| 2ebecea | Nick Croucher | 06 October 2021, 09:58:05 UTC | Remove build directory | 06 October 2021, 09:58:05 UTC |
| e24f667 | Nick Croucher | 06 October 2021, 09:56:35 UTC | Merge branch 'hpc_fix' of https://github.com/sanger-pathogens/gubbins into hpc_fix | 06 October 2021, 09:56:35 UTC |
| 0d7487d | Nick Croucher | 30 September 2021, 20:36:58 UTC | Fix JAR method | 30 September 2021, 20:36:58 UTC |
| 31e07a1 | Nick Croucher | 30 September 2021, 20:36:58 UTC | Fix JAR method | 30 September 2021, 20:36:58 UTC |
| 078d716 | Croucher | 27 July 2021, 20:37:35 UTC | Allow for safe sys.exit | 27 July 2021, 20:37:35 UTC |
| 86d2226 | Croucher | 27 July 2021, 20:37:35 UTC | Allow for safe sys.exit | 27 July 2021, 20:37:35 UTC |
| 0a7f3e2 | Croucher | 27 July 2021, 05:39:27 UTC | Specify threads for raxml-ng | 27 July 2021, 05:39:27 UTC |
| 32b1478 | Croucher | 27 July 2021, 05:39:27 UTC | Specify threads for raxml-ng | 27 July 2021, 05:39:27 UTC |
| 25184cf | Christoph Püthe | 29 January 2021, 16:16:24 UTC | add workflow name for github badge | 29 January 2021, 16:16:24 UTC |
| 7c08577 | Christoph Püthe | 29 January 2021, 16:16:24 UTC | add workflow name for github badge | 29 January 2021, 16:16:24 UTC |
| 2be742a | Christoph Püthe | 29 January 2021, 14:52:57 UTC | Merge pull request #294 from sanger-pathogens/dockerandci get CI and Docker build running | 29 January 2021, 14:52:57 UTC |
| 5200eb2 | Christoph Püthe | 29 January 2021, 14:52:57 UTC | Merge pull request #294 from sanger-pathogens/dockerandci get CI and Docker build running | 29 January 2021, 14:52:57 UTC |
| 008fee3 | puethe | 29 January 2021, 14:41:52 UTC | get CI and Docker build running | 29 January 2021, 14:41:52 UTC |
| 05f6b3c | puethe | 29 January 2021, 14:41:52 UTC | get CI and Docker build running | 29 January 2021, 14:41:52 UTC |
| 0497efd | nickjcroucher | 28 January 2021, 22:38:53 UTC | Merge pull request #293 from sanger-pathogens/fixdocker Update creation of Dockerfile | 28 January 2021, 22:38:53 UTC |
| aad6897 | nickjcroucher | 28 January 2021, 22:38:53 UTC | Merge pull request #293 from sanger-pathogens/fixdocker Update creation of Dockerfile | 28 January 2021, 22:38:53 UTC |
| 61302b2 | nickjcroucher | 28 January 2021, 19:51:34 UTC | Further edit to RAxML selection function | 28 January 2021, 19:51:34 UTC |
| ed3601f | nickjcroucher | 28 January 2021, 19:51:34 UTC | Further edit to RAxML selection function | 28 January 2021, 19:51:34 UTC |
| 4f06dbe | nickjcroucher | 28 January 2021, 19:41:37 UTC | Restore RAxML selection function | 28 January 2021, 19:41:37 UTC |
| e98092f | nickjcroucher | 28 January 2021, 19:41:37 UTC | Restore RAxML selection function | 28 January 2021, 19:41:37 UTC |
| 7f91063 | nickjcroucher | 28 January 2021, 19:28:30 UTC | Alter RAxML selection function | 28 January 2021, 19:28:30 UTC |
| afba6b5 | nickjcroucher | 28 January 2021, 19:28:30 UTC | Alter RAxML selection function | 28 January 2021, 19:28:30 UTC |
| be29846 | puethe | 28 January 2021, 18:12:45 UTC | working Dockerfile based on pytest | 28 January 2021, 18:12:45 UTC |
