swh:1:snp:5789d5563ae0ff1fac9d4620526a6e02863df326
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Tip revision: 7306613a6095c4b2eeb80c8c569fce192cae0d79 authored by Thomas B. Mooney on 07 April 2015, 13:28:00 UTC
Merge pull request #638 from tmooney/spaces_in_picard_arguments
Tip revision: 7306613
basic.bats
#!/usr/bin/env bats

load test_helper
export BATS_TEST_DIRNAME

function setup {
    init_workspace
    export GE_NO_REDIRECT=1
    cd $WORKSPACE/genome
}

function teardown {
    rm_workspace
}

@test "basic test: genome-env" {
    $BATS_TEST_DIRNAME/../bin/genome-env "$BATS_TEST_DIRNAME/testexec/default.sh"
}

@test "basic test: genome-env -D" {
    $BATS_TEST_DIRNAME/../bin/genome-env -D "$BATS_TEST_DIRNAME/testexec/D.sh"
}

@test "basic test: genome-env -U" {
    export PERL5LIB="$WORKSPACE/ur/lib:$PERL5LIB"
    $BATS_TEST_DIRNAME/../bin/genome-env -D -U "$BATS_TEST_DIRNAME/testexec/U.sh"
}

@test "basic test: genome-env -u" {
    $BATS_TEST_DIRNAME/../bin/genome-env -D -u $WORKSPACE/ur "$BATS_TEST_DIRNAME/testexec/U.sh"
}

@test "basic test: genome-env -W" {
    export PERL5LIB="$WORKSPACE/workflow/lib:$PERL5LIB"
    $BATS_TEST_DIRNAME/../bin/genome-env -D -W "$BATS_TEST_DIRNAME/testexec/W.sh"
}

@test "basic test: genome-env -w" {
    $BATS_TEST_DIRNAME/../bin/genome-env -D -w $WORKSPACE/workflow "$BATS_TEST_DIRNAME/testexec/W.sh"
}

@test "basic test: genome-env -M" {
    $BATS_TEST_DIRNAME/../bin/genome-env -D -M "$BATS_TEST_DIRNAME/testexec/M.sh"
}

@test "basic test: genome-env -m" {
    $BATS_TEST_DIRNAME/../bin/genome-env -m $WORKSPACE/genome-sqitch "$BATS_TEST_DIRNAME/testexec/migration.sh"
}
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