys_spike_sorting02 July 2019, 17:51:40 UTC
f545acf Josh Siegle02 July 2019, 17:51:38 UTCAdd batch processing script02 July 2019, 17:51:38 UTC
8d5dcaa Josh Siegle02 July 2019, 16:12:18 UTCUpdate batch plotting script02 July 2019, 16:12:18 UTC
da8eefc Josh Siegle01 July 2019, 22:08:14 UTCMerge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting01 July 2019, 22:08:14 UTC
b5ed6bb Josh Siegle01 July 2019, 22:07:41 UTCUpdate hotkeys for template classifier app01 July 2019, 22:07:41 UTC
e2bf7d0 Josh Siegle28 June 2019, 23:47:55 UTCMerge branch 'master' of https://github.com/AllenInstitute/ecephys_spike_sorting28 June 2019, 23:47:55 UTC
8629d0f Josh Siegle28 June 2019, 23:47:52 UTCAdd batch plotting script28 June 2019, 23:47:52 UTC
9642b82 Josh Siegle28 June 2019, 23:46:45 UTCMerge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting28 June 2019, 23:46:45 UTC
726cc15 Josh Siegle28 June 2019, 23:46:17 UTCChanges on NP.128 June 2019, 23:46:17 UTC
41db3c3 Josh Siegle28 June 2019, 23:42:13 UTCMerge branch 'master' of https://github.com/AllenInstitute/ecephys_spike_sorting28 June 2019, 23:42:13 UTC
a5736b1 Josh Siegle28 June 2019, 23:41:58 UTCUpdates on NP.128 June 2019, 23:41:58 UTC
0ca52b1 Josh Siegle28 June 2019, 23:28:17 UTCUpdate README for quality metrics28 June 2019, 23:28:17 UTC
741e02f Josh Siegle28 June 2019, 23:22:18 UTCUpdate metrics.py28 June 2019, 23:22:18 UTC
fb6b330 Josh Siegle28 June 2019, 21:05:17 UTCMerge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting28 June 2019, 21:05:17 UTC
01ec307 Josh Siegle28 June 2019, 21:05:09 UTCFix typo28 June 2019, 21:05:09 UTC
0fac476 Josh Siegle28 June 2019, 21:00:13 UTCUpdate depth estimation params28 June 2019, 21:00:13 UTC
95fad93 Josh Siegle28 June 2019, 20:56:17 UTCAdd new batch processing script28 June 2019, 20:56:17 UTC
2c6b175 Josh Siegle28 June 2019, 20:42:32 UTCMerge branch 'master' of https://github.com/AllenInstitute/ecephys_spike_sorting28 June 2019, 20:42:32 UTC
db43dfc Josh Siegle28 June 2019, 20:42:29 UTCUpdate create_input_json28 June 2019, 20:42:29 UTC
9061bef Josh Siegle28 June 2019, 20:13:04 UTCAdd initial implementation of drift metrics; closes #3628 June 2019, 20:13:04 UTC
6ce07eb Josh Siegle28 June 2019, 00:20:05 UTCMerge waveform metrics into quality metrics file, if available28 June 2019, 00:20:05 UTC
f2b378a Josh Siegle27 June 2019, 23:00:18 UTCdepth_estimation module runs again27 June 2019, 23:00:18 UTC
e51eb30 Josh Siegle27 June 2019, 22:27:30 UTCFix merge conflict27 June 2019, 22:27:30 UTC
6d9c9de Josh Siegle27 June 2019, 22:26:26 UTCRefactor depth estimation module (untested)27 June 2019, 22:26:26 UTC
f8acb0d Josh Siegle27 June 2019, 20:12:04 UTCAdd check for LFP channel reordering in depth_estimation module27 June 2019, 20:12:04 UTC
b152554 Josh Siegle27 June 2019, 19:37:39 UTCAdd code for full probe t-sne plots27 June 2019, 19:37:39 UTC
0d0b9e5 Josh Siegle27 June 2019, 17:47:29 UTCMake sure plots get closed after saving27 June 2019, 17:47:29 UTC
67a83c6 Josh Siegle27 June 2019, 16:52:40 UTCAdd batch processing file for remote data loading27 June 2019, 16:52:40 UTC
