swh:1:snp:68efb3baf28256c952b30ae9ecf5cb4fac86eafb
Tip revision: 95c6650ba30d4209b7117a72d87f1ad75f375ac5 authored by John Chilton on 05 August 2024, 13:42:17 UTC
Merge pull request #18644 from jmchilton/bugfix_functional_test_tools
Merge pull request #18644 from jmchilton/bugfix_functional_test_tools
Tip revision: 95c6650
tox.ini
[tox]
# envlist is the list of environments that are tested when `tox` is run without any option
# hyphens in an environment name are used to delimit factors
envlist =
first_startup
lint
lint_docstring_include_list
mypy
reports_startup
unit
unit-coverage
test_galaxy_packages
validate_test_tools
skipsdist = True
[testenv]
commands =
first_startup: bash .ci/first_startup.sh
lint: ruff check .
# Once we are happy to replace flake8 with ruff, we can replace the next line with `black --check --diff`
# (since ruff delegates to black for checking/fixing many rules).
lint: bash .ci/flake8_wrapper.sh
lint_docstring: bash .ci/flake8_wrapper_docstrings.sh --exclude
lint_docstring_include_list: bash .ci/flake8_wrapper_docstrings.sh --include
reports_startup: bash .ci/first_startup.sh reports
mulled,unit: bash run_tests.sh -u
# start with test here but obviously someday all of it...
mypy: mypy test lib
test_galaxy_packages,test_galaxy_packages_for_pulsar: make generate-cwl-conformance-tests
test_galaxy_packages: bash packages/test.sh
test_galaxy_packages_for_pulsar: bash packages/test.sh --for-pulsar
allowlist_externals =
bash
make
passenv =
CI
CONDA_EXE
GALAXY_CONDA_PYTHON_VERSION
GALAXY_CONFIG_OVERRIDE_DATABASE_CONNECTION
APP_WEBSERVER
TERM
TEST_PYTHON
TZ
setenv =
coverage: GALAXY_TEST_COVERAGE=1
first_startup: GALAXY_CONFIG_DATABASE_AUTO_MIGRATE=true
mulled: marker=external_dependency_management
mulled,unit: GALAXY_VIRTUAL_ENV={envdir}
unit: GALAXY_ENABLE_BETA_COMPRESSED_GENBANK_SNIFFING=1
unit: marker=not external_dependency_management
deps =
coverage: coverage
lint,lint_docstring,lint_docstring_include_list: -rlib/galaxy/dependencies/pinned-lint-requirements.txt
mypy: -rlib/galaxy/dependencies/pinned-typecheck-requirements.txt
mypy: -rlib/galaxy/dependencies/pinned-requirements.txt
test_galaxy_packages,test_galaxy_packages_for_pulsar: pyyaml
unit: mock-ssh-server
[testenv:mako_count]
commands = bash .ci/check_mako.sh
[testenv:test_galaxy_release]
commands = bash test/release.sh
[testenv:validate_test_tools]
commands = bash .ci/validate_test_tools.sh
[testenv:web_controller_line_count]
commands = bash .ci/check_controller.sh
[testenv:check_indexes]
commands =
bash scripts/common_startup.sh --skip-node --skip-client-build
bash manage_db.sh init
bash check_model.sh