swh:1:snp:5789d5563ae0ff1fac9d4620526a6e02863df326
Tip revision: 0e145bb0c8b24709f9d832258c40635f050e7f92 authored by Thomas Mooney on 29 November 2012, 20:02:13 UTC
Just make it optional so we don't try to save NULL to the db.
Just make it optional so we don't try to save NULL to the db.
Tip revision: 0e145bb
.gitmodules
[submodule "somatic-sniper"]
path = somatic-sniper
url = ssh://git/srv/git/somatic-sniper.git
[submodule "joinx"]
path = joinx
url = ssh://git/srv/git/joinx.git
[submodule "vendor/Net-HTTPServer"]
path = vendor/Net-HTTPServer
url = ssh://git/srv/git/vendor/Net-HTTPServer.git
[submodule "vendor/File-Grep"]
path = vendor/File-Grep
url = ssh://git/srv/git/vendor/File-Grep.git
[submodule "tigra"]
path = tigra
url = ssh://git//srv/git/tigra.git
[submodule "genome-music-testdata"]
path = genome-music-testdata
url = ssh://git//srv/git/genome-music-testdata.git
[submodule "varscan"]
path = varscan
url = ssh://git//srv/git/varscan.git
[submodule "tigra-sv"]
path = tigra-sv
url = ssh://git/srv/git/tigra-sv.git
[submodule "breakdancer"]
path = breakdancer
url = git://github.com/genome/breakdancer.git
[submodule "genome-db-cosmic"]
path = genome-db-cosmic
url = ssh://git//srv/git/genome-db-cosmic.git
[submodule "genome-db-omim"]
path = genome-db-omim
url = ssh://git//srv/git/genome-db-omim.git
[submodule "genome-db-pfam"]
path = genome-db-pfam
url = ssh://git//srv/git/genome-db-pfam.git
[submodule "bam-readcount"]
path = bam-readcount
url = ssh://git//srv/git/bam-readcount.git
[submodule "ur"]
path = ur
url = https://github.com/genome/UR.git
[submodule "workflow"]
path = workflow
url = ssh://git/srv/git/workflow.git
[submodule "jenkins"]
path = jenkins
url = https://github.com/genome/wugc-hudson.git
[submodule "getopt-complete"]
path = getopt-complete
url = https://github.com/genome/Getopt--Complete-for-Perl.git
[submodule "bassovac"]
path = bassovac
url = ssh://git/srv/git/bassovac.git
[submodule "graphite"]
path = graphite
url = https://github.com/genome/graphite.git
[submodule "fqgrep"]
path = fqgrep
url = https://github.com/genome/fqgrep.git
[submodule "sff2fastq"]
path = sff2fastq
url = https://github.com/genome/sff2fastq.git
[submodule "cron"]
path = cron
url = ssh://git/srv/git/genome_cron.git
[submodule "pairoscope"]
path = pairoscope
url = ssh://git//srv/git/pairoscope.git
[submodule "alignment_summary"]
path = alignment_summary
url = ssh://git//srv/git/alignment_summary.git
[submodule "vendor/tophat"]
path = vendor/tophat
url = git@github.com:genome-vendor/tophat.git
[submodule "vendor/libbio-samtools-perl"]
path = vendor/libbio-samtools-perl
url = ssh://git/srv/git/vendor/libbio-samtools-perl
[submodule "vendor/samtools"]
path = vendor/samtools
url = ssh://git/srv/git/vendor/samtools
[submodule "vendor/bwa"]
path = vendor/bwa
url = git://github.com/genome-vendor/bwa.git
[submodule "vendor/apollo"]
path = vendor/apollo
url = git@github.com:genome-vendor/apollo.git
[submodule "vendor/mutalin"]
path = vendor/mutalin
url = git@github.com:genome-vendor/mutalin.git
[submodule "vendor/cufflinks"]
path = vendor/cufflinks
url = git@github.com:genome-vendor/cufflinks.git
[submodule "vendor/velvet"]
path = vendor/velvet
url = git@github.com:genome-vendor/velvet.git
[submodule "vendor/samtools-hybrid"]
path = vendor/samtools-hybrid
url = git@github.com:genome-vendor/samtools-0.1.7a-hybrid.git
[submodule "vendor/bsmap"]
path = vendor/bsmap
url = git@github.com:genome-vendor/bsmap.git
[submodule "vendor/allpathslg"]
path = vendor/allpathslg
url = git@github.com:genome-vendor/allpathslg.git
[submodule "vendor/ensembl"]
path = vendor/ensembl
url = git@github.com:genome-vendor/ensembl.git
[submodule "vendor/CummeRbund"]
path = vendor/CummeRbund
url = git@github.com:genome-vendor/CummeRbund.git
[submodule "tgi-etc"]
path = tgi-etc
url = ssh://git/srv/git/genome-tgi-etc.git
[submodule "vendor/pindel"]
path = vendor/pindel
url = git@github.com:genome-vendor/pindel.git
[submodule "vendor/dendrix"]
path = vendor/dendrix
url = git@github.com:genome-vendor/Dendrix.git
[submodule "vendor/hotnet"]
path = vendor/hotnet