| f0d30f1 | puethe | 28 January 2021, 18:12:45 UTC | working Dockerfile based on pytest | 28 January 2021, 18:12:45 UTC |
| 172d435 | puethe | 28 January 2021, 17:31:13 UTC | workflow back to original | 28 January 2021, 17:31:13 UTC |
| 58c2009 | puethe | 28 January 2021, 17:31:13 UTC | workflow back to original | 28 January 2021, 17:31:13 UTC |
| 96755d9 | puethe | 28 January 2021, 17:21:03 UTC | add coverage back | 28 January 2021, 17:21:03 UTC |
| c27e1da | puethe | 28 January 2021, 17:21:03 UTC | add coverage back | 28 January 2021, 17:21:03 UTC |
| 462e37c | puethe | 28 January 2021, 17:06:50 UTC | pure pytest | 28 January 2021, 17:06:50 UTC |
| db46ba7 | puethe | 28 January 2021, 17:06:50 UTC | pure pytest | 28 January 2021, 17:06:50 UTC |
| 67b9712 | puethe | 28 January 2021, 15:50:52 UTC | improve choosing executable by processor | 28 January 2021, 15:50:52 UTC |
| d89a468 | puethe | 28 January 2021, 15:50:52 UTC | improve choosing executable by processor | 28 January 2021, 15:50:52 UTC |
| 86f0856 | puethe | 28 January 2021, 14:35:32 UTC | try with sudo | 28 January 2021, 14:35:32 UTC |
| e1fdc88 | puethe | 28 January 2021, 14:35:32 UTC | try with sudo | 28 January 2021, 14:35:32 UTC |
| 1cfccfb | puethe | 28 January 2021, 12:25:17 UTC | get Docker working | 28 January 2021, 12:25:17 UTC |
| 3556567 | puethe | 28 January 2021, 12:25:17 UTC | get Docker working | 28 January 2021, 12:25:17 UTC |
| 7f00179 | puethe | 27 January 2021, 17:51:51 UTC | update readme/changelog | 27 January 2021, 17:51:51 UTC |
| edbec91 | puethe | 27 January 2021, 17:51:51 UTC | update readme/changelog | 27 January 2021, 17:51:51 UTC |
| 21d70c8 | Christoph Püthe | 27 January 2021, 17:18:34 UTC | Merge pull request #291 from nickjcroucher/master Upgrade to version 3.0 | 27 January 2021, 17:18:34 UTC |
| dad074e | Christoph Püthe | 27 January 2021, 17:18:34 UTC | Merge pull request #291 from nickjcroucher/master Upgrade to version 3.0 | 27 January 2021, 17:18:34 UTC |
| 2974f5f | nickjcroucher | 27 January 2021, 10:30:49 UTC | Tidy up installation and version parsing | 27 January 2021, 10:30:49 UTC |
| e851a7d | nickjcroucher | 27 January 2021, 10:30:49 UTC | Tidy up installation and version parsing | 27 January 2021, 10:30:49 UTC |
| 1be6b5b | nickjcroucher | 27 January 2021, 10:15:13 UTC | Change install prefix | 27 January 2021, 10:15:13 UTC |
| b740ff2 | nickjcroucher | 27 January 2021, 10:15:13 UTC | Change install prefix | 27 January 2021, 10:15:13 UTC |
| 0dad725 | nickjcroucher | 27 January 2021, 09:58:16 UTC | Try sudo install | 27 January 2021, 09:58:16 UTC |
| 5c87c32 | nickjcroucher | 27 January 2021, 09:58:16 UTC | Try sudo install | 27 January 2021, 09:58:16 UTC |
| 09aad38 | nickjcroucher | 27 January 2021, 09:16:56 UTC | Add make install to testing | 27 January 2021, 09:16:56 UTC |
| cae86c5 | nickjcroucher | 27 January 2021, 09:16:56 UTC | Add make install to testing | 27 January 2021, 09:16:56 UTC |
| 4474151 | nickjcroucher | 27 January 2021, 08:24:38 UTC | Merge version information | 27 January 2021, 08:24:38 UTC |
| 658f284 | nickjcroucher | 27 January 2021, 08:24:38 UTC | Merge version information | 27 January 2021, 08:24:38 UTC |
