# OncoPhase
OncoPhase: Quantification of somatic mutation cellular prevalence using phase information.

Developed in the Ovarian Cancer Cell Laboratory, University of Oxford, United Kingdom.

This package offers a direct method to quantify the cellular
prevalence of a somatic mutation  using phase information. The
method utilizes three sources of information: the phasing information, the copy
number variation, and the allele counts. The method is demonstrated to bring
more capabilities in Cancer Genomics.


To Download and install the package.

A- Using devtools :

1- If you dont already have devtools installed, proceed to its installation : 

install.packages("devtools")

library(devtools)


2- Download, install and launch OncoPhase :

install_github("chedonat/OncoPhase")

library(OncoPhase)

help(OncoPhase)