5e0bdb8 Josh Siegle27 June 2019, 16:52:03 UTCUpdate kilosort_helper to work with remote files Now the original data file doesn't have to be local (althoughtemp_wh.dat should be).27 June 2019, 16:52:03 UTC
e1b0eb9 Josh Siegle26 June 2019, 22:10:35 UTCMerge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting26 June 2019, 22:10:35 UTC
3fee8c2 Josh Siegle26 June 2019, 22:09:33 UTCAdd raw data visualization26 June 2019, 22:09:33 UTC
4d64938 Josh Siegle26 June 2019, 20:30:30 UTCAdd ks template plot26 June 2019, 20:30:30 UTC
ec7051e Josh Siegle26 June 2019, 19:04:21 UTCAdd driftmap code26 June 2019, 19:04:21 UTC
9bdc18d Josh Siegle25 June 2019, 22:21:21 UTCMerge pull request #38 from AllenInstitute/37/ks_postprocessing Add spike_templates to load_kilosort_data25 June 2019, 22:21:21 UTC
90eeb60 Josh Siegle25 June 2019, 22:15:31 UTCAdd spike_templates to load_kilosort_data and remove appended _r from kilosort_postprocessing output files25 June 2019, 22:15:31 UTC
080a951 Josh Siegle19 June 2019, 00:47:36 UTCFix typo in batch_processing.py19 June 2019, 00:47:36 UTC
5d96203 Josh Siegle19 June 2019, 00:33:46 UTCRemove local processing file19 June 2019, 00:33:46 UTC
3a03ce1 Josh Siegle19 June 2019, 00:32:45 UTCMerge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting19 June 2019, 00:32:45 UTC
2c4929a Josh Siegle19 June 2019, 00:31:52 UTCMerge branch '35/waveform_test'19 June 2019, 00:31:52 UTC
f48187b Josh Siegle12 June 2019, 21:42:28 UTCUse local peak instead of peak channel when extracting 1D waveform12 June 2019, 21:42:28 UTC
7520740 Josh Siegle12 June 2019, 21:22:10 UTCAdd minimum urllib3 and requests requirements to pipfile12 June 2019, 21:22:10 UTC
7605433 Josh Siegle12 June 2019, 17:05:45 UTCAdd 'max_chan' variable12 June 2019, 17:05:45 UTC
00266ea Josh Siegle12 June 2019, 16:53:30 UTCUpdate 2D waveform calculation12 June 2019, 16:53:30 UTC
3ebea39 Josh Siegle10 June 2019, 19:41:44 UTCAdd warning supression10 June 2019, 19:41:44 UTC
a1967d6 Josh Siegle06 June 2019, 19:40:11 UTCUpdate README.md06 June 2019, 19:40:11 UTC
5854bf1 Josh Siegle06 June 2019, 19:14:45 UTCMerge branch '35/waveform_test' of https://github.com/alleninstitute/ecephys_spike_sorting into 35/waveform_test06 June 2019, 19:14:45 UTC
d992e13 Josh Siegle06 June 2019, 19:14:23 UTCRestrict 2d waveform calculation only to available channels06 June 2019, 19:14:23 UTC
5f0052c Xiaoxuan Jia04 June 2019, 21:15:15 UTCcorrected bug created by detecting peak before trough in the waveform duration04 June 2019, 21:15:15 UTC
ab6f49d Xiaoxuan Jia04 June 2019, 20:54:39 UTCmatch upsampling_factor for comparison with results in the paper04 June 2019, 20:54:39 UTC
4853536 Josh Siegle04 June 2019, 20:16:33 UTCMerge branch 'master' into 35/waveform_test04 June 2019, 20:16:33 UTC
eda29ac Josh Siegle04 June 2019, 20:14:38 UTCFix timestamp calculation04 June 2019, 20:14:38 UTC
e157470 Xiaoxuan Jia04 June 2019, 17:32:05 UTC#35 initial04 June 2019, 17:32:05 UTC
45f4acb Josh Siegle03 June 2019, 23:18:37 UTCAdd note on non-Python dependencies03 June 2019, 23:18:37 UTC
6733e4e Josh Siegle03 June 2019, 22:58:06 UTCUpdate README03 June 2019, 22:58:06 UTC