| 9de5501 | nickjcroucher | 25 January 2021, 21:23:30 UTC | Edit threads argument description | 25 January 2021, 21:24:42 UTC |
| a9c9026 | nickjcroucher | 25 January 2021, 21:23:30 UTC | Edit threads argument description | 25 January 2021, 21:24:42 UTC |
| 321a41c | nickjcroucher | 25 January 2021, 21:18:07 UTC | Append to PATH before installation | 25 January 2021, 21:18:07 UTC |
| abed3bc | nickjcroucher | 25 January 2021, 21:18:07 UTC | Append to PATH before installation | 25 January 2021, 21:18:07 UTC |
| 206247e | nickjcroucher | 25 January 2021, 20:34:28 UTC | Add to path for package search | 25 January 2021, 20:34:28 UTC |
| 5577a74 | nickjcroucher | 25 January 2021, 20:34:28 UTC | Add to path for package search | 25 January 2021, 20:34:28 UTC |
| 1be1be9 | nickjcroucher | 25 January 2021, 20:22:24 UTC | Remove version from __init__ | 25 January 2021, 20:22:24 UTC |
| f355825 | nickjcroucher | 25 January 2021, 20:22:24 UTC | Remove version from __init__ | 25 January 2021, 20:22:24 UTC |
| 0296e3c | nickjcroucher | 25 January 2021, 19:40:56 UTC | Clarify menu options | 25 January 2021, 19:40:56 UTC |
| 688425d | nickjcroucher | 25 January 2021, 19:40:56 UTC | Clarify menu options | 25 January 2021, 19:40:56 UTC |
| 061f8fe | nickjcroucher | 19 January 2021, 22:38:56 UTC | Make raxmlng test more stable | 19 January 2021, 22:38:56 UTC |
| 35ee8fe | nickjcroucher | 19 January 2021, 22:38:56 UTC | Make raxmlng test more stable | 19 January 2021, 22:38:56 UTC |
| 3f28d80 | nickjcroucher | 19 January 2021, 22:29:40 UTC | Remove downloaded files | 19 January 2021, 22:29:40 UTC |
| 8964a69 | nickjcroucher | 19 January 2021, 22:29:40 UTC | Remove downloaded files | 19 January 2021, 22:29:40 UTC |
| 35b99bb | nickjcroucher | 19 January 2021, 22:26:59 UTC | apt-get only run with Linux | 19 January 2021, 22:26:59 UTC |
| 5561236 | nickjcroucher | 19 January 2021, 22:26:59 UTC | apt-get only run with Linux | 19 January 2021, 22:26:59 UTC |
| 51f3c46 | nickjcroucher | 19 January 2021, 21:51:56 UTC | Change menu options | 19 January 2021, 21:51:56 UTC |
| f1084cd | nickjcroucher | 19 January 2021, 21:51:56 UTC | Change menu options | 19 January 2021, 21:51:56 UTC |
| 737f954 | nickjcroucher | 19 January 2021, 21:10:01 UTC | Improve memory management error message | 19 January 2021, 21:10:01 UTC |
| 77883a8 | nickjcroucher | 19 January 2021, 21:10:01 UTC | Improve memory management error message | 19 January 2021, 21:10:01 UTC |
| 2d68315 | nickjcroucher | 19 January 2021, 19:49:15 UTC | Add missing dependencies to installation files | 19 January 2021, 19:49:15 UTC |
| d8be9e1 | nickjcroucher | 19 January 2021, 19:49:15 UTC | Add missing dependencies to installation files | 19 January 2021, 19:49:15 UTC |
| 685b303 | nickjcroucher | 19 January 2021, 19:45:29 UTC | Specify versions in environment.yml | 19 January 2021, 19:45:29 UTC |
| aa75c84 | nickjcroucher | 19 January 2021, 19:45:29 UTC | Specify versions in environment.yml | 19 January 2021, 19:45:29 UTC |
| 2377005 | nickjcroucher | 19 January 2021, 19:40:12 UTC | Remove Makefile.in | 19 January 2021, 19:40:12 UTC |