url = git@github.com:genome-vendor/HotNet.git
[submodule "vendor/File-lockf"]
path = vendor/File-lockf
url = http://github.com/genome-vendor/File-Lockf.git
[submodule "vendor/statgen"]
path = vendor/statgen
url = git@github.com:genome-vendor/statgen.git
[submodule "vendor/tophat-fusion"]
path = vendor/tophat-fusion
url = git@github.com:genome-vendor/tophat-fusion.git
[submodule "vendor/MGLtools"]
path = vendor/MGLtools
url = git@github.com:genome-vendor/MGLtools.git
[submodule "vendor/savant"]
path = vendor/savant
url = git://github.com/genome-vendor/savant.git
[submodule "vendor/freebayes"]
path = vendor/freebayes
url = git@github.com:genome-vendor/freebayes.git
[submodule "vendor/FLASH"]
path = vendor/FLASH
url = git@github.com:genome-vendor/FLASH.git
[submodule "vendor/chimerascan"]
path = vendor/chimerascan
url = git@github.com:genome-vendor/chimerascan.git
[submodule "vendor/r-cran-gplots"]
path = vendor/r-cran-gplots
url = git@github.com:genome-vendor/r-cran-gplots.git
[submodule "vendor/r-cran-bitops"]
path = vendor/r-cran-bitops
url = git@github.com:genome-vendor/r-cran-bitops.git
[submodule "vendor/r-cran-catools"]
path = vendor/r-cran-catools
url = git@github.com:genome-vendor/r-cran-catools.git
[submodule "vendor/r-cran-h5r"]
path = vendor/r-cran-h5r
url = git@github.com:genome-vendor/r-cran-h5r.git
[submodule "vendor/r-cran-pbh5"]
path = vendor/r-cran-pbh5
url = git@github.com:genome-vendor/r-cran-pbh5
[submodule "vendor/r-bioc-lumi"]
path = vendor/r-bioc-lumi
url = git@github.com:genome-vendor/r-bioc-lumi.git
[submodule "vendor/r-bioc-biobase"]
path = vendor/r-bioc-biobase
url = git@github.com:genome-vendor/r-bioc-biobase.git
[submodule "genome-snapshot-testdata"]
path = genome-snapshot-testdata
url = ssh://git//srv/git/genome-snapshot-testdata.git
[submodule "vendor/libstatistics-robust-scale-perl"]
path = vendor/libstatistics-robust-scale-perl
url = git@github.com:genome-vendor/libstatistics-robust-scale-perl.git
[submodule "vendor/r-cran-skat"]
path = vendor/r-cran-skat
url = git@github.com:genome-vendor/r-cran-skat.git
[submodule "vendor/bowtie"]
path = vendor/bowtie
url = git@github.com:genome-vendor/bowtie.git
[submodule "vendor/r-cran-ggplot2"]
path = vendor/r-cran-ggplot2
url = git@github.com:genome-vendor/r-cran-ggplot2.git
[submodule "vendor/MetaVelvet"]
path = vendor/MetaVelvet
url = git@github.com:genome-vendor/MetaVelvet.git
[submodule "vendor/Statistics-TTest"]
path = vendor/Statistics-TTest
url = git@github.com:genome-vendor/Statistics-TTest.git
[submodule "vendor/bedtools"]
path = vendor/bedtools
url = git@github.com:genome-vendor/bedtools.git
[submodule "genome-snapshot-deps"]
path = genome-snapshot-deps
url = ssh://git/srv/git/genome-snapshot-deps.git
[submodule "vendor/polymutt"]
path = vendor/polymutt
url = git@github.com:genome-vendor/polymutt.git
[submodule "vendor/trinity"]
path = vendor/trinity
url = git@github.com:genome-vendor/trinity.git
[submodule "vendor/r-cran-rcurl"]
path = vendor/r-cran-rcurl
url = git@github.com:genome-vendor/r-cran-rcurl.git
[submodule "vendor/r-cran-chemminer"]
path = vendor/r-cran-chemminer
url = git@github.com:genome-vendor/r-cran-chemminer.git
[submodule "vendor/far"]
path = vendor/far
url = git@github.com:genome-vendor/far.git
[submodule "vendor/r-cran-fastcluster"]
path = vendor/r-cran-fastcluster
url = git@github.com:genome-vendor/r-cran-fastcluster.git
[submodule "vendor/r-cran-plyr"]
path = vendor/r-cran-plyr
url = git@github.com:genome-vendor/r-cran-plyr.git
[submodule "vendor/r-cran-reshape"]
path = vendor/r-cran-reshape
url = git@github.com:genome-vendor/r-cran-reshape.git
[submodule "vendor/r-cran-reshape2"]
path = vendor/r-cran-reshape2
url = git@github.com:genome-vendor/r-cran-reshape2.git
[submodule "vendor/r-cran-rsqlite"]
path = vendor/r-cran-rsqlite
url = git@github.com:genome-vendor/r-cran-rsqlite.git
[submodule "vendor/r-cran-stringr"]
path = vendor/r-cran-stringr
url = git@github.com:genome-vendor/r-cran-stringr.git
[submodule "vendor/VEP_plugins"]
path = vendor/VEP_plugins
url = https://github.com/genome-vendor/VEP_plugins.git