548610b Josh Siegle03 June 2019, 22:57:15 UTCAdd macOS instructions to scripts README03 June 2019, 22:57:15 UTC
8ae924a Josh Siegle03 June 2019, 22:54:39 UTCAdd homebrew note to README03 June 2019, 22:54:39 UTC
c5d93a8 Josh Siegle03 June 2019, 22:52:04 UTCAdd Mac instructions for README03 June 2019, 22:52:04 UTC
157575d Josh Siegle03 June 2019, 22:48:48 UTCRemove 's' from key; closes #3203 June 2019, 22:48:48 UTC
3287b63 Josh Siegle03 June 2019, 17:20:27 UTCUpdate documentation03 June 2019, 17:20:27 UTC
89132de Josh Siegle02 June 2019, 00:02:03 UTCUpdate documentation02 June 2019, 00:02:03 UTC
6f7835c Josh Siegle01 June 2019, 22:33:40 UTCUpdate README files01 June 2019, 22:33:40 UTC
137bd96 Josh Siegle01 June 2019, 22:26:16 UTCAdd documentation for batch processing scripts01 June 2019, 22:26:16 UTC
6ec03bb Josh Siegle01 June 2019, 21:30:21 UTCUpdate documentation01 June 2019, 21:30:21 UTC
a9e1b0a Josh Siegle01 June 2019, 21:04:06 UTCMerge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting01 June 2019, 21:04:06 UTC
4ef1381 Josh Siegle01 June 2019, 21:03:58 UTCUpdate README01 June 2019, 21:03:58 UTC
1fdba99 Josh Siegle01 June 2019, 05:14:11 UTCUpdate README files01 June 2019, 05:14:11 UTC
03b07aa Josh Siegle01 June 2019, 01:45:26 UTCMerge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting01 June 2019, 01:45:26 UTC
798cf7f Josh Siegle01 June 2019, 01:40:56 UTCClean up kilosort_helper01 June 2019, 01:40:56 UTC
2a5a81e Josh Siegle01 June 2019, 01:20:41 UTCAdd copyright to README01 June 2019, 01:20:41 UTC
1cdd0eb Josh Siegle01 June 2019, 01:18:38 UTCUpdate batch processing script01 June 2019, 01:18:38 UTC
5fc383d Josh Siegle01 June 2019, 01:18:15 UTCMajor refactor: clean up input json01 June 2019, 01:18:15 UTC
d1991c1 Josh Siegle31 May 2019, 23:13:37 UTCMerge from origin/master31 May 2019, 23:13:37 UTC
5949c08 Josh Siegle31 May 2019, 23:04:51 UTCRemove entry points from README31 May 2019, 23:04:51 UTC
d2717ac Josh Siegle31 May 2019, 23:03:04 UTCChange size of probe_depth.png31 May 2019, 23:03:04 UTC
18ab0d4 Josh Siegle31 May 2019, 23:02:26 UTCChange size of probe_depth.png31 May 2019, 23:02:26 UTC
03e7dc9 Josh Siegle31 May 2019, 23:02:06 UTCChange size of probe_depth.png31 May 2019, 23:02:06 UTC
a99534c Josh Siegle31 May 2019, 23:01:43 UTCChange size of probe_depth.png31 May 2019, 23:01:43 UTC
a855dff Josh Siegle31 May 2019, 23:01:19 UTCChange size of probe_depth.png31 May 2019, 23:01:19 UTC
eff0186 Josh Siegle31 May 2019, 23:00:43 UTCChange size of probe_depth.png31 May 2019, 23:00:43 UTC
2143cb4 Josh Siegle31 May 2019, 22:59:42 UTCUpdate probe_depth image31 May 2019, 22:59:42 UTC
759e360 Josh Siegle31 May 2019, 22:18:16 UTCUpdate __main__ files31 May 2019, 22:18:16 UTC
92ab6bb Josh Siegle31 May 2019, 20:50:57 UTCUpdate README31 May 2019, 20:50:57 UTC
3f1ffde Josh Siegle31 May 2019, 20:48:16 UTCUpdate Update batch processing script31 May 2019, 20:48:16 UTC
fc786c4 Josh Siegle31 May 2019, 20:43:10 UTCAdd Windows documentation31 May 2019, 20:43:10 UTC
5ae4522 Josh Siegle31 May 2019, 19:56:38 UTCEdit waveform images31 May 2019, 19:56:38 UTC