swh:1:snp:72a4c465b82ec18a5d1f703821d91720268b476f
Tip revision: 9cab8cfa4033d3f47a36c7bb816b2c9fae5cfdc6 authored by Philipp A on 07 June 2023, 13:46:06 UTC
Convert issue report templates to forms (#2503)
Convert issue report templates to forms (#2503)
Tip revision: 9cab8cf
.azure-pipelines.yml
trigger:
- master
variables:
python.version: '3.9'
PIP_CACHE_DIR: $(Pipeline.Workspace)/.pip
ANNDATA_DEV: no
RUN_COVERAGE: no
TEST_EXTRA: 'test-full'
PRERELEASE_DEPENDENCIES: no
jobs:
- job: PyTest
pool:
vmImage: 'ubuntu-22.04'
strategy:
matrix:
Python38:
python.version: '3.8'
Python39: {}
minimal_tests:
TEST_EXTRA: 'test-min'
anndata_dev:
python.version: '3.9'
ANNDATA_DEV: yes
RUN_COVERAGE: yes
PRERELEASE_DEPENDENCIES: yes
steps:
- task: UsePythonVersion@0
inputs:
versionSpec: '$(python.version)'
displayName: 'Use Python $(python.version)'
- task: Cache@2
inputs:
key: '"python $(python.version)" | "$(Agent.OS)" | pyproject.toml'
restoreKeys: |
python | "$(Agent.OS)"
python
path: $(PIP_CACHE_DIR)
displayName: Cache pip packages
- script: |
export MPLBACKEND="agg"
echo $MPLBACKEND
displayName: 'Set env'
- script: |
python -m pip install --upgrade pip
pip install pytest-cov wheel
pip install .[dev,$(TEST_EXTRA)]
displayName: 'Install dependencies'
condition: eq(variables['PRERELEASE_DEPENDENCIES'], 'no')
- script: |
python -m pip install --pre --upgrade pip
pip install --pre pytest-cov wheel
pip install --pre .[dev,$(TEST_EXTRA)]
displayName: 'Install dependencies release candidates'
condition: eq(variables['PRERELEASE_DEPENDENCIES'], 'yes')
- script: |
pip install -v "anndata[dev,test] @ git+https://github.com/scverse/anndata"
displayName: 'Install development anndata'
condition: eq(variables['ANNDATA_DEV'], 'yes')
- script: |
pip list
displayName: 'Display installed versions'
- script: |
pytest -v --color=yes --ignore=scanpy/tests/_images --nunit-xml="nunit/test-results.xml"
displayName: 'PyTest'
condition: eq(variables['RUN_COVERAGE'], 'no')
- script: |
pytest -v --color=yes --ignore=scanpy/tests/_images --nunit-xml="nunit/test-results.xml" --cov=scanpy --cov-report=xml
displayName: 'PyTest (coverage)'
condition: eq(variables['RUN_COVERAGE'], 'yes')
- task: PublishCodeCoverageResults@1
inputs:
codeCoverageTool: Cobertura
summaryFileLocation: '$(System.DefaultWorkingDirectory)/**/coverage.xml'
reportDirectory: '$(System.DefaultWorkingDirectory)/**/htmlcov'
condition: eq(variables['RUN_COVERAGE'], 'yes')
- task: PublishTestResults@2
condition: succeededOrFailed()
inputs:
testResultsFiles: 'nunit/test-results.xml'
testResultsFormat: NUnit
testRunTitle: 'Publish test results for Python $(python.version)'
- script: bash <(curl -s https://codecov.io/bash)
displayName: 'Upload to codecov.io'
condition: eq(variables['RUN_COVERAGE'], 'yes')
- job: CheckBuild
pool:
vmImage: 'ubuntu-22.04'
steps:
- task: UsePythonVersion@0
inputs:
versionSpec: '3.9'
displayName: 'Use Python 3.9'
- script: |
python -m pip install --upgrade pip
pip install build twine
displayName: 'Install build tools and requirements'
- script: pip list
displayName: 'Display installed versions'
- script: |
python -m build --sdist --wheel .
twine check dist/*
displayName: 'Build & Twine check'