| f7253a9 | nickjcroucher | 19 January 2021, 19:40:12 UTC | Remove Makefile.in | 19 January 2021, 19:40:12 UTC |
| cf21522 | nickjcroucher | 19 January 2021, 19:28:44 UTC | Use shutil to move file | 19 January 2021, 19:28:44 UTC |
| fe79e08 | nickjcroucher | 19 January 2021, 19:28:44 UTC | Use shutil to move file | 19 January 2021, 19:28:44 UTC |
| c61069d | nickjcroucher | 07 January 2021, 16:56:22 UTC | Update help message | 07 January 2021, 16:56:22 UTC |
| f34b0dd | nickjcroucher | 07 January 2021, 16:56:22 UTC | Update help message | 07 January 2021, 16:56:22 UTC |
| 4d2d147 | nickjcroucher | 06 January 2021, 09:26:16 UTC | Introduce bootstrapping tests | 06 January 2021, 09:26:16 UTC |
| e7b7fb4 | nickjcroucher | 06 January 2021, 09:26:16 UTC | Introduce bootstrapping tests | 06 January 2021, 09:26:16 UTC |
| 0dbe412 | nickjcroucher | 06 January 2021, 08:24:06 UTC | Change names of intermediate files | 06 January 2021, 08:24:06 UTC |
| a1e7de3 | nickjcroucher | 06 January 2021, 08:24:06 UTC | Change names of intermediate files | 06 January 2021, 08:24:06 UTC |
| 11591a4 | nickjcroucher | 05 January 2021, 21:46:13 UTC | Simplify code coverage upload | 05 January 2021, 21:46:13 UTC |
| 83f4316 | nickjcroucher | 05 January 2021, 21:46:13 UTC | Simplify code coverage upload | 05 January 2021, 21:46:13 UTC |
| 3e478b2 | nickjcroucher | 05 January 2021, 21:25:19 UTC | Update code for selecting RAxML algorithm based on CPU | 05 January 2021, 21:25:48 UTC |
| abe2483 | nickjcroucher | 05 January 2021, 21:25:19 UTC | Update code for selecting RAxML algorithm based on CPU | 05 January 2021, 21:25:48 UTC |
| 12b9189 | nickjcroucher | 05 January 2021, 19:59:39 UTC | Multi-thread tests | 05 January 2021, 19:59:39 UTC |
| a976ca0 | nickjcroucher | 05 January 2021, 19:59:39 UTC | Multi-thread tests | 05 January 2021, 19:59:39 UTC |
| 0427cd4 | nickjcroucher | 05 January 2021, 16:43:22 UTC | Fix clean up function | 05 January 2021, 16:43:22 UTC |
| 7c3048e | nickjcroucher | 05 January 2021, 16:43:22 UTC | Fix clean up function | 05 January 2021, 16:43:22 UTC |
| 15c584f | nickjcroucher | 05 January 2021, 16:33:47 UTC | Fix clean up function | 05 January 2021, 16:33:47 UTC |
| eb3a880 | nickjcroucher | 05 January 2021, 16:33:47 UTC | Fix clean up function | 05 January 2021, 16:33:47 UTC |
| 361c175 | nickjcroucher | 05 January 2021, 16:03:48 UTC | Refine clean up function | 05 January 2021, 16:03:48 UTC |
| d72efa3 | nickjcroucher | 05 January 2021, 16:03:48 UTC | Refine clean up function | 05 January 2021, 16:03:48 UTC |
| 65dee2f | nickjcroucher | 05 January 2021, 15:36:49 UTC | Define working directory | 05 January 2021, 15:36:49 UTC |
| 7895b7e | nickjcroucher | 05 January 2021, 15:36:49 UTC | Define working directory | 05 January 2021, 15:36:49 UTC |
| 2e21266 | nickjcroucher | 05 January 2021, 14:56:07 UTC | Exit when unable to find suitable RAxML software | 05 January 2021, 14:56:07 UTC |
| 9ed422d | nickjcroucher | 05 January 2021, 14:56:07 UTC | Exit when unable to find suitable RAxML software | 05 January 2021, 14:56:07 UTC |
